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! This is part of the netCDF package.
! Copyright 2020 University Corporation for Atmospheric Research/Unidata.
! See COPYRIGHT file for conditions of use.
! This program tests netCDF-4 parallel I/O with compression. It
! was added to resolve this issue:
! https://github.com/Unidata/netcdf-fortran/issues/264
! This code matches the code here:
! https://github.com/NOAA-EMC/fv3atm/blob/develop/io/module_write_netcdf_parallel.F90
! Ed Hartnett, 6/16/20
program f90tst_parallel_compressed
use typeSizes
use netcdf
implicit none
include 'mpif.h'
! File info.
character (len = *), parameter :: FILE_NAME = "f90tst_parallel_compressed.nc"
integer :: ncid, oldMode
! Dimensions
integer, parameter :: NUM_DIMS = 5
character (len = *), parameter :: dim_name(NUM_DIMS) = &
(/ 'grid_xt', 'grid_yt', 'pfull ', 'phalf ', 'time ' /)
integer, dimension(NUM_DIMS) :: dim_len = (/ 3072, 1536, 127, 128, 1 /)
integer :: dimid(NUM_DIMS)
! Variables.
integer, parameter :: NUM_VARS = 8
character (len = *), parameter :: var_name(NUM_VARS) = &
(/ 'grid_xt', 'lon ', 'grid_yt', 'lat ', 'pfull ', 'phalf ', 'time ', 'clwmr ' /)
integer ::varid(NUM_VARS)
integer :: var_type(NUM_VARS) = (/ nf90_double, nf90_double, nf90_double, &
nf90_double, nf90_float, nf90_float, nf90_double, nf90_float /)
integer :: var_ndims(NUM_VARS) = (/ 1, 2, 1, 2, 1, 1, 1, 4 /)
integer :: ideflate = 4
real*8 :: value_time = 2.0, value_time_in
real, allocatable :: value_clwmr(:,:,:,:)
integer :: phalf_loc_size, phalf_start
real, allocatable :: value_phalf_loc(:), value_phalf_loc_in(:)
integer :: pfull_loc_size, pfull_start
real, allocatable :: value_pfull_loc(:), value_pfull_loc_in(:)
integer :: grid_xt_loc_size, grid_xt_start
real, allocatable :: value_grid_xt_loc(:), value_grid_xt_loc_in(:)
integer :: grid_yt_loc_size, grid_yt_start
real, allocatable :: value_grid_yt_loc(:), value_grid_yt_loc_in(:)
integer :: lon_xt_loc_size, lon_xt_start, lon_yt_loc_size, lon_yt_start
real, allocatable :: value_lon_loc(:,:), value_lon_loc_in(:,:)
integer :: lat_xt_loc_size, lat_xt_start, lat_yt_loc_size, lat_yt_start
real, allocatable :: value_lat_loc(:,:), value_lat_loc_in(:,:)
real, allocatable :: value_clwmr_loc(:,:,:,:), value_clwmr_loc_in(:,:,:,:)
! These are for checking file contents.
character (len = 128) :: name_in
integer :: dim_len_in, xtype_in, ndims_in
integer :: nvars, ngatts, ndims, unlimdimid, file_format
integer :: x, y, v
integer :: npes, my_rank, i, j, k, ierr
call MPI_Init(ierr)
call MPI_Comm_rank(MPI_COMM_WORLD, my_rank, ierr)
call MPI_Comm_size(MPI_COMM_WORLD, npes, ierr)
if (my_rank .eq. 0) then
print *, '*** Testing compressed data writes with parallel I/O.'
endif
! There must be 4 procs for this test.
if (npes .ne. 4) then
print *, 'Sorry, this test program must be run on 4 processors.'
stop 1
endif
! Size of local (i.e. for this pe) grid_xt data.
grid_xt_loc_size = dim_len(1)/npes;
grid_xt_start = my_rank * grid_xt_loc_size + 1
if (my_rank .eq. npes - 1) then
grid_xt_loc_size = grid_xt_loc_size + mod(dim_len(1), npes)
endif
!print *, my_rank, 'grid_xt', dim_len(3), grid_xt_start, grid_xt_loc_size
! Size of local (i.e. for this pe) grid_yt data.
grid_yt_loc_size = dim_len(2)/npes;
grid_yt_start = my_rank * grid_yt_loc_size + 1
if (my_rank .eq. npes - 1) then
grid_yt_loc_size = grid_yt_loc_size + mod(dim_len(2), npes)
endif
!print *, my_rank, 'grid_yt', dim_len(3), grid_yt_start, grid_yt_loc_size
! Size of local (i.e. for this pe) pfull data.
pfull_loc_size = dim_len(3)/npes;
pfull_start = my_rank * pfull_loc_size + 1
if (my_rank .eq. npes - 1) then
pfull_loc_size = pfull_loc_size + mod(dim_len(3), npes)
endif
!print *, my_rank, 'pfull', dim_len(3), pfull_start, pfull_loc_size
! Size of local (i.e. for this pe) phalf data.
phalf_loc_size = dim_len(4)/npes;
phalf_start = my_rank * phalf_loc_size + 1
if (my_rank .eq. npes - 1) then
phalf_loc_size = phalf_loc_size + mod(dim_len(4), npes)
endif
!print *, my_rank, 'phalf', dim_len(4), phalf_start, phalf_loc_size
! Size of local arrays (i.e. for this pe) lon and lat data. This is
! specific to 4 pes.
lon_xt_loc_size = 1536
lat_xt_loc_size = 1536
if (my_rank .eq. 0 .or. my_rank .eq. 2) then
lon_xt_start = 1
lat_xt_start = 1
else
lon_xt_start = 1537
lat_xt_start = 1537
endif
lon_yt_loc_size = 768
lat_yt_loc_size = 768
if (my_rank .eq. 0 .or. my_rank .eq. 1) then
lon_yt_start = 1
lat_yt_start = 1
else
lon_yt_start = 769
lat_yt_start = 769
endif
! print *, my_rank, 'lon_xt_start', lon_xt_start, 'lon_yt_start', lon_yt_start
! print *, my_rank, 'lon_xt_loc_size', lon_xt_loc_size, 'lon_yt_loc_size', lon_yt_loc_size
! Allocate space on this pe to hold the data for this pe.
allocate(value_grid_xt_loc(grid_xt_loc_size))
allocate(value_grid_xt_loc_in(grid_xt_loc_size))
allocate(value_grid_yt_loc(grid_yt_loc_size))
allocate(value_grid_yt_loc_in(grid_yt_loc_size))
allocate(value_pfull_loc(pfull_loc_size))
allocate(value_pfull_loc_in(pfull_loc_size))
allocate(value_phalf_loc(phalf_loc_size))
allocate(value_phalf_loc_in(phalf_loc_size))
allocate(value_lon_loc(lon_xt_loc_size, lon_yt_loc_size))
allocate(value_lon_loc_in(lon_xt_loc_size, lon_yt_loc_size))
allocate(value_lat_loc(lat_xt_loc_size, lat_yt_loc_size))
allocate(value_lat_loc_in(lat_xt_loc_size, lat_yt_loc_size))
allocate(value_clwmr_loc(lat_xt_loc_size, lat_yt_loc_size, pfull_loc_size, 1))
allocate(value_clwmr_loc_in(lat_xt_loc_size, lat_yt_loc_size, pfull_loc_size, 1))
! Some fake data for this pe to write.
do i = 1, pfull_loc_size
value_pfull_loc(i) = my_rank * 100 + i;
end do
do i = 1, phalf_loc_size
value_phalf_loc(i) = my_rank * 100 + i;
end do
do i = 1, lon_xt_loc_size
do j = 1, lon_yt_loc_size
value_lon_loc(i, j) = my_rank * 100 + i +j
value_lat_loc(i, j) = my_rank * 100 + i +j
do k = 1, pfull_loc_size
value_clwmr_loc(i, j, k, 1) = my_rank * 100 + i + j + k
end do
end do
end do
! Create the netCDF file using parallel I/O.
call check(nf90_create(FILE_NAME, nf90_netcdf4, ncid, comm = MPI_COMM_WORLD, &
info = MPI_INFO_NULL))
! Turn off fill mode.
call check(nf90_set_fill(ncid, NF90_NOFILL, oldMode))
! Define dimension grid_xt.
call check(nf90_def_dim(ncid, trim(dim_name(1)), dim_len(1), dimid(1)))
! Define dimension grid_yt.
call check(nf90_def_dim(ncid, trim(dim_name(2)), dim_len(2), dimid(2)))
! Define variable grid_xt.
call check(nf90_def_var(ncid, trim(var_name(1)), var_type(1), dimids=(/dimid(1)/), varid=varid(1)))
call check(nf90_var_par_access(ncid, varid(1), NF90_INDEPENDENT))
! Define variable lon.
call check(nf90_def_var(ncid, trim(var_name(2)), var_type(2), dimids=(/dimid(1), dimid(2)/), varid=varid(2)))
! call check(nf90_var_par_access(ncid, varid(2), NF90_INDEPENDENT))
! Define variable grid_yt.
call check(nf90_def_var(ncid, trim(var_name(3)), var_type(3), dimids=(/dimid(2)/), varid=varid(3)))
call check(nf90_var_par_access(ncid, varid(3), NF90_INDEPENDENT))
! Define variable lat.
call check(nf90_def_var(ncid, trim(var_name(4)), var_type(4), dimids=(/dimid(1), dimid(2)/), varid=varid(4)))
call check(nf90_var_par_access(ncid, varid(4), NF90_INDEPENDENT))
! Define dimension pfull.
call check(nf90_def_dim(ncid, trim(dim_name(3)), dim_len(3), dimid(3)))
! Define variable pfull and write data.
call check(nf90_def_var(ncid, trim(var_name(5)), var_type(5), dimids=(/dimid(3)/), varid=varid(5)))
call check(nf90_var_par_access(ncid, varid(5), NF90_INDEPENDENT))
call check(nf90_enddef(ncid))
call check(nf90_put_var(ncid, varid(5), start=(/pfull_start/), count=(/pfull_loc_size/), values=value_pfull_loc))
call check(nf90_redef(ncid))
! Define dimension phalf.
call check(nf90_def_dim(ncid, trim(dim_name(4)), dim_len(4), dimid(4)))
! Define variable phalf and write data.
call check(nf90_def_var(ncid, trim(var_name(6)), var_type(6), dimids=(/dimid(4)/), varid=varid(6)))
call check(nf90_var_par_access(ncid, varid(6), NF90_INDEPENDENT))
call check(nf90_enddef(ncid))
call check(nf90_put_var(ncid, varid(6), start=(/phalf_start/), count=(/phalf_loc_size/), values=value_phalf_loc))
call check(nf90_redef(ncid))
! Define dimension time.
call check(nf90_def_dim(ncid, trim(dim_name(5)), dim_len(5), dimid(5)))
! Define variable time and write data.
call check(nf90_def_var(ncid, trim(var_name(7)), var_type(7), dimids=(/dimid(5)/), varid=varid(7)))
call check(nf90_var_par_access(ncid, varid(7), NF90_INDEPENDENT))
call check(nf90_enddef(ncid))
! In NOAA code, do all processors write the single time value?
if (my_rank .eq. 0) then
call check(nf90_put_var(ncid, varid(7), values=value_time))
endif
call check(nf90_redef(ncid))
! Write variable grid_xt data.
call check(nf90_enddef(ncid))
call check(nf90_put_var(ncid, varid(1), start=(/grid_xt_start/), count=(/grid_xt_loc_size/), values=value_grid_xt_loc))
call check(nf90_redef(ncid))
! Write lon data.
call check(nf90_enddef(ncid))
call check(nf90_put_var(ncid, varid(2), start=(/lon_xt_start, lon_yt_start/), count=(/lon_xt_loc_size, lon_yt_loc_size/), &
values=value_lon_loc))
call check(nf90_redef(ncid))
! Write grid_yt data.
call check(nf90_enddef(ncid))
call check(nf90_put_var(ncid, varid(3), start=(/grid_yt_start/), count=(/grid_yt_loc_size/), values=value_grid_yt_loc))
call check(nf90_redef(ncid))
! Write lat data.
call check(nf90_enddef(ncid))
call check(nf90_put_var(ncid, varid(4), start=(/lat_xt_start, lat_yt_start/), count=(/lat_xt_loc_size, lat_yt_loc_size/), &
values=value_lat_loc))
call check(nf90_redef(ncid))
! Define variable clwmr and write data (?)
call check(nf90_def_var(ncid, trim(var_name(8)), var_type(8), dimids=(/dimid(1), dimid(2), dimid(3), dimid(5)/), &
varid=varid(8), shuffle=.true., deflate_level=ideflate))
call check(nf90_var_par_access(ncid, varid(8), NF90_COLLECTIVE))
call check(nf90_enddef(ncid))
! call check(nf90_put_var(ncid, varid(8), values=value_clwmr))
call check(nf90_put_var(ncid, varid(8), start=(/lat_xt_start, lat_yt_start, pfull_start, 1/), &
count=(/lat_xt_loc_size, lat_yt_loc_size, pfull_loc_size, 1/), values=value_clwmr_loc))
call check(nf90_redef(ncid))
! Close the file.
call check(nf90_close(ncid))
! Reopen the file.
call check(nf90_open(FILE_NAME, nf90_nowrite, ncid, comm = MPI_COMM_WORLD, &
info = MPI_INFO_NULL))
! Check some stuff out.
call check(nf90_inquire(ncid, ndims, nvars, ngatts, unlimdimid, file_format))
if (ndims /= NUM_DIMS) stop 20
! Check the dimensions for correctness.
do i = 1, NUM_DIMS
call check(nf90_inquire_dimension(ncid, i, name_in, dim_len_in))
if (name_in .ne. trim(dim_name(i))) stop 101
if (dim_len_in .ne. dim_len(i)) stop 102
end do
! Check the variables for correctness.
do i = 1, NUM_VARS
call check(nf90_inquire_variable(ncid, i, name_in, xtype=xtype_in, ndims=ndims_in))
if (name_in .ne. trim(var_name(i))) stop 110
if (xtype_in .ne. var_type(i)) stop 111
if (ndims_in .ne. var_ndims(i)) stop 112
end do
! Check the grid_xt data.
call check(nf90_get_var(ncid, varid(1), start=(/grid_xt_start/), count=(/grid_xt_loc_size/), values=value_grid_xt_loc_in))
do i = 1, grid_xt_loc_size
!print *, value_grid_xt_loc_in(i), value_grid_xt_loc(i)
if (value_grid_xt_loc_in(i) .ne. value_grid_xt_loc(i)) stop 170
end do
! Check the lon data.
call check(nf90_get_var(ncid, varid(2), start=(/lon_xt_start, lon_yt_start/), count=(/lon_xt_loc_size, lon_yt_loc_size/), &
values=value_lon_loc_in))
do i = 1, lon_xt_loc_size
do j = 1, lon_yt_loc_size
if (value_lon_loc_in(i, j) .ne. value_lon_loc(i, j)) stop 180
end do
end do
! Check the grid_yt data.
call check(nf90_get_var(ncid, varid(3), start=(/grid_yt_start/), count=(/grid_yt_loc_size/), values=value_grid_yt_loc_in))
do i = 1, grid_yt_loc_size
!print *, value_grid_yt_loc_in(i), value_grid_yt_loc(i)
if (value_grid_yt_loc_in(i) .ne. value_grid_yt_loc(i)) stop 181
end do
! Check the lon data.
call check(nf90_get_var(ncid, varid(4), start=(/lat_xt_start, lat_yt_start/), count=(/lat_xt_loc_size, lat_yt_loc_size/), &
values=value_lat_loc_in))
do i = 1, lat_xt_loc_size
do j = 1, lat_yt_loc_size
if (value_lat_loc_in(i, j) .ne. value_lat_loc(i, j)) stop 180
end do
end do
! Check the pfull data.
call check(nf90_get_var(ncid, varid(5), start=(/pfull_start/), count=(/pfull_loc_size/), values=value_pfull_loc_in))
do i = 1, pfull_loc_size
!print *, value_pfull_loc_in(i), value_pfull_loc(i)
if (value_pfull_loc_in(i) .ne. value_pfull_loc(i)) stop 185
end do
! Check the phalf data.
call check(nf90_get_var(ncid, varid(6), start=(/phalf_start/), count=(/phalf_loc_size/), values=value_phalf_loc_in))
do i = 1, phalf_loc_size
if (value_phalf_loc_in(i) .ne. value_phalf_loc(i)) stop 200
end do
! Check the time value.
call check(nf90_get_var(ncid, varid(7), values=value_time_in))
if (value_time_in .ne. value_time) stop 300
! Check the clwmr value.
call check(nf90_get_var(ncid, varid(8), start=(/lat_xt_start, lat_yt_start, pfull_start, 1/), &
count=(/lat_xt_loc_size, lat_yt_loc_size, pfull_loc_size, 1/), values=value_clwmr_loc_in))
do i = 1, lat_xt_loc_size
do j = 1, lat_yt_loc_size
do k = 1, pfull_loc_size
if (value_clwmr_loc_in(i, j, k, 1) .ne. value_clwmr_loc(i, j, k, 1)) stop 300
end do
end do
end do
! Close the file.
call check(nf90_close(ncid))
! Free resources.
deallocate(value_grid_xt_loc)
deallocate(value_grid_xt_loc_in)
deallocate(value_grid_yt_loc)
deallocate(value_grid_yt_loc_in)
deallocate(value_pfull_loc)
deallocate(value_pfull_loc_in)
deallocate(value_phalf_loc)
deallocate(value_phalf_loc_in)
deallocate(value_lon_loc)
deallocate(value_lon_loc_in)
deallocate(value_lat_loc)
deallocate(value_lat_loc_in)
deallocate(value_clwmr_loc)
deallocate(value_clwmr_loc_in)
if (my_rank .eq. 0) print *,'*** SUCCESS!'
call MPI_Finalize(ierr)
contains
! This subroutine handles errors by printing an error message and
! exiting with a non-zero status.
subroutine check(errcode)
use netcdf
implicit none
integer, intent(in) :: errcode
if(errcode /= nf90_noerr) then
print *, 'Error: ', trim(nf90_strerror(errcode))
stop 99
endif
end subroutine check
end program f90tst_parallel_compressed
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