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/*********************************************************************
* Copyright 2018, UCAR/Unidata
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
*********************************************************************/
#include "config.h"
#include "ncdispatch.h"
#include "ncd4dispatch.h"
#include "nc4internal.h"
#include "d4includes.h"
#include "d4odom.h"
#include <stddef.h>
/* Forward */
static int getvarx(int gid, int varid, NCD4INFO**, NCD4node** varp, nc_type* xtypep, size_t*, nc_type* nc4typep, size_t*);
static int mapvars(NCD4meta* dapmeta, NCD4meta* dmrmeta, int inferredchecksumming);
int
NCD4_get_vara(int ncid, int varid,
const size_t *start, const size_t *edges,
void *value,
nc_type memtype)
{
int ret;
/* TODO: optimize since we know stride is 1 */
ret = NCD4_get_vars(ncid,varid,start,edges,NC_stride_one,value,memtype);
return THROW(ret);
}
int
NCD4_get_vars(int gid, int varid,
const size_t *start, const size_t *edges, const ptrdiff_t* stride,
void *memoryin, nc_type xtype)
{
size_t i;
int ret;
NCD4INFO* info;
NCD4meta* meta;
NCD4node* ncvar;
NCD4node* nctype;
D4odometer* odom = NULL;
nc_type nc4type;
size_t nc4size, xsize, dapsize;
void* instance = NULL; /* Staging area in case we have to convert */
NClist* blobs = NULL;
size_t rank;
size_t dimsizes[NC_MAX_VAR_DIMS];
d4size_t dimproduct;
size_t dstpos;
NCD4offset* offset = NULL;
/* Get netcdf var metadata and data */
if((ret=getvarx(gid, varid, &info, &ncvar, &xtype, &xsize, &nc4type, &nc4size)))
{goto done;}
meta = info->dmrmetadata;
nctype = ncvar->basetype;
rank = nclistlength(ncvar->dims);
blobs = nclistnew();
/* Get the type's dapsize */
dapsize = nctype->meta.dapsize;
instance = malloc(nc4size);
if(instance == NULL)
{ret = THROW(NC_ENOMEM); goto done;}
dimproduct = NCD4_dimproduct(ncvar);
/* build size vector */
for(i=0;i<rank;i++) {
NCD4node* dim = nclistget(ncvar->dims,i);
dimsizes[i] = dim->dim.size;
}
/* Extract and desired subset of data */
if(rank > 0)
odom = d4odom_new(rank,start,edges,stride,dimsizes);
else
odom = d4scalarodom_new();
dstpos = 0; /* We always write into dst starting at position 0*/
for(;d4odom_more(odom);dstpos++) {
void* xpos;
void* dst;
d4size_t pos;
pos = d4odom_next(odom);
if(pos >= dimproduct) {
ret = THROW(NC_EINVALCOORDS);
goto done;
}
xpos = ((char*)memoryin)+(xsize * dstpos); /* ultimate destination */
/* We need to compute the offset in the dap4 data of this instance;
for fixed size types, this is easy, otherwise we have to walk
the variable size type
*/
/* Allocate the offset object */
if(offset) free(offset); /* Reclaim last loop */
offset = NULL;
offset = BUILDOFFSET(NULL,0);
BLOB2OFFSET(offset,ncvar->data.dap4data);
/* Move offset to the pos'th element of the array */
if(nctype->meta.isfixedsize) {
INCR(offset,(dapsize*pos));
} else {
/* We have to walk to the pos'th location in the data */
if((ret=NCD4_moveto(meta,ncvar,pos,offset)))
{goto done;}
}
dst = instance;
if((ret=NCD4_movetoinstance(meta,nctype,offset,&dst,blobs)))
{goto done;}
if(xtype == nc4type) {
/* We can just copy out the data */
memcpy(xpos,instance,nc4size);
} else { /* Need to convert */
if((ret=NCD4_convert(nc4type,xtype,xpos,instance,1)))
{goto done;}
}
}
done:
if(offset) free(offset); /* Reclaim last loop */
/* cleanup */
if(odom != NULL)
d4odom_free(odom);
if(instance != NULL)
free(instance);
if(ret != NC_NOERR) { /* reclaim all malloc'd data if there is an error*/
for(i=0;i<nclistlength(blobs);i++) {
nullfree(nclistget(blobs,i));
}
}
if(blobs) nclistfree(blobs);
return (ret);
}
static int
getvarx(int gid, int varid, NCD4INFO** infop, NCD4node** varp,
nc_type* xtypep, size_t* xsizep, nc_type* nc4typep, size_t* nc4sizep)
{
int ret = NC_NOERR;
NC* ncp = NULL;
NCD4INFO* info = NULL;
NCD4meta* dmrmeta = NULL;
NCD4node* group = NULL;
NCD4node* var = NULL;
NCD4node* type = NULL;
nc_type xtype, actualtype;
size_t instancesize, xsize;
NCURI* ceuri = NULL; /* Constrained uri */
NCD4meta* dapmeta = NULL;
NCD4response* dapresp = NULL;
if((ret = NC_check_id(gid, (NC**)&ncp)) != NC_NOERR)
goto done;
info = getdap(ncp);
dmrmeta = info->dmrmetadata;
if((ret = NCD4_findvar(ncp,gid,varid,&var,&group))) goto done;
type = var->basetype;
actualtype = type->meta.id;
instancesize = type->meta.memsize;
/* Figure out the type conversion, if any */
xtype = *xtypep;
if(xtype == NC_NAT)
xtype = actualtype;
if(xtype != actualtype && xtype > NC_MAX_ATOMIC_TYPE)
return THROW(NC_EBADTYPE);
if((xtype == NC_CHAR || xtype == NC_STRING)
&& (actualtype != NC_CHAR && actualtype != NC_STRING))
return THROW(NC_ECHAR);
if(xtype <= NC_MAX_ATOMIC_TYPE)
xsize = NCD4_typesize(xtype);
else
xsize = instancesize;
/* If we already have valid data, then just return */
if(var->data.valid) goto validated;
/* Ok, we need to read from the server */
/* Add the variable to the URI, unless the URI is already constrained or is unconstrainable */
ceuri = ncuriclone(info->dmruri);
/* append the request for a specific variable */
if(ncuriquerylookup(ceuri,DAP4CE) == NULL && !FLAGSET(info->controls.flags,NCF_UNCONSTRAINABLE)) {
ncurisetquerykey(ceuri,strdup("dap4.ce"),NCD4_makeFQN(var));
}
/* Read and process the data */
/* Setup the meta-data for the DAP */
if((ret=NCD4_newMeta(info,&dapmeta))) goto done;
if((ret=NCD4_newResponse(info,&dapresp))) goto done;
dapresp->mode = NCD4_DAP;
nclistpush(info->responses,dapresp);
if((ret=NCD4_readDAP(info, ceuri, dapresp))) goto done;
/* Extract DMR and dechunk the data part */
if((ret=NCD4_dechunk(dapresp))) goto done;
/* Process the dmr part */
if((ret=NCD4_parse(dapmeta,dapresp,1))) goto done;
/* See if we are checksumming */
if((ret=NCD4_inferChecksums(dapmeta,dapresp))) goto done;
/* connect variables and corresponding dap data */
if((ret = NCD4_parcelvars(dapmeta,dapresp))) goto done;
/* Process checksums and byte-order swapping */
if((ret = NCD4_processdata(dapmeta,dapresp))) goto done;
/* Transfer and process the data */
if((ret = mapvars(dapmeta,dmrmeta,dapresp->inferredchecksumming))) goto done;
validated:
/* Return relevant info */
if(infop) *infop = info;
if(xtypep) *xtypep = xtype;
if(xsizep) *xsizep = xsize;
if(nc4typep) *nc4typep = actualtype;
if(nc4sizep) *nc4sizep = instancesize;
if(varp) *varp = var;
done:
if(dapmeta) NCD4_reclaimMeta(dapmeta);
ncurifree(ceuri);
if(dapresp != NULL && dapresp->error.message != NULL)
NCD4_reporterror(dapresp,ceuri); /* Make sure the user sees this */
return THROW(ret);
}
#if 0
static NCD4node*
findbyname(const char* name, NClist* nodes)
{
int i;
for(i=0;i<nclistlength(nodes);i++) {
NCD4node* node = (NCD4node*)nclistget(nodes,i);
if(strcmp(name,node->name)==0)
return node;
}
return NULL;
}
#endif
static int
matchvar(NCD4meta* dmrmeta, NCD4node* dapvar, NCD4node** dmrvarp)
{
size_t i;
int ret = NC_NOERR;
NCD4node* x = NULL;
NClist* dappath = nclistnew();
NClist* dmrpath = nclistnew(); /* compute path for this dmr var */
int found = 0;
NCD4node* match = NULL;
/* Capture the dap path starting at root and ending at the dapvar (assumed to be topvar) */
for(x=dapvar;x != NULL;x=x->container) nclistinsert(dappath,0,x);
/* Iterate over all variable nodes to find matching one */
for(i=0;i<nclistlength(dmrmeta->allnodes);i++) {
NCD4node* node = (NCD4node*)nclistget(dmrmeta->allnodes,i);
if(ISVAR(node->sort) && strcmp(node->name,dapvar->name)==0) { /* possible candidate */
size_t j;
found = 0;
nclistclear(dmrpath);
for(x=node;x != NULL;x=x->container) nclistinsert(dmrpath,0,x);
if(nclistlength(dmrpath) == nclistlength(dappath)) { /* same length paths */
/* compare paths: name and sort */
for(found=1,j=0;j<nclistlength(dmrpath);j++) {
NCD4node* pdmr = (NCD4node*)nclistget(dmrpath,j);
NCD4node* pdap = (NCD4node*)nclistget(dappath,j);
if(pdmr->sort != pdap->sort || strcmp(pdmr->name,pdap->name) != 0)
{found = 0; break;}
}
if(found) {match = node; break;}
}
}
}
if(!found) {ret = NC_EINVAL; goto done;}
if(dmrvarp) *dmrvarp = match;
done:
nclistfree(dappath);
nclistfree(dmrpath);
return THROW(ret);
}
/*
Map each toplevel dap var to the corresponding
toplevel dmr var and transfer necessary info;
*/
static int
mapvars(NCD4meta* dapmeta, NCD4meta* dmrmeta, int inferredchecksumming)
{
size_t i;
int ret = NC_NOERR;
NCD4node* daproot = dapmeta->root;
NClist* daptop = NULL; /* top variables in dap tree */
/* Get top level variables from the dap node tree */
daptop = nclistnew();
NCD4_getToplevelVars(dapmeta,daproot,daptop);
/* Match up the dap top variables with the dmr top variables */
for(i=0;i<nclistlength(daptop);i++) {
NCD4node* dapvar = (NCD4node*)nclistget(daptop,i);
NCD4node* dmrvar = NULL;
if((ret=matchvar(dmrmeta,dapvar,&dmrvar))) goto done;
/* Transfer info from dap var to dmr var */
dmrvar->data = dapvar->data;
memset(&dapvar->data,0,sizeof(NCD4vardata));
dmrvar->data.valid = 1;
}
done:
nclistfree(daptop);
return THROW(ret);
}
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