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Author: Andreas Tille <tille@debian.org>
Last-Update: Tue, 12 Jul 2016 16:15:32 +0200
Description: Fix some spelling issues
Index: ncbi-vdb/libs/krypto/encfilev2.c
===================================================================
--- ncbi-vdb.orig/libs/krypto/encfilev2.c
+++ ncbi-vdb/libs/krypto/encfilev2.c
@@ -1002,7 +1002,7 @@ rc_t KEncFileBlockRead (KEncFile * self,
PLOGERR (klogErr, (klogErr, vrc, "read missing block at "
"block number '$(I)' encrypted position "
- "$(E) decrypted postion $(D)",
+ "$(E) decrypted position $(D)",
"I=%lu,E=%lu,D=%lu", block_id, epos,
dpos));
if ( rc == 0 )
Index: ncbi-vdb/interfaces/sra/fastq.h
===================================================================
--- ncbi-vdb.orig/interfaces/sra/fastq.h
+++ ncbi-vdb/interfaces/sra/fastq.h
@@ -80,7 +80,7 @@ SRA_RD_EXTERN rc_t CC FastqReaderFirstSp
/* SeekSpot
* set current spot
- * if error occured current spot position becomes 0
+ * if error occurred current spot position becomes 0
*/
SRA_RD_EXTERN rc_t CC FastqReaderSeekSpot(const FastqReader* self, spotid_t spot);
Index: ncbi-vdb/interfaces/sra/illumina.h
===================================================================
--- ncbi-vdb.orig/interfaces/sra/illumina.h
+++ ncbi-vdb/interfaces/sra/illumina.h
@@ -75,7 +75,7 @@ SRA_RD_EXTERN rc_t CC IlluminaReaderFirs
/* SeekSpot
* set current spot
- * if error occured current spot position becomes 0
+ * if error occurred current spot position becomes 0
*/
SRA_RD_EXTERN rc_t CC IlluminaReaderSeekSpot(const IlluminaReader* self, spotid_t spot);
Index: ncbi-vdb/interfaces/sra/sff.h
===================================================================
--- ncbi-vdb.orig/interfaces/sra/sff.h
+++ ncbi-vdb/interfaces/sra/sff.h
@@ -68,7 +68,7 @@ SRA_RD_EXTERN rc_t CC SFFReaderFirstSpot
/* SeekSpot
* set current spot
- * if error occured current spot position becomes 0
+ * if error occurred current spot position becomes 0
*/
SRA_RD_EXTERN rc_t CC SFFReaderSeekSpot(const SFFReader* self, spotid_t spot);
Index: ncbi-vdb/interfaces/align/align-access.h
===================================================================
--- ncbi-vdb.orig/interfaces/align/align-access.h
+++ ncbi-vdb/interfaces/align/align-access.h
@@ -52,7 +52,7 @@ struct VPath;
typedef uint8_t AlignmentStrandDirection;
enum
{
- asd_Unknown, /* e.g. an error occured */
+ asd_Unknown, /* e.g. an error occurred */
asd_Forward = 'F',
asd_Reverse = 'R'
};
Index: ncbi-vdb/interfaces/sra/abi.h
===================================================================
--- ncbi-vdb.orig/interfaces/sra/abi.h
+++ ncbi-vdb/interfaces/sra/abi.h
@@ -72,7 +72,7 @@ SRA_RD_EXTERN rc_t CC AbsolidReaderFirst
/* SeekSpot
* set current spot
- * if error occured current spot position becomes 0
+ * if error occurred current spot position becomes 0
*/
SRA_RD_EXTERN rc_t CC AbsolidReaderSeekSpot(const AbsolidReader* self, spotid_t spot);
Index: ncbi-vdb/libs/blast/blast-mgr.c
===================================================================
--- ncbi-vdb.orig/libs/blast/blast-mgr.c
+++ ncbi-vdb/libs/blast/blast-mgr.c
@@ -470,7 +470,7 @@ LIB_EXPORT uint32_t VdbBlastMgrKConfigPr
}
if (rc != 0) {
- LOGERR(klogInt, rc, "An error occured when printing Configiration");
+ LOGERR(klogInt, rc, "An error occurred when printing Configiration");
return eVdbBlastErr;
}
@@ -483,7 +483,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKDbgSe
rc_t rc = KDbgSetString(string);
if (rc != 0) {
- LOGERR(klogInt, rc, "An error occured when setting KDbgString");
+ LOGERR(klogInt, rc, "An error occurred when setting KDbgString");
return eVdbBlastErr;
}
@@ -496,7 +496,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogHa
rc_t rc = KLogHandlerSet(writer, data);
if (rc != 0) {
- LOGERR(klogInt, rc, "An error occured when setting KLogHandler");
+ LOGERR(klogInt, rc, "An error occurred when setting KLogHandler");
return eVdbBlastErr;
}
@@ -510,7 +510,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogHa
if (rc != 0) {
LOGERR(
- klogInt, rc, "An error occured when setting KLogHandler to StdErr");
+ klogInt, rc, "An error occurred when setting KLogHandler to StdErr");
return eVdbBlastErr;
}
@@ -524,7 +524,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogHa
if (rc != 0) {
LOGERR(
- klogInt, rc, "An error occured when setting KLogHandler to StdOut");
+ klogInt, rc, "An error occurred when setting KLogHandler to StdOut");
return eVdbBlastErr;
}
@@ -537,7 +537,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogLi
rc_t rc = KLogLibHandlerSet(writer, data);
if (rc != 0) {
- LOGERR(klogInt, rc, "An error occured when setting KLogLibHandler");
+ LOGERR(klogInt, rc, "An error occurred when setting KLogLibHandler");
return eVdbBlastErr;
}
@@ -551,7 +551,7 @@ uint32_t CC VdbBlastMgrKLogLibHandlerSet
if (rc != 0) {
LOGERR(klogInt, rc,
- "An error occured when setting KLogLibHandler to StdErr");
+ "An error occurred when setting KLogLibHandler to StdErr");
return eVdbBlastErr;
}
@@ -565,7 +565,7 @@ uint32_t CC VdbBlastMgrKLogLibHandlerSet
if (rc != 0) {
LOGERR(klogInt, rc,
- "An error occured when setting KLogLibHandler to StdOut");
+ "An error occurred when setting KLogLibHandler to StdOut");
return eVdbBlastErr;
}
@@ -578,7 +578,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKOutHa
rc_t rc = KOutHandlerSet(writer, data);
if (rc != 0) {
- LOGERR(klogInt, rc, "An error occured when setting KOutHandler");
+ LOGERR(klogInt, rc, "An error occurred when setting KOutHandler");
return eVdbBlastErr;
}
@@ -592,7 +592,7 @@ uint32_t CC VdbBlastMgrKOutHandlerSetStd
if (rc != 0) {
LOGERR(
- klogInt, rc, "An error occured when setting KOutHandler to StdErr");
+ klogInt, rc, "An error occurred when setting KOutHandler to StdErr");
return eVdbBlastErr;
}
@@ -606,7 +606,7 @@ uint32_t CC VdbBlastMgrKOutHandlerSetStd
if (rc != 0) {
LOGERR(
- klogInt, rc, "An error occured when setting KOutHandler to StdOut");
+ klogInt, rc, "An error occurred when setting KOutHandler to StdOut");
return eVdbBlastErr;
}
@@ -620,7 +620,7 @@ uint32_t CC VdbBlastMgrKStsHandlerSetStd
if (rc != 0) {
LOGERR(
- klogInt, rc, "An error occured when setting KStsHandler to StdErr");
+ klogInt, rc, "An error occurred when setting KStsHandler to StdErr");
return eVdbBlastErr;
}
@@ -634,7 +634,7 @@ uint32_t CC VdbBlastMgrKStsHandlerSetStd
if (rc != 0) {
LOGERR(
- klogInt, rc, "An error occured when setting KStsHandler to StdOut");
+ klogInt, rc, "An error occurred when setting KStsHandler to StdOut");
return eVdbBlastErr;
}
@@ -647,7 +647,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogLe
rc_t rc = KLogLevelSet(lvl);
if (rc != 0) {
- LOGERR(klogInt, rc, "An error occured when setting KLogLevel");
+ LOGERR(klogInt, rc, "An error occurred when setting KLogLevel");
return eVdbBlastErr;
}
Index: ncbi-vdb/libs/kns/linux/sysendpoint.c
===================================================================
--- ncbi-vdb.orig/libs/kns/linux/sysendpoint.c
+++ ncbi-vdb/libs/kns/linux/sysendpoint.c
@@ -141,10 +141,10 @@ rc_t CC KNSManagerInitDNSEndpoint ( stru
rc = RC ( rcNS, rcNoTarg, rcValidating, rcConnection, rcEmpty );
break;
#endif
- case NO_RECOVERY: /* A nonrecoverable name server error occured */
+ case NO_RECOVERY: /* A nonrecoverable name server error occurred */
rc = RC ( rcNS, rcNoTarg, rcValidating, rcConnection, rcDestroyed );
break;
- case TRY_AGAIN: /* A temporary error occured on an authoritative name server. Try again later */
+ case TRY_AGAIN: /* A temporary error occurred on an authoritative name server. Try again later */
rc = RC ( rcNS, rcNoTarg, rcValidating, rcConnection, rcBusy );
break;
case ERANGE:
Index: ncbi-vdb/libs/sra/reader-cmn.h
===================================================================
--- ncbi-vdb.orig/libs/sra/reader-cmn.h
+++ ncbi-vdb/libs/sra/reader-cmn.h
@@ -100,7 +100,7 @@ rc_t SRAReaderFirstSpot(const SRAReader*
/* SeekSpot
* set current spot
- * if error occured current spot position becomes 0
+ * if error occurred current spot position becomes 0
*/
rc_t SRAReaderSeekSpot(const SRAReader* self, spotid_t spot);
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