.TH NCVIEW 1 local
.SH NAME
ncview \- graphically display netCDF files under X windows
.SH SYNOPSIS
.B ncview
[\-beep] [\-copying] [\-frames] [\-warranty] [\-private] [\-ncolors XX] [\-extrainfo] [\-mtitle "title"] [\-minmax fast | med | slow | all] datafiles ...
.PP
.SH DESCRIPTION
.I Ncview
displays 2-D slices of a netCDF data file, using the X Window System
graphical user interface (Release 4 or higher).
You can examine different floating point variables in the file, and animate
the floating point data along the ``record dimension'' (usually time) 
to see how it evolves.
You can also display 1-D (line plot) views of the data simply by
clicking the mouse on the point of interest.
.PP
When you first invoke 
.I ncview,
a command panel comes up which has a number of buttons
for manipulating the current view into the data file,
and presenting various information about the current view.
From the top, going down, the information
fields are: the 'title' of the data file;
the 'long_name' of the currently selected variable;
the frame number (i.e., place along the scan axis)
currently displayed; the minimum and maximum values of the
variable; and
the value of the data point under the cursor (only
active when the pointer is over the color contour image).
.PP
Next comes a row of buttons similar to a tape recorder,
used for changing the view into the netCDF file
along the scan dimension.
In Version 1.XX of 
.I ncview,
the scan dimension is constrained to be the ``record dimension''
(in netCDF parlance).
From the left, the buttons are: the quit button; a button
to take you directly to the first frame, marked "->1";
rewind, which loops the images going backwards; step backwards; pause;
step forwards; and fast forward, which loops the images
going forwards.
.PP
Below this is the row of option buttons, which from
the left are: the colormap button, labeled with the name
of the current colormap (see below); "Inv P", which inverts the physical
representation of the data (flips it upside-down);
"Inv C", which inverts the colors currently being
used so that the colors indicating minimum and maximum 
are switched; the magnification button, which 
sets how much image expansion the image undergoes; and
the transformation button, which determines what preprocessing
the data undergoes before display.
For this button, "Linear" means no preprocessing, "Low" means
that the data is raised to the fourth power before conversion
to a pixel, so that low values are emphasized; and "Hi" means that
the fourth root of the data is taken before conversion, so
that large values are emphasized.
Next comes "Set Dim"; pressing this pops up a window which
allows you to determine which variables are shown on the X
and Y axes.
Note that Version 1.XX of
.I ncview
will 
.I not
transpose your data!
This means that, for example, you cannot simultaneously 
display the X dimension along the Y axis while displaying 
the Y dimension along the X axis---that would be an attempt
to transpose the data.
You can display the X dimension along the Y axis if some
other variable which varies less rapidly in your particular
data file (for example, depth) is on the X axis.
Such a configuration is possible because it involves no
transposition of data.
In general you don't have to worry about this issue much,
because if you attempt to pick axes which would be transposing
the data, 
.I ncview
switches them (and tells you that it's doing so!) so you can
get the axes you want.
Note that there is never any ambiguity about which dimensions are being  
displayed on what axes; that information is always shown
in the main panel.
Next is "range", which pops up dialog boxes to set the data
min and maxes which will be contoured.
Pressing with the RIGHTMOST mouse button on the "range" button
resets the ranges to match the currently displayed slice;
this is a VERY useful option, so remember it and make use
of it frequently!
The last button shows the method currently employed for
expanding the data onto the screen; the default, "bi-lin", 
performes a bi-linear interpolation.
Also available is "repl", which simply replicates the pixels
and is somewhat faster.
.PP
The next row of buttons shows what 
variables can be displayed from the input files.
Note that when 
.I ncview
first comes up, if there is more than one variable
in the file, you must select a variable to display before 
you will see anything.
If there is only one variable in the file, the selection
defaults to that one.
.PP
Below the variable selection buttons are the dimension
information fields.
All the dimensions for the displayed variable which can
take on more than one value are shown here, one variable
to a line.
In each line, there are 6 fields of information; from 
left to right, they are: "Dim", the Dimension identifier, which is
`Scan' if the dimension is currently the scanned dimension
(i.e., the dimension accessed via the tape-recorder style
buttons), `X' if the dimension appears in the color contour display
along the x axis, or `Y' if it appears in the color display 
along the y axis.  This
field will be blank if it isn't Scan, X, or Y.
Next come "Name", the dimension's short name; "Min", the minimum
value of the dimension; "Current", the current value of the dimension
as displayed in the color contour panel; "Max", the maximum value
of the dimension; and "Units", the dimension's units.
Clicking on the "Current" field of a dimension allows you to
change the current value of that dimension.
Clicking with the left mouse button increases the current value
of that dimension; clicking with the right button decreases it.
.PP
.SH POPUP X-Y GRAPH
You can get a popup X-Y (line) graph of data at a
point simply by clicking on the point of interest.
You have several options at this point; with the bottons
at the bottom of the window you can change the axis
along which the data is graphed (if there are other
axes available), use log scaling for the X and/or Y
axis, and set the data range.  You can also dump
out the data from the X-Y plot into an text file,
for easy importation into other programs.
.PP
Up to five line plots can be on one graph.  The panel
on which the next line plot will appear is called
the "locked" panel.  If you don't want the next line
plot to appear on the locked panel, then unlock it
by pressing the "Locked" button.
At the moment, panels are automatically unlocked when you choose
a new variable.
.PP
.SH UDUNITS SUPPORT
.I ncview 
supports time axes that use the conventions 
in the udunits package.  Typical units names in this
scheme would be "days since 1990-01-01".  If 
.I ncview
encounters a time dimension that it understands in
this way, then it displays the calendar date (as
calculated by the udunits package, not ncview)
rathar than the actual axis value.  For instance,
it might display "3_Jun_1995" rather than "Day 2390".
To have this functionality, the udunits package
must be able to find the "udunits.dat" file.
You must set the environmental variable UDUNITS_PATH to
the location of this file for ncview to be able
to find it.
.PP
.SH MODIFIERS
Clicking on a button with the left mouse button 
invokes the standard action described above; clicking
with the right mouse button on the colormap select,
transformation, magnification, or dimension "Current" buttons 
DECREASES the selection
instead of increasing it (i.e., cycles in the reverse direction).
Holding down the control key "accelerates" actions; while
clicking with the left mouse button will increase
the rate at which the rewind, step backwards, 
step forwards, and fast forward keys will step 
through the data.
When holding down the control key while clicking on the
magnification button, the magnification DOUBLES or HALVES
instead of incrementing or decrementing by one.
.PP
.I Ncview
attempts to save the displayed images in main memory,
with each frame being saved as it is calculated for the
first time.
This speeds up looping replays of the same data.
If there is not enough memory to store all the required
frames at the selected magnification, 
.I ncview
will inform you and automatically stop trying to do 
so.
Changing the magnification will again force 
.I ncview
to try and allocate a image buffer.
.PP
Since the scaled, interpolated pixel maps are stored, the following
operations will flush the image buffer and require
recalculating the images if they are performed:
inverting the data; inverting the color map; changing
the magnification; changing the data transformation (linear,
lo, or hi); changing the dimension; changing the range;
changing the pixel replication scheme.
Changing colormaps does not require refilling the image
buffer.
.PP
You can invoke
.I ncview
with multiple netCDF filenames on the command line, and
it will try to present the data in a logical way; i.e.,
if there are identically named variables in the data files,
it will try to treat them as if they were all in one giant
data file.
If there are different variables in different files, it 
will let you choose to display any of the available variables.
This is generally a Good Thing, but if you have identically
named variables in different files with different attributes,
.I ncview
will not know which attribute you want to use and most
likely will crash.
.PP
.SH SETTING THE DATA RANGE
.PP
It is important to set the data range correctly; otherwise,
the color contour might come out all red, or all blue, or
otherwise not very interesting.
There are a number of ways to set or manipulate the range:
1) Click with the left mouse button on the "range" button.
This pops up a dialog window letting you specify the minimum
and maximum values directly.
2) Click with the right mouse button on the "range" button.
This scales the displayed data to the currently shown frame.
3) Click with the left mouse button on a data point in the
color-contour window; this will set the minimum scaling to
the value of the data which you clicked on.
4) Click with the right mouse button on a data point in the
color-contour window; this will set the maximum scaling to
the value of the data which you clicked on.
.PP
.SH OPTIONS
.I -beep:
rings the terminal's bell when stepping forward through
frames in movie mode and the loop is restarted.
.PP
.I -extrainfo:
Puts up extra information in the color-contour window.
This is useful for photographing the computer screen to
make slides or pictures of the data.
.PP
.I -frames:
This will make ncview dump out the frames it displays
in a series of PPM-format files.
You can then make them into an mpeg movie if you so desire
(using tools other than ncview).
.PP
.I -mtitle:
Puts the following argument (enclosed in quotes) up
as the title of the color-contour window.
.PP
.I -ncolors:
Sets the number of colors which will be displayed. 
Defaults to 200.
Must currently be less than 256.
.PP
.I -private:
Forces use of a private colormap.  
This will cut down on the number of colormap entries
used, but will turn the rest of the screen annoying
colors.
.PP
.I -minmax:
determines how the calculation of minimum and maximum values
is done.  If
.I fast,
then only the first, middle, and last time entries of
each variable are examined.
If
.I med,
then every fifth time entry is scanned for extrema.
If
.I slow,
then every tenth entry is used.
If
.I all,
then every time entry is examined for extrema.
Default is "fast".
.PP
.I -copying:
prints out the terms under which 
.I ncview
may be copied, distributed, and modified.
.I Ncview
is covered under the provisions of the Gnu General 
Public Liicense Version 1.
.PP
.I -warranty:
.I Ncview
comes with no warranty; this option prints out a
fuller statement to this effect.
.SH ENVIRONMENT
.I Ncview
looks in directory NCVIEW_LIB_DIR for system-wide
colormap (.ncmap) files.
It also examines the user's environmental variable NCVIEWBASE for
the name of a directory which contains additional colormap
files.
If that is not defined, then colormaps are sought in
the user's home directory, and in the directory which
.I ncview
was run from.

Colormap files have 256 lines, each consisting of
one r g b triplet, where r, g, and b are integers in
the range of 0 to 255.
There should be only whitespace separating the
r, g, and b values on each line.
Colormap files end with the extension ".ncmap".
If
.I Ncview
does not find any colormaps, it will complain, and
supply a simple default map.
.PP
It is necessary to install the applications default
file, "Ncview", in your $XAPPLRESDIR directory for the 
program to function properly.
If the screen appears out of alignment, make
sure that this installation has been performed.

The application resources file recognizes the following
resources, in addition to the standard ones:

.TP
.B labelWidth
The width, in pixels, of the information labels at
the top of the main window.
If you generally use long titles and variable longnames,
you might want to increase this.
Default = 400.
.TP
.B buttonWidth
The width, in pixels, of the "variable" and "dimension"
buttons.
If you use long names for these, you might want to 
increase this value.
Default = 50.
.TP
.B nVarsPerRow
The number of variable buttons in a row before
a new one is started. 
Set to be aesthetically pleasing to you.
Default = 5.
.TP
.B deltaStep
The amount to step forward and backwards by when the
control key is held down while pushing the button.
If this value is less than 0, in indicates an
absolute number of steps to take; if this value
is greater than zero, it indicates the percent
(in integer form, from 1 to 100) of the total
file size to step.  
Default = 10 (ten percent).

.SH BUGS
Occasional bugs surface, especially when mixing
variables in different files.

Please send all bug reports to pierce@cirrus.ucsd.edu