1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767
|
/*
Additonal optimizations:
1. slice covers all of exactly one chunk: we can just tranfer whole chunk to/from memory
*/
/*********************************************************************
* Copyright 2018, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*********************************************************************/
#include "zincludes.h"
#define WDEBUG
#undef DFALTOPTIMIZE
static int initialized = 0;
static unsigned int optimize = 0;
extern int NCZ_buildchunkkey(size_t R, const size64_t* chunkindices, char** keyp);
/* 0 => no debug */
static unsigned int wdebug = 1;
/* Forward */
static int NCZ_walk(NCZProjection** projv, NCZOdometer* chunkodom, NCZOdometer* slpodom, NCZOdometer* memodom, const struct Common* common, void* chunkdata);
static int rangecount(NCZChunkRange range);
static int readfromcache(void* source, size64_t* chunkindices, void** chunkdata);
static int iswholechunk(struct Common* common,NCZSlice*);
static int wholechunk_indices(struct Common* common, NCZSlice* slices, size64_t* chunkindices);
const char*
astype(int typesize, void* ptr)
{
switch(typesize) {
case 4: {
static char is[8];
snprintf(is,sizeof(is),"%u",*((unsigned int*)ptr));
return is;
} break;
default: break;
}
return "?";
}
/**************************************************/
int
ncz_chunking_init(void)
{
const char* val = NULL;
#ifdef DFALTOPTIMIZE
val = getenv("NCZ_NOOPTIMIZATION");
optimize = (val == NULL ? 1 : 0);
#else
optimize = 0;
#endif
val = getenv("NCZ_WDEBUG");
wdebug = (val == NULL ? 0 : atoi(val));
#ifdef WDEBUG
if(wdebug > 0) fprintf(stderr,"wdebug=%u\n",wdebug);
#endif
initialized = 1;
return NC_NOERR;
}
/**************************************************/
/**
Goal: Given the slices being applied to the variable, create
and walk all possible combinations of projection vectors that
can be evaluated to provide the output data.
Note that we do not actually pass NCZSlice but rather
(start,count,stride) vectors.
@param var Controlling variable
@param usreading reading vs writing
@param start start vector
@param stop stop vector
@param stride stride vector
@param memory target or source of data
@param typecode nc_type of type being written
@param walkfcn fcn parameter to actually transfer data
*/
int
NCZ_transferslice(NC_VAR_INFO_T* var, int reading,
size64_t* start, size64_t* count, size64_t* stride,
void* memory, nc_type typecode)
{
int r,stat = NC_NOERR;
size64_t dimlens[NC_MAX_VAR_DIMS];
size64_t chunklens[NC_MAX_VAR_DIMS];
size64_t memshape[NC_MAX_VAR_DIMS];
NCZSlice slices[NC_MAX_VAR_DIMS];
struct Common common;
NCZ_FILE_INFO_T* zfile = NULL;
NCZ_VAR_INFO_T* zvar = NULL;
size_t typesize;
if(!initialized) ncz_chunking_init();
if((stat = NC4_inq_atomic_type(typecode, NULL, &typesize))) goto done;
if(wdebug >= 1) {
size64_t stopvec[NC_MAX_VAR_DIMS];
for(r=0;r<var->ndims;r++) stopvec[r] = start[r]+(count[r]*stride[r]);
fprintf(stderr,"var: name=%s",var->hdr.name);
fprintf(stderr," start=%s",nczprint_vector(var->ndims,start));
fprintf(stderr," count=%s",nczprint_vector(var->ndims,count));
fprintf(stderr," stop=%s",nczprint_vector(var->ndims,stopvec));
fprintf(stderr," stride=%s\n",nczprint_vector(var->ndims,stride));
}
/* Fill in common */
memset(&common,0,sizeof(common));
common.var = var;
common.file = (var->container)->nc4_info;
zfile = common.file->format_file_info;
zvar = common.var->format_var_info;
common.reading = reading;
common.memory = memory;
common.typesize = typesize;
common.cache = zvar->cache;
/* We need to talk scalar into account */
common.rank = var->ndims;
common.scalar = zvar->scalar;
common.swap = (zfile->native_endianness == var->endianness ? 0 : 1);
common.chunkcount = 1;
for(r=0;r<common.rank+common.scalar;r++) {
if(common.scalar)
dimlens[r] = 1;
else
dimlens[r] = var->dim[r]->len;
chunklens[r] = var->chunksizes[r];
slices[r].start = start[r];
slices[r].stride = stride[r];
slices[r].stop = minimum(start[r]+(count[r]*stride[r]),dimlens[r]);
slices[r].len = dimlens[r];
common.chunkcount *= chunklens[r];
memshape[r] = count[r];
}
if(wdebug >= 1) {
fprintf(stderr,"\trank=%d",common.rank);
if(!common.scalar) {
fprintf(stderr," dimlens=%s",nczprint_vector(common.rank,dimlens));
fprintf(stderr," chunklens=%s",nczprint_vector(common.rank,chunklens));
fprintf(stderr," memshape=%s",nczprint_vector(common.rank,memshape));
}
fprintf(stderr,"\n");
}
common.dimlens = dimlens; /* BAD: storing stack vector in a pointer; do not free */
common.chunklens = chunklens; /* ditto */
common.memshape = memshape; /* ditto */
common.reader.source = ((NCZ_VAR_INFO_T*)(var->format_var_info))->cache;
common.reader.read = readfromcache;
if(common.scalar) {
if((stat = NCZ_transferscalar(&common))) goto done;
}
else {
if((stat = NCZ_transfer(&common, slices))) goto done;
}
done:
NCZ_clearcommon(&common);
return stat;
}
/*
Walk the possible projections.
Broken out so we can use it for unit testing
@param common common parameters
@param slices
*/
int
NCZ_transfer(struct Common* common, NCZSlice* slices)
{
int stat = NC_NOERR;
NCZOdometer* chunkodom = NULL;
NCZOdometer* slpodom = NULL;
NCZOdometer* memodom = NULL;
void* chunkdata = NULL;
int wholechunk = 0;
/*
We will need three sets of odometers.
1. Chunk odometer to walk the chunk ranges to get all possible
combinations of chunkranges over all dimensions.
2. For each chunk odometer set of indices, we need a projection
odometer that walks the set of projection slices for a given
set of chunk ranges over all dimensions.
3. A memory odometer that walks the memory data to specify
the locations in memory for read/write
*/
if(wdebug >= 2) {
fprintf(stderr,"slices=%s\n",nczprint_slices(common->rank,slices));
}
if((stat = NCZ_projectslices(common->dimlens, common->chunklens, slices,
common, &chunkodom)))
goto done;
if(wdebug >= 4) {
fprintf(stderr,"allprojections:\n%s",nczprint_allsliceprojections(common->rank,common->allprojections)); fflush(stderr);
}
wholechunk = iswholechunk(common,slices);
if(wholechunk) {
/* Implement a whole chunk read optimization; this is a rare occurrence
where the the slices cover all of a single chunk.
*/
size64_t chunkindices[NC_MAX_VAR_DIMS];
unsigned char* memptr;
unsigned char* slpptr;
/* Which chunk are we getting? */
if((stat=wholechunk_indices(common,slices,chunkindices))) goto done;
if(wdebug >= 1)
fprintf(stderr,"case: wholechunk: chunkindices: %s\n",nczprint_vector(common->rank,chunkindices));
/* Read the chunk */
switch ((stat = common->reader.read(common->reader.source, chunkindices, &chunkdata))) {
case NC_EEMPTY: /* cache created the chunk */
break;
case NC_NOERR: break;
default: goto done;
}
/* Figure out memory address */
memptr = ((unsigned char*)common->memory);
slpptr = ((unsigned char*)chunkdata);
if(common->reading) {
memcpy(memptr,slpptr,common->chunkcount*common->typesize);
} else {
memcpy(slpptr,memptr,common->chunkcount*common->typesize);
}
// transfern(common,slpptr,memptr,common->chunkcount,1,chunkdata);
if(zutest && zutest->tests & UTEST_WHOLECHUNK)
zutest->print(UTEST_WHOLECHUNK, common, chunkindices);
goto done;
}
/* iterate over the odometer: all combination of chunk
indices in the projections */
for(;nczodom_more(chunkodom);) {
int r;
size64_t* chunkindices = NULL;
NCZSlice slpslices[NC_MAX_VAR_DIMS];
NCZSlice memslices[NC_MAX_VAR_DIMS];
NCZProjection* proj[NC_MAX_VAR_DIMS];
size64_t shape[NC_MAX_VAR_DIMS];
chunkindices = nczodom_indices(chunkodom);
if(wdebug >= 1) {
fprintf(stderr,"chunkindices: %s\n",nczprint_vector(common->rank,chunkindices));
}
for(r=0;r<common->rank;r++) {
NCZSliceProjections* slp = &common->allprojections[r];
NCZProjection* projlist = slp->projections;
size64_t indexr = chunkindices[r];
/* use chunkindices[r] to find the corresponding projection slice */
/* We must take into account that the chunkindex of projlist[r]
may be greater than zero */
/* note the 2 level indexing */
indexr -= slp->range.start;
NCZProjection* pr = &projlist[indexr];
proj[r] = pr;
}
if(wdebug > 0) {
fprintf(stderr,"Selected projections:\n");
for(r=0;r<common->rank;r++) {
fprintf(stderr,"\t[%d] %s\n",r,nczprint_projection(*proj[r]));
shape[r] = proj[r]->iocount;
}
fprintf(stderr,"\tshape=%s\n",nczprint_vector(common->rank,shape));
}
/* See if any of the projections is a skip; if so, then move to the next chunk indices */
for(r=0;r<common->rank;r++) {
if(proj[r]->skip) goto next;
}
for(r=0;r<common->rank;r++) {
slpslices[r] = proj[r]->chunkslice;
memslices[r] = proj[r]->memslice;
}
if(zutest && zutest->tests & UTEST_TRANSFER)
zutest->print(UTEST_TRANSFER, common, chunkodom, slpslices, memslices);
/* Read from cache */
stat = common->reader.read(common->reader.source, chunkindices, &chunkdata);
switch (stat) {
case NC_EEMPTY: /* cache created the chunk */
break;
case NC_NOERR: break;
default: goto done;
}
slpodom = nczodom_fromslices(common->rank,slpslices);
memodom = nczodom_fromslices(common->rank,memslices);
{ /* walk with odometer */
if(wdebug >= 1)
fprintf(stderr,"case: odometer:\n");
/* This is the key action: walk this set of slices and transfer data */
if((stat = NCZ_walk(proj,chunkodom,slpodom,memodom,common,chunkdata))) goto done;
}
next:
nczodom_free(slpodom); slpodom = NULL;
nczodom_free(memodom); memodom = NULL;
nczodom_next(chunkodom);
}
done:
nczodom_free(slpodom);
nczodom_free(memodom);
nczodom_free(chunkodom);
return stat;
}
#ifdef WDEBUG
static void
wdebug2(const struct Common* common, unsigned char* slpptr, unsigned char* memptr, size_t avail, size_t stride, void* chunkdata)
{
unsigned char* slpbase = chunkdata;
unsigned char* membase = common->memory;
unsigned slpoff = (unsigned)(slpptr - slpbase);
unsigned memoff = (unsigned)(memptr - membase);
unsigned slpidx = slpoff / common->typesize;
unsigned memidx = memoff / common->typesize;
unsigned value;
fprintf(stderr,"wdebug2: %s: [%u/%d] %u->%u",
common->reading?"read":"write",
(unsigned)avail,
(unsigned)stride,
(unsigned)(common->reading?slpidx:memidx),
(unsigned)(common->reading?memidx:slpidx)
);
if(common->reading)
value = ((unsigned*)slpptr)[0];
else
value = ((unsigned*)memptr)[0];
fprintf(stderr,"; [%u]=%u",(unsigned)(common->reading?slpidx:memidx),value);
fprintf(stderr,"\n");
}
#else
#define wdebug2(common,slpptr,memptr,avail,stride,chunkdata)
#endif
/*
@param projv
@param chunkodom
@param slpodom
@param memodom
@param common
@param chunkdata
@return NC_NOERR
*/
static int
NCZ_walk(NCZProjection** projv, NCZOdometer* chunkodom, NCZOdometer* slpodom, NCZOdometer* memodom, const struct Common* common, void* chunkdata)
{
int stat = NC_NOERR;
for(;;) {
size64_t slpoffset = 0;
size64_t memoffset = 0;
size64_t slpavail = 0;
size64_t memavail = 0;
size64_t laststride = 0;
unsigned char* memptr0 = NULL;
unsigned char* slpptr0 = NULL;
if(!nczodom_more(slpodom)) break;
if(wdebug >= 3) {
fprintf(stderr,"xx.slp: odom: %s\n",nczprint_odom(slpodom));
fprintf(stderr,"xx.mem: odom: %s\n",nczprint_odom(memodom));
}
/* Convert the indices to a linear offset WRT to chunk indices */
slpoffset = nczodom_offset(slpodom);
memoffset = nczodom_offset(memodom);
/* transfer data between these addresses */
memptr0 = ((unsigned char*)common->memory)+(memoffset * common->typesize);
slpptr0 = ((unsigned char*)chunkdata)+(slpoffset * common->typesize);
LOG((1,"%s: slpptr0=%p memptr0=%p slpoffset=%llu memoffset=%lld",__func__,slpptr0,memptr0,slpoffset,memoffset));
if(zutest && zutest->tests & UTEST_WALK)
zutest->print(UTEST_WALK, common, chunkodom, slpodom, memodom);
/* See if we can transfer multiple values at one shot */
laststride = slpodom->stride[common->rank-1];
if(laststride == 1) {
slpavail = nczodom_avail(slpodom); /* How much can we read? */
memavail = nczodom_avail(memodom);
assert(memavail == slpavail);
nczodom_skipavail(slpodom);
nczodom_skipavail(memodom);
} else {
slpavail = 1;
memavail = 1;
}
if(slpavail > 0) {
if(wdebug > 0) wdebug2(common,slpptr0,memptr0,slpavail,laststride,chunkdata);
if(common->reading) {
memcpy(memptr0,slpptr0,slpavail*common->typesize);
} else {
memcpy(slpptr0,memptr0,slpavail*common->typesize);
}
}
// if((stat = transfern(common,slpptr0,memptr0,avail,nczodom_laststride(slpodom),chunkdata)))goto done;
nczodom_next(memodom);
nczodom_next(slpodom);
}
return stat;
}
#if 0
static void
wdebug1(const struct Common* common, unsigned char* srcptr, unsigned char* dstptr, size_t count, size_t stride, void* chunkdata, const char* tag)
{
unsigned char* dstbase = (common->reading?common->memory:chunkdata);
unsigned char* srcbase = (common->reading?chunkdata:common->memory);
unsigned dstoff = (unsigned)(dstptr - dstbase);
unsigned srcoff = (unsigned)(srcptr - srcbase);
unsigned srcidx = srcoff / sizeof(unsigned);
fprintf(stderr,"%s: %s: [%u/%d] %u->%u",
tag,
common->reading?"read":"write",
(unsigned)count,
(unsigned)stride,
(unsigned)(srcoff/common->typesize),
(unsigned)(dstoff/common->typesize)
);
#if 0
fprintf(stderr,"\t%s[%u]=%u\n",(common->reading?"chunkdata":"memdata"),
// 0,((unsigned*)srcptr)[0]
srcidx,((unsigned*)srcbase)[srcidx]
);
#endif
#if 0
{ size_t len = common->typesize*count;
fprintf(stderr," | [%u] %u->%u\n",(unsigned)len,(unsigned)srcoff,(unsigned)dstoff);
}
#endif
fprintf(stderr,"\n");
}
#else
#define wdebug1(common,srcptr,dstptr,count,srcstride,dststride,chunkdata,tag)
#endif
#if 0
static int
transfern(const struct Common* common, unsigned char* slpptr, unsigned char* memptr, size_t avail, size_t slpstride, void* chunkdata)
{
int stat = NC_NOERR;
size_t typesize = common->typesize;
size_t len = typesize*avail;
size_t m,s;
if(common->reading) {
if(slpstride == 1)
memcpy(memptr,slpptr,len); /* straight copy */
else {
for(m=0,s=0;s<avail;s+=slpstride,m++) {
size_t soffset = s*typesize;
size_t moffset = m*typesize;
memcpy(memptr+moffset,slpptr+soffset,typesize);
}
}
if(common->swap)
NCZ_swapatomicdata(len,memptr,common->typesize);
} else { /*writing*/
unsigned char* srcbase = (common->reading?chunkdata:common->memory);
unsigned srcoff = (unsigned)(memptr - srcbase);
unsigned srcidx = srcoff / sizeof(unsigned); (void)srcidx;
if(slpstride == 1)
memcpy(slpptr,memptr,len); /* straight copy */
else {
for(m=0,s=0;s<avail;s+=slpstride,m++) {
size_t soffset = s*typesize;
size_t moffset = m*typesize;
memcpy(slpptr+soffset,memptr+moffset,typesize);
}
}
if(common->swap)
NCZ_swapatomicdata(len,slpptr,common->typesize);
}
return THROW(stat);
}
#endif
#if 0
/* This function may not be necessary if code in zvar does it instead */
static int
NCZ_fillchunk(void* chunkdata, struct Common* common)
{
int stat = NC_NOERR;
if(common->fillvalue == NULL) {
memset(chunkdata,0,common->chunkcount*common->typesize);
goto done;
}
if(common->cache->fillchunk == NULL) {
/* Get fill chunk*/
if((stat = NCZ_create_fill_chunk(common->cache->chunksize, common->typesize, common->fillvalue, &common->cache->fillchunk)))
goto done;
}
memcpy(chunkdata,common->cache->fillchunk,common->cache->chunksize);
done:
return stat;
}
#endif
/* Break out this piece so we can use it for unit testing */
int
NCZ_projectslices(size64_t* dimlens,
size64_t* chunklens,
NCZSlice* slices,
struct Common* common,
NCZOdometer** odomp)
{
int stat = NC_NOERR;
int r;
NCZOdometer* odom = NULL;
NCZSliceProjections* allprojections = NULL;
NCZChunkRange ranges[NC_MAX_VAR_DIMS];
size64_t start[NC_MAX_VAR_DIMS];
size64_t stop[NC_MAX_VAR_DIMS];
size64_t stride[NC_MAX_VAR_DIMS];
size64_t len[NC_MAX_VAR_DIMS];
if((allprojections = calloc(common->rank,sizeof(NCZSliceProjections))) == NULL)
{stat = NC_ENOMEM; goto done;}
memset(ranges,0,sizeof(ranges));
/* Package common arguments */
common->dimlens = dimlens;
common->chunklens = chunklens;
/* Compute the chunk ranges for each slice in a given dim */
if((stat = NCZ_compute_chunk_ranges(common->rank,slices,common->chunklens,ranges)))
goto done;
/* Compute the slice index vector */
if((stat=NCZ_compute_all_slice_projections(common,slices,ranges,allprojections)))
goto done;
/* Verify */
for(r=0;r<common->rank;r++) {
assert(rangecount(ranges[r]) == allprojections[r].count);
}
/* Compute the shape vector */
for(r=0;r<common->rank;r++) {
int j;
size64_t iocount = 0;
NCZProjection* projections = allprojections[r].projections;
for(j=0;j<allprojections[r].count;j++) {
NCZProjection* proj = &projections[j];
iocount += proj->iocount;
}
common->shape[r] = iocount;
}
common->allprojections = allprojections;
allprojections = NULL;
/* Create an odometer to walk all the range combinations */
for(r=0;r<common->rank;r++) {
start[r] = ranges[r].start;
stop[r] = ranges[r].stop;
stride[r] = 1;
len[r] = ceildiv(common->dimlens[r],common->chunklens[r]);
}
if((odom = nczodom_new(common->rank,start,stop,stride,len)) == NULL)
{stat = NC_ENOMEM; goto done;}
if(odomp) *odomp = odom;
done:
/* reclaim allprojections if !NULL */
if(allprojections != NULL) {
NCZ_clearsliceprojections(common->rank,allprojections);
nullfree(allprojections);
}
return stat;
}
/***************************************************/
/* Utilities */
static int
rangecount(NCZChunkRange range)
{
return (range.stop - range.start);
}
/* Goal: Given a set of per-dimension indices,
compute the corresponding linear position.
*/
size64_t
NCZ_computelinearoffset(size_t R, const size64_t* indices, const size64_t* dimlens)
{
size64_t offset;
int i;
offset = 0;
for(i=0;i<R;i++) {
offset *= dimlens[i];
offset += indices[i];
}
return offset;
}
#if 0
/* Goal: Given a linear position
compute the corresponding set of R indices
*/
void
NCZ_offset2indices(size_t R, size64_t offset, const size64_t* dimlens, size64_t* indices)
{
int i;
for(i=0;i<R;i++) {
indices[i] = offset % dimlens[i];
offset = offset / dimlens[i];
}
}
#endif
/**************************************************/
/* Unit test entry points */
int
NCZ_chunkindexodom(int rank, const NCZChunkRange* ranges, size64_t* chunkcounts, NCZOdometer** odomp)
{
int stat = NC_NOERR;
int r;
NCZOdometer* odom = NULL;
size64_t start[NC_MAX_VAR_DIMS];
size64_t stop[NC_MAX_VAR_DIMS];
size64_t stride[NC_MAX_VAR_DIMS];
size64_t len[NC_MAX_VAR_DIMS];
for(r=0;r<rank;r++) {
start[r] = ranges[r].start;
stop[r] = ranges[r].stop;
stride[r] = 1;
len[r] = chunkcounts[r];
}
if((odom = nczodom_new(rank, start, stop, stride, len))==NULL)
{stat = NC_ENOMEM; goto done;}
if(odomp) {*odomp = odom; odom = NULL;}
done:
nczodom_free(odom);
return stat;
}
static int
readfromcache(void* source, size64_t* chunkindices, void** chunkdatap)
{
return NCZ_read_cache_chunk((struct NCZChunkCache*)source, chunkindices, chunkdatap);
}
void
NCZ_clearcommon(struct Common* common)
{
NCZ_clearsliceprojections(common->rank,common->allprojections);
nullfree(common->allprojections);
}
/* Does the User want all of one and only chunk? */
static int
iswholechunk(struct Common* common, NCZSlice* slices)
{
int i;
/* Check that slices cover a whole chunk */
for(i=0;i<common->rank;i++) {
if(!(slices[i].stride == 1 /* no point skipping */
&& (slices[i].start % common->chunklens[i]) == 0 /* starting at beginning of chunk */
&& (slices[i].stop - slices[i].start) /* stop-start = edge length */
== common->chunklens[i] /* edge length == chunk length */
))
return 0; /* slices do not cover a whole chunk */
}
return 1;
}
static int
wholechunk_indices(struct Common* common, NCZSlice* slices, size64_t* chunkindices)
{
int i;
for(i=0;i<common->rank;i++)
chunkindices[i] = (slices[i].start / common->chunklens[i]);
return NC_NOERR;
}
/**************************************************/
/* Scalar variable support */
/*
@param common common parameters
*/
int
NCZ_transferscalar(struct Common* common)
{
int stat = NC_NOERR;
void* chunkdata = NULL;
size64_t chunkindices[NC_MAX_VAR_DIMS];
unsigned char* memptr, *slpptr;
/* Read from single chunk from cache */
chunkindices[0] = 0;
switch ((stat = common->reader.read(common->reader.source, chunkindices, &chunkdata))) {
case NC_EEMPTY: /* cache created the chunk */
break;
case NC_NOERR: break;
default: goto done;
}
/* Figure out memory address */
memptr = ((unsigned char*)common->memory);
slpptr = ((unsigned char*)chunkdata);
if(common->reading)
memcpy(memptr,slpptr,common->chunkcount*common->typesize);
else
memcpy(slpptr,memptr,common->chunkcount*common->typesize);
done:
return stat;
}
/* Debugging Interface: return the contents of a specified chunk */
EXTERNL int
NCZ_read_chunk(int ncid, int varid, size64_t* zindices, void* chunkdata)
{
int stat = NC_NOERR;
NC_VAR_INFO_T* var = NULL;
NCZ_VAR_INFO_T* zvar;
struct NCZChunkCache* cache = NULL;
void* cachedata = NULL;
if ((stat = nc4_find_grp_h5_var(ncid, varid, NULL, NULL, &var)))
return THROW(stat);
zvar = (NCZ_VAR_INFO_T*)var->format_var_info;
cache = zvar->cache;
if((stat = NCZ_read_cache_chunk(cache,zindices,&cachedata))) goto done;
if(chunkdata)
memcpy(chunkdata,cachedata,cache->chunksize);
done:
return stat;
}
|