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========================
Download and install Neo
========================
Neo is a pure Python package, so it should be easy to get it running on any
system.
Installing with pip
===================
You can install the latest published version of Neo and its dependencies using::
$ pip install neo
Dependencies
------------
* Python_ >= 3.8
* numpy_ >= 1.19.5
* quantities_ >= 0.12.1
Certain IO modules have additional dependencies. If these are not satisfied,
Neo will still install but the IO module that uses them will fail on loading:
* scipy >= 1.0.0 for NeoMatlabIO
* h5py >= 2.5 for KwikIO
* klusta for KwikIO
* igor2 >= 0.5.2 for IgorIO
* nixio >= 1.5 for NixIO
* stfio for StimfitIO
* pillow for TiffIO
These dependencies can be installed by specifying a comma-separated list with the
``pip install`` command, e.g.::
$ pip install neo[nixio,tiffio]
Or when installing a specific version of neo::
$ pip install neo[nixio,tiffio]==0.9.0
The following IO modules have additional dependencies:
* igorproio
* kwikio
* neomatlabio
* nixio
* stimfitio
* tiffio
Installing from source
======================
To download and install the package manually, download:
|neo_github_url|
Then:
.. parsed-literal::
$ unzip neo-|release|.zip
$ cd neo-|release|
$ pip install .
Alternatively, to install the latest version of Neo from the Git repository::
$ git clone git://github.com/NeuralEnsemble/python-neo.git
$ cd python-neo
$ pip install .
Installing with Conda
=====================
::
$ conda config --add channels conda-forge
$ conda config --set channel_priority strict
$ conda install -c conda-forge python-neo
Installing from a package repository
====================================
To install Neo if you're using Fedora_ Linux::
$ sudo dnf install python-neo
.. NeuroDebian seems out of date - still has Trac as homepage - how to update?
To install Neo if you're using the Spack_ package manager::
$ spack install py-neo
.. _`Python`: https://www.python.org/
.. _`numpy`: https://numpy.org/
.. _`quantities`: https://pypi.org/project/quantities/
.. _`pip`: https://pypi.org/project/pip/
.. _`setuptools`: http://pypi.python.org/pypi/setuptools
.. _Anaconda: https://www.anaconda.com/distribution/
.. _Fedora: https://src.fedoraproject.org/rpms/python-neo
.. _Spack: https://spack.readthedocs.io/en/latest/package_list.html#py-neo
|
