| 12
 3
 4
 5
 6
 7
 8
 9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
 100
 101
 102
 103
 104
 105
 106
 107
 108
 109
 110
 111
 112
 113
 114
 115
 116
 117
 118
 119
 120
 121
 122
 123
 124
 125
 126
 127
 128
 129
 130
 131
 132
 133
 134
 135
 136
 137
 138
 139
 140
 141
 142
 143
 144
 145
 146
 147
 148
 149
 150
 151
 152
 153
 154
 155
 156
 157
 158
 159
 160
 161
 162
 163
 164
 165
 166
 167
 168
 169
 170
 171
 172
 173
 174
 175
 176
 177
 178
 179
 180
 181
 182
 183
 184
 185
 186
 187
 188
 189
 190
 191
 192
 193
 194
 195
 196
 197
 198
 199
 200
 201
 202
 203
 204
 205
 206
 207
 208
 209
 210
 211
 212
 213
 214
 215
 216
 217
 218
 219
 220
 221
 222
 223
 224
 225
 226
 227
 228
 229
 230
 231
 232
 233
 234
 235
 236
 237
 238
 239
 240
 241
 242
 243
 244
 245
 246
 247
 248
 249
 250
 251
 252
 253
 254
 255
 256
 257
 258
 259
 260
 261
 262
 263
 264
 265
 266
 267
 268
 269
 270
 271
 272
 273
 274
 275
 276
 277
 278
 279
 280
 281
 282
 283
 284
 285
 286
 287
 288
 289
 290
 291
 292
 293
 294
 295
 296
 297
 298
 299
 300
 301
 302
 303
 304
 305
 306
 307
 308
 309
 310
 311
 312
 313
 314
 315
 316
 317
 318
 319
 320
 321
 322
 323
 324
 325
 326
 327
 328
 329
 330
 331
 332
 333
 334
 335
 336
 337
 338
 339
 340
 341
 342
 343
 344
 345
 346
 347
 348
 349
 350
 351
 352
 353
 354
 355
 356
 357
 358
 359
 360
 361
 362
 363
 364
 365
 366
 367
 368
 369
 370
 371
 372
 373
 374
 375
 376
 377
 378
 379
 380
 381
 382
 383
 384
 385
 386
 387
 388
 389
 390
 391
 392
 393
 394
 395
 396
 397
 398
 399
 400
 401
 402
 403
 404
 405
 406
 407
 408
 409
 410
 411
 412
 413
 414
 415
 416
 417
 418
 419
 420
 421
 422
 423
 424
 425
 426
 427
 428
 429
 430
 431
 432
 433
 434
 435
 436
 437
 438
 439
 440
 441
 442
 443
 444
 445
 446
 447
 448
 449
 450
 451
 452
 453
 454
 455
 456
 457
 458
 459
 460
 461
 462
 463
 464
 465
 466
 467
 468
 469
 470
 471
 472
 473
 474
 475
 476
 477
 478
 479
 480
 481
 482
 483
 484
 485
 486
 487
 488
 489
 490
 491
 492
 493
 494
 495
 496
 497
 498
 499
 500
 501
 502
 503
 504
 505
 506
 507
 508
 509
 510
 511
 512
 513
 514
 515
 516
 517
 518
 519
 520
 521
 522
 523
 524
 525
 526
 527
 528
 529
 530
 531
 532
 533
 534
 535
 536
 537
 538
 539
 540
 541
 542
 543
 544
 545
 546
 547
 548
 549
 550
 551
 552
 553
 554
 555
 556
 557
 558
 559
 560
 561
 562
 563
 564
 565
 566
 567
 568
 569
 570
 571
 572
 573
 574
 575
 576
 577
 578
 579
 580
 581
 582
 583
 584
 585
 586
 587
 588
 589
 590
 591
 592
 593
 594
 595
 596
 597
 598
 599
 600
 601
 602
 603
 604
 605
 606
 607
 608
 609
 610
 611
 612
 613
 614
 615
 616
 617
 618
 619
 620
 621
 622
 623
 624
 625
 626
 627
 628
 629
 630
 631
 632
 633
 634
 635
 636
 637
 638
 639
 640
 641
 642
 643
 644
 645
 646
 647
 648
 649
 650
 651
 652
 653
 654
 655
 656
 657
 658
 659
 660
 661
 662
 663
 664
 665
 666
 667
 668
 669
 670
 671
 672
 673
 674
 675
 676
 677
 678
 679
 680
 681
 682
 683
 684
 685
 686
 687
 688
 689
 690
 691
 692
 693
 694
 695
 696
 697
 698
 699
 700
 701
 702
 703
 704
 705
 706
 707
 708
 709
 710
 711
 712
 713
 714
 715
 716
 717
 718
 719
 720
 721
 722
 723
 724
 725
 726
 727
 728
 729
 730
 731
 732
 733
 734
 735
 736
 737
 738
 739
 740
 741
 742
 743
 744
 745
 746
 747
 748
 749
 750
 751
 752
 753
 754
 755
 756
 757
 758
 759
 760
 761
 762
 763
 764
 765
 766
 767
 768
 769
 770
 771
 772
 773
 774
 775
 776
 777
 778
 779
 780
 781
 782
 783
 784
 785
 786
 787
 788
 789
 790
 791
 792
 793
 794
 795
 796
 797
 798
 799
 800
 801
 802
 803
 804
 805
 806
 807
 808
 809
 810
 811
 812
 813
 814
 815
 816
 817
 818
 819
 820
 821
 822
 823
 824
 825
 826
 827
 828
 829
 830
 831
 832
 833
 834
 835
 836
 837
 838
 839
 840
 841
 842
 843
 844
 845
 846
 847
 848
 849
 850
 851
 852
 853
 854
 855
 856
 857
 858
 859
 860
 861
 862
 863
 864
 865
 866
 867
 868
 869
 870
 871
 872
 873
 874
 875
 876
 877
 878
 879
 880
 881
 882
 883
 884
 885
 886
 887
 888
 889
 890
 891
 892
 893
 894
 895
 896
 897
 898
 899
 900
 901
 902
 903
 904
 905
 906
 907
 908
 909
 910
 911
 912
 913
 914
 915
 916
 917
 918
 919
 920
 921
 922
 923
 924
 925
 926
 927
 928
 929
 930
 931
 932
 933
 934
 935
 936
 937
 938
 939
 940
 941
 942
 943
 944
 945
 946
 947
 948
 949
 950
 951
 952
 953
 954
 955
 956
 957
 958
 959
 960
 961
 962
 963
 964
 965
 966
 967
 968
 969
 970
 971
 972
 973
 974
 975
 976
 977
 978
 979
 980
 981
 982
 983
 984
 985
 986
 987
 988
 989
 990
 991
 992
 993
 994
 995
 996
 997
 998
 999
 1000
 1001
 1002
 1003
 1004
 1005
 1006
 1007
 1008
 1009
 1010
 1011
 1012
 1013
 1014
 1015
 1016
 1017
 1018
 1019
 1020
 1021
 1022
 1023
 1024
 1025
 1026
 1027
 1028
 1029
 1030
 1031
 1032
 1033
 1034
 1035
 1036
 1037
 1038
 1039
 1040
 1041
 1042
 1043
 1044
 1045
 1046
 1047
 1048
 1049
 1050
 1051
 1052
 1053
 1054
 1055
 1056
 1057
 1058
 1059
 1060
 1061
 1062
 1063
 1064
 1065
 1066
 1067
 1068
 1069
 1070
 1071
 1072
 1073
 1074
 1075
 1076
 1077
 1078
 1079
 1080
 1081
 1082
 1083
 1084
 1085
 1086
 1087
 1088
 1089
 1090
 1091
 1092
 1093
 1094
 1095
 1096
 1097
 1098
 1099
 1100
 1101
 1102
 1103
 1104
 1105
 1106
 1107
 1108
 1109
 1110
 1111
 1112
 1113
 1114
 1115
 1116
 1117
 1118
 1119
 1120
 1121
 1122
 1123
 1124
 1125
 1126
 1127
 1128
 1129
 1130
 1131
 1132
 1133
 1134
 1135
 1136
 1137
 1138
 1139
 1140
 1141
 1142
 1143
 1144
 1145
 1146
 1147
 1148
 1149
 1150
 1151
 1152
 1153
 1154
 1155
 1156
 1157
 1158
 1159
 1160
 1161
 1162
 1163
 1164
 1165
 1166
 1167
 1168
 1169
 1170
 1171
 1172
 1173
 1174
 1175
 1176
 1177
 1178
 1179
 1180
 1181
 1182
 1183
 1184
 1185
 1186
 1187
 1188
 1189
 1190
 1191
 1192
 1193
 1194
 1195
 1196
 1197
 1198
 1199
 1200
 1201
 1202
 1203
 1204
 1205
 1206
 1207
 1208
 1209
 1210
 1211
 1212
 1213
 1214
 1215
 1216
 1217
 1218
 1219
 1220
 1221
 1222
 1223
 1224
 1225
 1226
 1227
 1228
 1229
 1230
 1231
 1232
 1233
 1234
 1235
 1236
 1237
 1238
 1239
 1240
 1241
 1242
 1243
 1244
 1245
 1246
 1247
 1248
 1249
 1250
 1251
 1252
 1253
 1254
 1255
 1256
 1257
 1258
 1259
 1260
 1261
 1262
 1263
 1264
 1265
 1266
 1267
 1268
 1269
 1270
 1271
 1272
 1273
 1274
 1275
 1276
 1277
 1278
 1279
 1280
 1281
 1282
 1283
 1284
 1285
 1286
 1287
 1288
 1289
 1290
 1291
 1292
 1293
 1294
 1295
 1296
 1297
 1298
 1299
 1300
 1301
 1302
 1303
 1304
 1305
 1306
 1307
 1308
 1309
 1310
 1311
 1312
 1313
 1314
 1315
 1316
 1317
 1318
 1319
 1320
 1321
 1322
 1323
 1324
 1325
 1326
 1327
 1328
 1329
 1330
 1331
 1332
 1333
 1334
 1335
 1336
 1337
 1338
 1339
 1340
 1341
 1342
 1343
 1344
 1345
 1346
 1347
 1348
 1349
 1350
 1351
 1352
 1353
 1354
 1355
 1356
 1357
 1358
 1359
 1360
 1361
 1362
 1363
 1364
 1365
 1366
 1367
 1368
 1369
 1370
 1371
 1372
 1373
 1374
 1375
 1376
 1377
 1378
 1379
 1380
 1381
 1382
 1383
 1384
 1385
 1386
 1387
 1388
 1389
 1390
 1391
 1392
 1393
 1394
 1395
 1396
 1397
 1398
 1399
 1400
 1401
 1402
 1403
 1404
 1405
 1406
 1407
 1408
 1409
 1410
 1411
 1412
 1413
 1414
 1415
 1416
 1417
 1418
 1419
 1420
 1421
 1422
 1423
 1424
 1425
 1426
 1427
 1428
 1429
 1430
 1431
 1432
 1433
 1434
 1435
 1436
 1437
 1438
 1439
 1440
 1441
 1442
 1443
 1444
 1445
 1446
 1447
 1448
 1449
 1450
 1451
 1452
 1453
 1454
 1455
 1456
 1457
 1458
 1459
 1460
 1461
 1462
 1463
 1464
 1465
 1466
 1467
 1468
 1469
 1470
 1471
 1472
 1473
 1474
 1475
 1476
 1477
 1478
 1479
 1480
 1481
 1482
 1483
 1484
 1485
 1486
 1487
 1488
 1489
 1490
 1491
 1492
 1493
 1494
 1495
 1496
 1497
 1498
 1499
 1500
 1501
 1502
 1503
 1504
 1505
 1506
 1507
 1508
 1509
 1510
 1511
 1512
 1513
 1514
 1515
 1516
 1517
 1518
 1519
 1520
 1521
 1522
 1523
 1524
 1525
 1526
 1527
 1528
 1529
 1530
 1531
 1532
 1533
 1534
 1535
 1536
 1537
 1538
 1539
 1540
 1541
 1542
 1543
 1544
 1545
 1546
 1547
 1548
 1549
 1550
 1551
 1552
 1553
 1554
 1555
 1556
 1557
 1558
 1559
 1560
 1561
 1562
 1563
 1564
 1565
 1566
 1567
 1568
 1569
 1570
 1571
 1572
 1573
 1574
 1575
 1576
 1577
 1578
 1579
 1580
 1581
 1582
 1583
 1584
 1585
 1586
 1587
 1588
 1589
 1590
 1591
 1592
 1593
 1594
 1595
 1596
 1597
 1598
 1599
 1600
 1601
 1602
 1603
 1604
 1605
 1606
 1607
 1608
 1609
 1610
 1611
 1612
 1613
 1614
 1615
 1616
 1617
 1618
 1619
 1620
 1621
 1622
 1623
 1624
 1625
 1626
 1627
 1628
 1629
 1630
 1631
 1632
 1633
 1634
 1635
 1636
 1637
 1638
 1639
 1640
 1641
 1642
 1643
 1644
 1645
 1646
 1647
 1648
 1649
 1650
 1651
 1652
 1653
 1654
 1655
 1656
 1657
 1658
 1659
 1660
 1661
 1662
 1663
 1664
 1665
 1666
 1667
 1668
 1669
 1670
 1671
 1672
 1673
 1674
 1675
 1676
 1677
 1678
 1679
 1680
 1681
 1682
 1683
 1684
 1685
 1686
 1687
 1688
 1689
 1690
 1691
 1692
 1693
 1694
 1695
 1696
 1697
 1698
 1699
 1700
 1701
 1702
 1703
 1704
 1705
 1706
 1707
 1708
 1709
 1710
 1711
 1712
 1713
 1714
 1715
 1716
 1717
 1718
 1719
 1720
 1721
 1722
 1723
 1724
 1725
 1726
 1727
 1728
 1729
 1730
 1731
 1732
 1733
 1734
 1735
 1736
 1737
 1738
 1739
 1740
 1741
 1742
 1743
 1744
 1745
 1746
 1747
 1748
 1749
 1750
 1751
 1752
 1753
 1754
 1755
 1756
 1757
 1758
 1759
 1760
 1761
 1762
 1763
 1764
 1765
 1766
 1767
 1768
 1769
 1770
 1771
 1772
 1773
 1774
 1775
 1776
 1777
 1778
 1779
 1780
 1781
 1782
 1783
 1784
 1785
 1786
 1787
 1788
 1789
 1790
 1791
 1792
 1793
 1794
 1795
 1796
 1797
 1798
 1799
 1800
 1801
 1802
 1803
 1804
 1805
 1806
 1807
 1808
 1809
 1810
 1811
 1812
 1813
 1814
 1815
 1816
 1817
 1818
 1819
 1820
 1821
 1822
 1823
 1824
 1825
 1826
 1827
 1828
 1829
 1830
 1831
 1832
 1833
 1834
 1835
 1836
 1837
 1838
 1839
 1840
 1841
 1842
 1843
 1844
 1845
 1846
 1847
 1848
 1849
 1850
 1851
 1852
 1853
 1854
 1855
 1856
 1857
 1858
 1859
 1860
 1861
 1862
 1863
 1864
 1865
 1866
 1867
 1868
 1869
 1870
 1871
 1872
 1873
 1874
 1875
 1876
 1877
 1878
 1879
 1880
 1881
 1882
 1883
 1884
 1885
 1886
 1887
 1888
 1889
 1890
 1891
 1892
 1893
 1894
 1895
 1896
 1897
 1898
 1899
 1900
 1901
 1902
 1903
 1904
 1905
 1906
 1907
 1908
 1909
 1910
 1911
 1912
 1913
 1914
 1915
 1916
 1917
 1918
 1919
 
 | /*
 *	Copyright 2018, University Corporation for Atmospheric Research
 *	See netcdf/COPYRIGHT file for copying and redistribution conditions.
 */
/* $Id: posixio.c,v 1.89 2010/05/22 21:59:08 dmh Exp $ */
/* For MinGW Build */
#if HAVE_CONFIG_H
#include <config.h>
#endif
#include <stdio.h>
#include <assert.h>
#include <stdlib.h>
#include <errno.h>
#include <string.h>
#ifdef HAVE_FCNTL_H
#include <fcntl.h>
#endif
#ifdef HAVE_SYS_TYPES_H
#include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
#include <sys/stat.h>
#endif
/* Windows platforms, including MinGW, Cygwin, Visual Studio */
#if defined(_WIN32) || defined(_WIN64)
#include <windows.h>
#include <winbase.h>
#include <io.h>
#endif
#ifdef HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifndef NC_NOERR
#define NC_NOERR 0
#endif
#ifndef SEEK_SET
#define SEEK_SET 0
#define SEEK_CUR 1
#define SEEK_END 2
#endif
#include "ncpathmgr.h"
#include "ncio.h"
#include "fbits.h"
#include "rnd.h"
/* #define INSTRUMENT 1 */
#if INSTRUMENT /* debugging */
#undef NDEBUG
#include <stdio.h>
#include "instr.h"
#endif
#undef MIN  /* system may define MIN somewhere and complain */
#define MIN(mm,nn) (((mm) < (nn)) ? (mm) : (nn))
#if !defined(NDEBUG) && !defined(X_INT_MAX)
#define  X_INT_MAX 2147483647
#endif
#if 0 /* !defined(NDEBUG) && !defined(X_ALIGN) */
#define  X_ALIGN 4
#else
#undef X_ALIGN
#endif
/* These are needed on mingw to get a dll to compile. They really
 * should be provided in sys/stats.h, but what the heck. Let's not be
 * too picky! */
#ifndef S_IRGRP
#define S_IRGRP   0000040
#endif
#ifndef S_IROTH
#define S_IROTH   0000004
#endif
#ifndef S_IWGRP
#define S_IWGRP   0000020
#endif
#ifndef S_IWOTH
#define S_IWOTH   0000002
#endif
/*Forward*/
static int ncio_px_filesize(ncio *nciop, off_t *filesizep);
static int ncio_px_pad_length(ncio *nciop, off_t length);
static int ncio_px_close(ncio *nciop, int doUnlink);
static int ncio_spx_close(ncio *nciop, int doUnlink);
/*
 * Define the following for debugging.
 */
/* #define ALWAYS_NC_SHARE 1 */
/* Begin OS */
#ifndef POSIXIO_DEFAULT_PAGESIZE
#define POSIXIO_DEFAULT_PAGESIZE 4096
#endif
/*! Cross-platform file length.
 *
 * Some versions of Visual Studio are throwing errno 132
 * when fstat is used on large files.  This function is
 * an attempt to get around that.
 *
 * @par fd File Descriptor.
 * @return -1 on error, length of file (in bytes) otherwise.
 */
static off_t nc_get_filelen(const int fd) {
  off_t flen;
#ifdef HAVE_FILE_LENGTH_I64
  __int64 file_len = 0;
  if ((file_len = _filelengthi64(fd)) < 0) {
    return file_len;
  }
  flen = (off_t)file_len;
#else
  int res = 0;
  struct stat sb;
  if((res = fstat(fd,&sb)) <0)
    return res;
  flen = sb.st_size;
#endif
  return flen;
}
/*
 * What is the system pagesize?
 */
static size_t
pagesize(void)
{
  size_t pgsz;
#if defined(_WIN32) || defined(_WIN64)
  SYSTEM_INFO info;
#endif
/* Hmm, aren't standards great? */
#if defined(_SC_PAGE_SIZE) && !defined(_SC_PAGESIZE)
#define _SC_PAGESIZE _SC_PAGE_SIZE
#endif
  /* For MinGW Builds */
#if defined(_WIN32) || defined(_WIN64)
  GetSystemInfo(&info);
  pgsz = (size_t)info.dwPageSize;
#elif defined(_SC_PAGESIZE)
  pgsz = (size_t)sysconf(_SC_PAGESIZE);
#elif defined(HAVE_GETPAGESIZE)
  pgsz = (size_t) getpagesize();
#endif
  if(pgsz > 0)
    return (size_t) pgsz;
   return (size_t)POSIXIO_DEFAULT_PAGESIZE;
}
/*
 * What is the preferred I/O block size?
 */
static size_t
blksize(int fd)
{
#ifdef HAVE_STRUCT_STAT_ST_BLKSIZE
#ifdef HAVE_SYS_STAT_H
	struct stat sb;
	if (fstat(fd, &sb) > -1)
	{
		if(sb.st_blksize >= 8192)
			return (size_t) sb.st_blksize;
		return 8192;
	}
	/* else, silent in the face of error */
#else
	NC_UNUSED(fd);
#endif
#else
	NC_UNUSED(fd);
#endif
	return (size_t) 2 * pagesize();
}
/*
 * Sortof like ftruncate, except won't make the
 * file shorter.
 */
static int
fgrow(const int fd, const off_t len)
{
	struct stat sb;
	if (fstat(fd, &sb) < 0)
		return errno;
	if (len < sb.st_size)
		return NC_NOERR;
	{
	    const long dumb = 0;
	    /* we don't use ftruncate() due to problem with FAT32 file systems */
	    /* cache current position */
	    const off_t pos = lseek(fd, 0, SEEK_CUR);
	    if(pos < 0)
		return errno;
	    if (lseek(fd, len-sizeof(dumb), SEEK_SET) < 0)
		return errno;
	    if(write(fd, &dumb, sizeof(dumb)) < 0)
		return errno;
	    if (lseek(fd, pos, SEEK_SET) < 0)
		return errno;
	}
	return NC_NOERR;
}
/*
 * Sortof like ftruncate, except won't make the file shorter.  Differs
 * from fgrow by only writing one byte at designated seek position, if
 * needed.
 */
static int
fgrow2(const int fd, const off_t len)
{
  /* There is a problem with fstat on Windows based systems
     which manifests (so far) when Config RELEASE is built.
     Use _filelengthi64 isntead.
     See https://github.com/Unidata/netcdf-c/issues/188
  */
  off_t file_len = nc_get_filelen(fd);
  if(file_len < 0) return errno;
  if(len <= file_len)
    return NC_NOERR;
  {
    const char dumb = 0;
	    /* we don't use ftruncate() due to problem with FAT32 file systems */
	    /* cache current position */
	    const off_t pos = lseek(fd, 0, SEEK_CUR);
	    if(pos < 0)
		return errno;
	    if (lseek(fd, len-1, SEEK_SET) < 0)
		return errno;
	    if(write(fd, &dumb, sizeof(dumb)) < 0)
		return errno;
	    if (lseek(fd, pos, SEEK_SET) < 0)
		return errno;
	}
	return NC_NOERR;
}
/* End OS */
/* Begin px */
/* The px_ functions are for posix systems, when NC_SHARE is not in
   effect. */
/* Write out a "page" of data to the file. The size of the page
   (i.e. the extent) varies.
   nciop - pointer to the file metadata.
   offset - where in the file should this page be written.
   extent - how many bytes should be written.
   vp - pointer to the data to write.
   posp - pointer to current position in file, updated after write.
*/
static int
px_pgout(ncio *const nciop,
	off_t const offset,  const size_t extent,
	void *const vp, off_t *posp)
{
    ssize_t partial;
    size_t nextent;
    char *nvp;
#ifdef X_ALIGN
	assert(offset % X_ALIGN == 0);
#endif
	assert(*posp == OFF_NONE || *posp == lseek(nciop->fd, 0, SEEK_CUR));
	if(*posp != offset)
	{
		if(lseek(nciop->fd, offset, SEEK_SET) != offset)
		{
			return errno;
		}
		*posp = offset;
	}
	/* Old write, didn't handle partial writes correctly */
	/* if(write(nciop->fd, vp, extent) != (ssize_t) extent) */
	/* { */
	/* 	return errno; */
	/* } */
	nextent = extent;
        nvp = vp;
	while((partial = write(nciop->fd, nvp, nextent)) != -1) {
	    if(partial == nextent)
		break;
	    nvp += partial;
	    nextent -= partial;
	}
	if(partial == -1)
	    return errno;
	*posp += extent;
	return NC_NOERR;
}
/*! Read in a page of data.
  @param[in] nciop  A pointer to the ncio struct for this file.
  @param[in] offset The byte offset in file where read starts.
  @param[in] extent The size of the page that will be read.
  @param[in] vp     A pointer to where the data will end up.
  @param[in,out] nreadp Returned number of bytes actually read (may be less than extent).
  @param[in,out] posp The pointer to current position in file, updated after read.
  @return Return 0 on success, otherwise an error code.
*/
static int
px_pgin(ncio *const nciop,
	off_t const offset, const size_t extent,
	void *const vp, size_t *nreadp, off_t *posp)
{
	int status;
	ssize_t nread;
#ifdef X_ALIGN
	assert(offset % X_ALIGN == 0);
	assert(extent % X_ALIGN == 0);
#endif
    /* *posp == OFF_NONE (-1) on first call. This
       is problematic because lseek also returns -1
       on error. Use errno instead. */
    if(*posp != OFF_NONE && *posp != lseek(nciop->fd, 0, SEEK_CUR)) {
      if(errno) {
        status = errno;
        printf("Error %d: %s\n",errno,strerror(errno));
        return status;
      }
    }
	if(*posp != offset)
	{
		if(lseek(nciop->fd, offset, SEEK_SET) != offset)
		{
			status = errno;
			return status;
		}
		*posp = offset;
	}
	errno = 0;
    /* Handle the case where the read is interrupted
       by a signal (see NCF-337,
       http://pubs.opengroup.org/onlinepubs/009695399/functions/read.html)
       When this happens, nread will (should) be the bytes read, and
       errno will be set to EINTR.  On older systems nread might be -1.
       If this is the case, there's not a whole lot we can do about it
       as we can't compute any offsets, so we will attempt to read again.
       This *feels* like it could lead to an infinite loop, but it shouldn't
       unless the read is being constantly interrupted by a signal, and is
       on an older system which returns -1 instead of bytexs read.
       The case where it's a short read is already handled by the function
       (according to the comment below, at least). */
    do {
      nread = read(nciop->fd,vp,extent);
    } while (nread == -1 && errno == EINTR);
    if(nread != (ssize_t)extent) {
      status = errno;
      if( nread == -1 || (status != EINTR && status != NC_NOERR))
        return status;
      /* else it's okay we read less than asked for */
      (void) memset((char *)vp + nread, 0, (ssize_t)extent - nread);
    }
    *nreadp = nread;
	*posp += nread;
	return NC_NOERR;
}
/* This struct is for POSIX systems, with NC_SHARE not in effect. If
   NC_SHARE is used, see ncio_spx.
   blksz - block size for reads and writes to file.
   pos - current read/write position in file.
   bf_offset - file offset corresponding to start of memory buffer
   bf_extent - number of bytes in I/O request
   bf_cnt - number of bytes available in buffer
   bf_base - pointer to beginning of buffer.
   bf_rflags - buffer region flags (defined in ncio.h) tell the lock
   status, read/write permissions, and modification status of regions
   of data in the buffer.
   bf_refcount - buffer reference count.
   slave - used in moves.
*/
typedef struct ncio_px {
	size_t blksz;
	off_t pos;
	/* buffer */
	off_t	bf_offset;
	size_t	bf_extent;
	size_t	bf_cnt;
	void	*bf_base;
	int	bf_rflags;
	int	bf_refcount;
	/* chain for double buffering in px_move */
	struct ncio_px *slave;
} ncio_px;
/*ARGSUSED*/
/* This function indicates the file region starting at offset may be
   released.
   This is for POSIX, without NC_SHARE.  If called with RGN_MODIFIED
   flag, sets the modified flag in pxp->bf_rflags and decrements the
   reference count.
   pxp - pointer to posix non-share ncio_px struct.
   offset - file offset for beginning of to region to be
   released.
   rflags - only RGN_MODIFIED is relevant to this function, others ignored
*/
static int
px_rel(ncio_px *const pxp, off_t offset, int rflags)
{
	assert(pxp->bf_offset <= offset
		 && offset < pxp->bf_offset + (off_t) pxp->bf_extent);
	assert(pIf(fIsSet(rflags, RGN_MODIFIED),
		fIsSet(pxp->bf_rflags, RGN_WRITE)));
	NC_UNUSED(offset);
	if(fIsSet(rflags, RGN_MODIFIED))
	{
		fSet(pxp->bf_rflags, RGN_MODIFIED);
	}
	pxp->bf_refcount--;
	return NC_NOERR;
}
/* This function indicates the file region starting at offset may be
   released.  Each read or write to the file is bracketed by a call to
   the "get" region function and a call to the "rel" region function.
   If you only read from the memory region, release it with a flag of
   0, if you modify the region, release it with a flag of
   RGN_MODIFIED.
   For POSIX system, without NC_SHARE, this becomes the rel function
   pointed to by the ncio rel function pointer. It merely checks for
   file write permission, then calls px_rel to do everything.
   nciop - pointer to ncio struct.
   offset - num bytes from beginning of buffer to region to be
   released.
   rflags - only RGN_MODIFIED is relevant to this function, others ignored
*/
static int
ncio_px_rel(ncio *const nciop, off_t offset, int rflags)
{
	ncio_px *const pxp = (ncio_px *)nciop->pvt;
	if(fIsSet(rflags, RGN_MODIFIED) && !fIsSet(nciop->ioflags, NC_WRITE))
		return EPERM; /* attempt to write readonly file */
	return px_rel(pxp, offset, rflags);
}
/* POSIX get. This will "make a region available." Since we're using
   buffered IO, this means that if needed, we'll fetch a new page from
   the file, otherwise, just return a pointer to what's in memory
   already.
   nciop - pointer to ncio struct, containing file info.
   pxp - pointer to ncio_px struct, which contains special metadate
   for posix files without NC_SHARE.
   offset - start byte of region to get.
   extent - how many bytes to read.
   rflags - One of the RGN_* flags defined in ncio.h.
   vpp - pointer to pointer that will receive data.
   NOTES:
   * For blkoffset round offset down to the nearest pxp->blksz. This
   provides the offset (in bytes) to the beginning of the block that
   holds the current offset.
   * diff tells how far into the current block we are.
   * For blkextent round up to the number of bytes at the beginning of
   the next block, after the one that holds our current position, plus
   whatever extra (i.e. the extent) that we are about to grab.
   * The blkextent can't be more than twice the pxp->blksz. That's
   because the pxp->blksize is the sizehint, and in ncio_px_init2 the
   buffer (pointed to by pxp->bf-base) is allocated with 2 *
   *sizehintp. This is checked (unnecessarily) more than once in
   asserts.
   * If this is called on a newly opened file, pxp->bf_offset will be
   OFF_NONE and we'll jump to label pgin to immediately read in a
   page.
*/
static int
px_get(ncio *const nciop, ncio_px *const pxp,
		off_t offset, size_t extent,
		int rflags,
		void **const vpp)
{
	int status = NC_NOERR;
	const off_t blkoffset = _RNDDOWN(offset, (off_t)pxp->blksz);
	off_t diff = (size_t)(offset - blkoffset);
	off_t blkextent = _RNDUP(diff + extent, pxp->blksz);
	assert(extent != 0);
	assert(extent < X_INT_MAX); /* sanity check */
	assert(offset >= 0); /* sanity check */
	if(2 * pxp->blksz < blkextent)
		return E2BIG; /* TODO: temporary kludge */
	if(pxp->bf_offset == OFF_NONE)
	{
		/* Uninitialized */
		if(pxp->bf_base == NULL)
		{
			assert(pxp->bf_extent == 0);
			assert(blkextent <= 2 * pxp->blksz);
			pxp->bf_base = malloc(2 * pxp->blksz);
			if(pxp->bf_base == NULL)
				return ENOMEM;
		}
		goto pgin;
	}
	/* else */
	assert(blkextent <= 2 * pxp->blksz);
	if(blkoffset == pxp->bf_offset)
	{
		/* hit */
 		if(blkextent > pxp->bf_extent)
		{
			/* page in upper */
			void *const middle =
			 	(void *)((char *)pxp->bf_base + pxp->blksz);
			assert(pxp->bf_extent == pxp->blksz);
			status = px_pgin(nciop,
				 pxp->bf_offset + (off_t)pxp->blksz,
				 pxp->blksz,
				 middle,
				 &pxp->bf_cnt,
				 &pxp->pos);
			if(status != NC_NOERR)
				return status;
			pxp->bf_extent = 2 * pxp->blksz;
			pxp->bf_cnt += pxp->blksz;
		}
		goto done;
	}
	/* else */
	if(pxp->bf_extent > pxp->blksz
		 && blkoffset == pxp->bf_offset + (off_t)pxp->blksz)
	{
		/* hit in upper half */
		if(blkextent == pxp->blksz)
		{
			/* all in upper half, no fault needed */
			diff += pxp->blksz;
			goto done;
		}
		/* else */
		if(pxp->bf_cnt > pxp->blksz)
		{
			/* data in upper half */
			void *const middle =
				(void *)((char *)pxp->bf_base + pxp->blksz);
			assert(pxp->bf_extent == 2 * pxp->blksz);
			if(fIsSet(pxp->bf_rflags, RGN_MODIFIED))
			{
				/* page out lower half */
				assert(pxp->bf_refcount <= 0);
				status = px_pgout(nciop,
					pxp->bf_offset,
					pxp->blksz,
					pxp->bf_base,
					&pxp->pos);
				if(status != NC_NOERR)
					return status;
			}
			pxp->bf_cnt -= pxp->blksz;
			/* copy upper half into lower half */
			(void) memcpy(pxp->bf_base, middle, pxp->bf_cnt);
		}
		else		/* added to fix nofill bug */
		{
			assert(pxp->bf_extent == 2 * pxp->blksz);
			/* still have to page out lower half, if modified */
			if(fIsSet(pxp->bf_rflags, RGN_MODIFIED))
			{
				assert(pxp->bf_refcount <= 0);
				status = px_pgout(nciop,
					pxp->bf_offset,
					pxp->blksz,
					pxp->bf_base,
					&pxp->pos);
				if(status != NC_NOERR)
					return status;
			}
		}
		pxp->bf_offset = blkoffset;
		/* pxp->bf_extent = pxp->blksz; */
 		assert(blkextent == 2 * pxp->blksz);
		{
			/* page in upper */
			void *const middle =
			 	(void *)((char *)pxp->bf_base + pxp->blksz);
			status = px_pgin(nciop,
				 pxp->bf_offset + (off_t)pxp->blksz,
				 pxp->blksz,
				 middle,
				 &pxp->bf_cnt,
				 &pxp->pos);
			if(status != NC_NOERR)
				return status;
			pxp->bf_extent = 2 * pxp->blksz;
			pxp->bf_cnt += pxp->blksz;
		}
		goto done;
	}
	/* else */
	if(blkoffset == pxp->bf_offset - (off_t)pxp->blksz)
	{
		/* wants the page below */
		void *const middle =
			(void *)((char *)pxp->bf_base + pxp->blksz);
		size_t upper_cnt = 0;
		if(pxp->bf_cnt > pxp->blksz)
		{
			/* data in upper half */
			assert(pxp->bf_extent == 2 * pxp->blksz);
			if(fIsSet(pxp->bf_rflags, RGN_MODIFIED))
			{
				/* page out upper half */
				assert(pxp->bf_refcount <= 0);
				status = px_pgout(nciop,
					pxp->bf_offset + (off_t)pxp->blksz,
					pxp->bf_cnt - pxp->blksz,
					middle,
					&pxp->pos);
				if(status != NC_NOERR)
					return status;
			}
			pxp->bf_cnt = pxp->blksz;
			pxp->bf_extent = pxp->blksz;
		}
		if(pxp->bf_cnt > 0)
		{
			/* copy lower half into upper half */
			(void) memcpy(middle, pxp->bf_base, pxp->blksz);
			upper_cnt = pxp->bf_cnt;
		}
		/* read page below into lower half */
		status = px_pgin(nciop,
			 blkoffset,
			 pxp->blksz,
			 pxp->bf_base,
			 &pxp->bf_cnt,
			 &pxp->pos);
		if(status != NC_NOERR)
			return status;
		pxp->bf_offset = blkoffset;
		if(upper_cnt != 0)
		{
			pxp->bf_extent = 2 * pxp->blksz;
			pxp->bf_cnt = pxp->blksz + upper_cnt;
		}
		else
		{
			pxp->bf_extent = pxp->blksz;
		}
		goto done;
	}
	/* else */
	/* no overlap */
	if(fIsSet(pxp->bf_rflags, RGN_MODIFIED))
	{
		assert(pxp->bf_refcount <= 0);
		status = px_pgout(nciop,
			pxp->bf_offset,
			pxp->bf_cnt,
			pxp->bf_base,
			&pxp->pos);
		if(status != NC_NOERR)
			return status;
		pxp->bf_rflags = 0;
	}
pgin:
	status = px_pgin(nciop,
		 blkoffset,
		 blkextent,
		 pxp->bf_base,
		 &pxp->bf_cnt,
		 &pxp->pos);
	if(status != NC_NOERR)
		return status;
	 pxp->bf_offset = blkoffset;
	 pxp->bf_extent = blkextent;
done:
	extent += diff;
	if(pxp->bf_cnt < extent)
		pxp->bf_cnt = extent;
	assert(pxp->bf_cnt <= pxp->bf_extent);
	pxp->bf_rflags |= rflags;
	pxp->bf_refcount++;
    *vpp = (void *)((signed char*)pxp->bf_base + diff);
	return NC_NOERR;
}
/* Request that the region (offset, extent) be made available through
   *vpp.
   This function converts a file region specified by an offset and
   extent to a memory pointer. The region may be locked until the
   corresponding call to rel().
   For POSIX systems, without NC_SHARE. This function gets a page of
   size extent?
   This is a wrapper for the function px_get, which does all the heavy
   lifting.
   nciop - pointer to ncio struct for this file.
   offset - offset (from beginning of file?) to the data we want to
   read.
   extent - the number of bytes to read from the file.
   rflags - One of the RGN_* flags defined in ncio.h.
   vpp - handle to point at data when it's been read.
*/
static int
ncio_px_get(ncio *const nciop,
		off_t offset, size_t extent,
		int rflags,
		void **const vpp)
{
	ncio_px *const pxp = (ncio_px *)nciop->pvt;
	if(fIsSet(rflags, RGN_WRITE) && !fIsSet(nciop->ioflags, NC_WRITE))
		return EPERM; /* attempt to write readonly file */
	/* reclaim space used in move */
	if(pxp->slave != NULL)
	{
		if(pxp->slave->bf_base != NULL)
		{
			free(pxp->slave->bf_base);
			pxp->slave->bf_base = NULL;
			pxp->slave->bf_extent = 0;
			pxp->slave->bf_offset = OFF_NONE;
		}
		free(pxp->slave);
		pxp->slave = NULL;
	}
	return px_get(nciop, pxp, offset, extent, rflags, vpp);
}
/* ARGSUSED */
static int
px_double_buffer(ncio *const nciop, off_t to, off_t from,
			size_t nbytes, int rflags)
{
	ncio_px *const pxp = (ncio_px *)nciop->pvt;
	int status = NC_NOERR;
	void *src;
	void *dest;
	NC_UNUSED(rflags);
#if INSTRUMENT
fprintf(stderr, "\tdouble_buffr %ld %ld %ld\n",
		 (long)to, (long)from, (long)nbytes);
#endif
	status = px_get(nciop, pxp, to, nbytes, RGN_WRITE,
			&dest);
	if(status != NC_NOERR)
		return status;
	if(pxp->slave == NULL)
	{
		pxp->slave = (ncio_px *) malloc(sizeof(ncio_px));
		if(pxp->slave == NULL)
			return ENOMEM;
		pxp->slave->blksz = pxp->blksz;
		/* pos done below */
		pxp->slave->bf_offset = pxp->bf_offset;
		pxp->slave->bf_extent = pxp->bf_extent;
		pxp->slave->bf_cnt = pxp->bf_cnt;
		pxp->slave->bf_base = malloc(2 * pxp->blksz);
		if(pxp->slave->bf_base == NULL)
			return ENOMEM;
		(void) memcpy(pxp->slave->bf_base, pxp->bf_base,
			 pxp->bf_extent);
		pxp->slave->bf_rflags = 0;
		pxp->slave->bf_refcount = 0;
		pxp->slave->slave = NULL;
	}
	pxp->slave->pos = pxp->pos;
	status = px_get(nciop, pxp->slave, from, nbytes, 0,
			&src);
	if(status != NC_NOERR)
		return status;
	if(pxp->pos != pxp->slave->pos)
	{
		/* position changed, sync */
		pxp->pos = pxp->slave->pos;
	}
	(void) memcpy(dest, src, nbytes);
	(void)px_rel(pxp->slave, from, 0);
	(void)px_rel(pxp, to, RGN_MODIFIED);
	return status;
}
/* Like memmove(), safely move possibly overlapping data.
   Copy one region to another without making anything available to
   higher layers. May be just implemented in terms of get() and rel(),
   or may be tricky to be efficient. Only used in by nc_enddef()
   after redefinition.
   nciop - pointer to ncio struct with file info.
   to - src for move?
   from - dest for move?
   nbytes - number of bytes to move.
   rflags - One of the RGN_* flags defined in ncio.h. The only
   reasonable flag value is RGN_NOLOCK.
*/
static int
ncio_px_move(ncio *const nciop, off_t to, off_t from,
			size_t nbytes, int rflags)
{
	ncio_px *const pxp = (ncio_px *)nciop->pvt;
	int status = NC_NOERR;
	off_t lower;
	off_t upper;
	char *base;
	size_t diff;
	size_t extent;
	if(to == from)
		return NC_NOERR; /* NOOP */
	if(fIsSet(rflags, RGN_WRITE) && !fIsSet(nciop->ioflags, NC_WRITE))
		return EPERM; /* attempt to write readonly file */
	rflags &= RGN_NOLOCK; /* filter unwanted flags */
	if(to > from)
	{
		/* growing */
		lower = from;
		upper = to;
	}
	else
	{
		/* shrinking */
		lower = to;
		upper = from;
	}
	diff = (size_t)(upper - lower);
	extent = diff + nbytes;
#if INSTRUMENT
fprintf(stderr, "ncio_px_move %ld %ld %ld %ld %ld\n",
		 (long)to, (long)from, (long)nbytes, (long)lower, (long)extent);
#endif
	if(extent > pxp->blksz)
	{
		size_t remaining = nbytes;
if(to > from)
{
		off_t frm = from + nbytes;
		off_t toh = to + nbytes;
		for(;;)
		{
			size_t loopextent = MIN(remaining, pxp->blksz);
			frm -= loopextent;
			toh -= loopextent;
			status = px_double_buffer(nciop, toh, frm,
				 	loopextent, rflags) ;
			if(status != NC_NOERR)
				return status;
			remaining -= loopextent;
			if(remaining == 0)
				break; /* normal loop exit */
		}
}
else
{
		for(;;)
		{
			size_t loopextent = MIN(remaining, pxp->blksz);
			status = px_double_buffer(nciop, to, from,
				 	loopextent, rflags) ;
			if(status != NC_NOERR)
				return status;
			remaining -= loopextent;
			if(remaining == 0)
				break; /* normal loop exit */
			to += loopextent;
			from += loopextent;
		}
}
		return NC_NOERR;
	}
#if INSTRUMENT
fprintf(stderr, "\tncio_px_move small\n");
#endif
	status = px_get(nciop, pxp, lower, extent, RGN_WRITE|rflags,
			(void **)&base);
	if(status != NC_NOERR)
		return status;
	if(to > from)
		(void) memmove(base + diff, base, nbytes);
	else
		(void) memmove(base, base + diff, nbytes);
	(void) px_rel(pxp, lower, RGN_MODIFIED);
	return status;
}
/* Flush any buffers to disk. May be a no-op on if I/O is unbuffered.
   This function is used when NC_SHARE is NOT used.
*/
static int
ncio_px_sync(ncio *const nciop)
{
	ncio_px *const pxp = (ncio_px *)nciop->pvt;
	int status = NC_NOERR;
	if(fIsSet(pxp->bf_rflags, RGN_MODIFIED))
	{
		assert(pxp->bf_refcount <= 0);
		status = px_pgout(nciop, pxp->bf_offset,
			pxp->bf_cnt,
			pxp->bf_base, &pxp->pos);
		if(status != NC_NOERR)
			return status;
		pxp->bf_rflags = 0;
	}
	else if (!fIsSet(pxp->bf_rflags, RGN_WRITE))
	{
	    /*
	     * The dataset is readonly.  Invalidate the buffers so
	     * that the next ncio_px_get() will actually read data.
	     */
	    pxp->bf_offset = OFF_NONE;
	    pxp->bf_cnt = 0;
	}
	return status;
}
/* Internal function called at close to
   free up anything hanging off pvt.
*/
static void
ncio_px_freepvt(void *const pvt)
{
	ncio_px *const pxp = (ncio_px *)pvt;
	if(pxp == NULL)
		return;
	if(pxp->slave != NULL)
	{
		if(pxp->slave->bf_base != NULL)
		{
			free(pxp->slave->bf_base);
			pxp->slave->bf_base = NULL;
			pxp->slave->bf_extent = 0;
			pxp->slave->bf_offset = OFF_NONE;
		}
		free(pxp->slave);
		pxp->slave = NULL;
	}
	if(pxp->bf_base != NULL)
	{
		free(pxp->bf_base);
		pxp->bf_base = NULL;
		pxp->bf_extent = 0;
		pxp->bf_offset = OFF_NONE;
	}
}
/* This is the second half of the ncio initialization. This is called
   after the file has actually been opened.
   The most important thing that happens is the allocation of a block
   of memory at pxp->bf_base. This is going to be twice the size of
   the chunksizehint (rounded up to the nearest sizeof(double)) passed
   in from nc__create or nc__open. The rounded chunksizehint (passed
   in here in sizehintp) is going to be stored as pxp->blksize.
   According to our "contract" we are not allowed to ask for an extent
   larger than this chunksize/sizehint/blksize from the ncio get
   function.
   nciop - pointer to the ncio struct
   sizehintp - pointer to a size hint that will be rounded up and
   passed back to the caller.
   isNew - true if this is being called from ncio_create for a new
   file.
*/
static int
ncio_px_init2(ncio *const nciop, size_t *sizehintp, int isNew)
{
	ncio_px *const pxp = (ncio_px *)nciop->pvt;
	const size_t bufsz = 2 * *sizehintp;
	assert(nciop->fd >= 0);
	pxp->blksz = *sizehintp;
	assert(pxp->bf_base == NULL);
	/* this is separate allocation because it may grow */
	pxp->bf_base = malloc(bufsz);
	if(pxp->bf_base == NULL)
		return ENOMEM;
	/* else */
	pxp->bf_cnt = 0;
	if(isNew)
	{
		/* save a read */
		pxp->pos = 0;
		pxp->bf_offset = 0;
		pxp->bf_extent = bufsz;
		(void) memset(pxp->bf_base, 0, pxp->bf_extent);
	}
	return NC_NOERR;
}
/* This is the first of a two-part initialization of the ncio struct.
   Here the rel, get, move, sync, and free function pointers are set
   to their POSIX non-NC_SHARE functions (ncio_px_*).
   The ncio_px struct is also partially initialized.
*/
static void
ncio_px_init(ncio *const nciop)
{
	ncio_px *const pxp = (ncio_px *)nciop->pvt;
	*((ncio_relfunc **)&nciop->rel) = ncio_px_rel; /* cast away const */
	*((ncio_getfunc **)&nciop->get) = ncio_px_get; /* cast away const */
	*((ncio_movefunc **)&nciop->move) = ncio_px_move; /* cast away const */
	*((ncio_syncfunc **)&nciop->sync) = ncio_px_sync; /* cast away const */
	*((ncio_filesizefunc **)&nciop->filesize) = ncio_px_filesize; /* cast away const */
	*((ncio_pad_lengthfunc **)&nciop->pad_length) = ncio_px_pad_length; /* cast away const */
	*((ncio_closefunc **)&nciop->close) = ncio_px_close; /* cast away const */
	pxp->blksz = 0;
	pxp->pos = -1;
	pxp->bf_offset = OFF_NONE;
	pxp->bf_extent = 0;
	pxp->bf_rflags = 0;
	pxp->bf_refcount = 0;
	pxp->bf_base = NULL;
	pxp->slave = NULL;
}
/* Begin spx */
/* This is the struct that gets hung of ncio->pvt(?) when the NC_SHARE
   flag is used.
*/
typedef struct ncio_spx {
	off_t pos;
	/* buffer */
	off_t	bf_offset;
	size_t	bf_extent;
	size_t	bf_cnt;
	void	*bf_base;
} ncio_spx;
/*ARGSUSED*/
/* This function releases the region specified by offset.
   For POSIX system, with NC_SHARE, this becomes the rel function
   pointed to by the ncio rel function pointer. It merely checks for
   file write permission, then calls px_rel to do everything.
   nciop - pointer to ncio struct.
   offset - beginning of region.
   rflags - One of the RGN_* flags defined in ncio.h. If set to
   RGN_MODIFIED it means that the data in this region were modified,
   and it needs to be written out to the disk immediately (since we
   are not buffering with NC_SHARE on).
*/
static int
ncio_spx_rel(ncio *const nciop, off_t offset, int rflags)
{
	ncio_spx *const pxp = (ncio_spx *)nciop->pvt;
	int status = NC_NOERR;
	assert(pxp->bf_offset <= offset);
	assert(pxp->bf_cnt != 0);
	assert(pxp->bf_cnt <= pxp->bf_extent);
#ifdef X_ALIGN
	assert(offset < pxp->bf_offset + X_ALIGN);
	assert(pxp->bf_cnt % X_ALIGN == 0 );
#endif
	NC_UNUSED(offset);
	if(fIsSet(rflags, RGN_MODIFIED))
	{
		if(!fIsSet(nciop->ioflags, NC_WRITE))
			return EPERM; /* attempt to write readonly file */
		status = px_pgout(nciop, pxp->bf_offset,
			pxp->bf_cnt,
			pxp->bf_base, &pxp->pos);
		/* if error, invalidate buffer anyway */
	}
	pxp->bf_offset = OFF_NONE;
	pxp->bf_cnt = 0;
	return status;
}
/* Request that the region (offset, extent) be made available through
   *vpp.
   This function converts a file region specified by an offset and
   extent to a memory pointer. The region may be locked until the
   corresponding call to rel().
   For POSIX systems, with NC_SHARE.
   nciop - pointer to ncio struct for this file.
   offset - offset (from beginning of file?) to the data we want to
   read.
   extent - the number of bytes we want.
   rflags - One of the RGN_* flags defined in ncio.h. May be RGN_NOLOCK.
   vpp - handle to point at data when it's been read.
*/
static int
ncio_spx_get(ncio *const nciop,
		off_t offset, size_t extent,
		int rflags,
		void **const vpp)
{
	ncio_spx *const pxp = (ncio_spx *)nciop->pvt;
	int status = NC_NOERR;
#ifdef X_ALIGN
	size_t rem;
#endif
	if(fIsSet(rflags, RGN_WRITE) && !fIsSet(nciop->ioflags, NC_WRITE))
		return EPERM; /* attempt to write readonly file */
	assert(extent != 0);
	assert(extent < X_INT_MAX); /* sanity check */
	assert(pxp->bf_cnt == 0);
#ifdef X_ALIGN
	rem = (size_t)(offset % X_ALIGN);
	if(rem != 0)
	{
		offset -= rem;
		extent += rem;
	}
	{
      const size_t rndup = extent % X_ALIGN;
      if(rndup != 0)
        extent += X_ALIGN - rndup;
	}
	assert(offset % X_ALIGN == 0);
	assert(extent % X_ALIGN == 0);
#endif
	if(pxp->bf_extent < extent)
	{
		if(pxp->bf_base != NULL)
		{
			free(pxp->bf_base);
			pxp->bf_base = NULL;
			pxp->bf_extent = 0;
		}
		assert(pxp->bf_extent == 0);
		pxp->bf_base = malloc(extent+1);
		if(pxp->bf_base == NULL)
			return ENOMEM;
		pxp->bf_extent = extent;
	}
	status = px_pgin(nciop, offset,
		 extent,
		 pxp->bf_base,
		 &pxp->bf_cnt, &pxp->pos);
	if(status != NC_NOERR)
		return status;
	pxp->bf_offset = offset;
	if(pxp->bf_cnt < extent)
		pxp->bf_cnt = extent;
#ifdef X_ALIGN
	*vpp = (char *)pxp->bf_base + rem;
#else
	*vpp = pxp->bf_base;
#endif
	return NC_NOERR;
}
#if 0
/*ARGSUSED*/
static int
strategy(ncio *const nciop, off_t to, off_t offset,
			size_t extent, int rflags)
{
	static ncio_spx pxp[1];
	int status = NC_NOERR;
#ifdef X_ALIGN
	size_t rem;
#endif
	assert(extent != 0);
	assert(extent < X_INT_MAX); /* sanity check */
#if INSTRUMENT
fprintf(stderr, "strategy %ld at %ld to %ld\n",
	 (long)extent, (long)offset, (long)to);
#endif
#ifdef X_ALIGN
	rem = (size_t)(offset % X_ALIGN);
	if(rem != 0)
	{
		offset -= rem;
		extent += rem;
	}
	{
		const size_t rndup = extent % X_ALIGN;
		if(rndup != 0)
			extent += X_ALIGN - rndup;
	}
	assert(offset % X_ALIGN == 0);
	assert(extent % X_ALIGN == 0);
#endif
	if(pxp->bf_extent < extent)
	{
		if(pxp->bf_base != NULL)
		{
			free(pxp->bf_base);
			pxp->bf_base = NULL;
			pxp->bf_extent = 0;
		}
		assert(pxp->bf_extent == 0);
		pxp->bf_base = malloc(extent);
		if(pxp->bf_base == NULL)
			return ENOMEM;
		pxp->bf_extent = extent;
	}
	status = px_pgin(nciop, offset,
		 extent,
		 pxp->bf_base,
		 &pxp->bf_cnt, &pxp->pos);
	if(status != NC_NOERR)
		return status;
	pxp->bf_offset = to; /* TODO: XALIGN */
	if(pxp->bf_cnt < extent)
		pxp->bf_cnt = extent;
	status = px_pgout(nciop, pxp->bf_offset,
		pxp->bf_cnt,
		pxp->bf_base, &pxp->pos);
	/* if error, invalidate buffer anyway */
	pxp->bf_offset = OFF_NONE;
	pxp->bf_cnt = 0;
	return status;
}
#endif
/* Copy one region to another without making anything available to
   higher layers. May be just implemented in terms of get() and rel(),
   or may be tricky to be efficient.  Only used in by nc_enddef()
   after redefinition.
   nciop - pointer to ncio struct for this file.
   to - dest for move?
   from - src for move?
   nbytes - number of bytes to move.
   rflags - One of the RGN_* flags defined in ncio.h.
*/
static int
ncio_spx_move(ncio *const nciop, off_t to, off_t from,
			size_t nbytes, int rflags)
{
	int status = NC_NOERR;
	off_t lower = from;
	off_t upper = to;
	char *base;
	size_t diff;
	size_t extent;
	rflags &= RGN_NOLOCK; /* filter unwanted flags */
	if(to == from)
		return NC_NOERR; /* NOOP */
	if(to > from)
	{
		/* growing */
		lower = from;
		upper = to;
	}
	else
	{
		/* shrinking */
		lower = to;
		upper = from;
	}
	diff = (size_t)(upper - lower);
	extent = diff + nbytes;
	status = ncio_spx_get(nciop, lower, extent, RGN_WRITE|rflags,
			(void **)&base);
	if(status != NC_NOERR)
		return status;
	if(to > from)
		(void) memmove(base + diff, base, nbytes);
	else
		(void) memmove(base, base + diff, nbytes);
	(void) ncio_spx_rel(nciop, lower, RGN_MODIFIED);
	return status;
}
/*ARGSUSED*/
/* Flush any buffers to disk. May be a no-op on if I/O is unbuffered.
*/
static int
ncio_spx_sync(ncio *const nciop)
{
	NC_UNUSED(nciop);
	/* NOOP */
	return NC_NOERR;
}
static void
ncio_spx_freepvt(void *const pvt)
{
	ncio_spx *const pxp = (ncio_spx *)pvt;
	if(pxp == NULL)
		return;
	if(pxp->bf_base != NULL)
	{
		free(pxp->bf_base);
		pxp->bf_base = NULL;
		pxp->bf_offset = OFF_NONE;
		pxp->bf_extent = 0;
		pxp->bf_cnt = 0;
	}
}
/* This does the second half of the ncio_spx struct initialization for
   POSIX systems, with NC_SHARE on.
   nciop - pointer to ncio struct for this file. File has been opened.
   sizehintp - pointer to a size which will be rounded up to the
   nearest 8-byt boundary and then used as the max size "chunk" (or
   page) to read from the file.
*/
static int
ncio_spx_init2(ncio *const nciop, const size_t *const sizehintp)
{
	ncio_spx *const pxp = (ncio_spx *)nciop->pvt;
	assert(nciop->fd >= 0);
	pxp->bf_extent = *sizehintp;
	assert(pxp->bf_base == NULL);
	/* this is separate allocation because it may grow */
	pxp->bf_base = malloc(pxp->bf_extent);
	if(pxp->bf_base == NULL)
	{
		pxp->bf_extent = 0;
		return ENOMEM;
	}
	/* else */
	return NC_NOERR;
}
/* First half of init for ncio_spx struct, setting the rel, get, move,
   sync, and free function pointers to the NC_SHARE versions of these
   functions (i.e. the ncio_spx_* functions).
*/
static void
ncio_spx_init(ncio *const nciop)
{
	ncio_spx *const pxp = (ncio_spx *)nciop->pvt;
	*((ncio_relfunc **)&nciop->rel) = ncio_spx_rel; /* cast away const */
	*((ncio_getfunc **)&nciop->get) = ncio_spx_get; /* cast away const */
	*((ncio_movefunc **)&nciop->move) = ncio_spx_move; /* cast away const */
	*((ncio_syncfunc **)&nciop->sync) = ncio_spx_sync; /* cast away const */
	/* shared with _px_ */
	*((ncio_filesizefunc **)&nciop->filesize) = ncio_px_filesize; /* cast away const */
	*((ncio_pad_lengthfunc **)&nciop->pad_length) = ncio_px_pad_length; /* cast away const */
	*((ncio_closefunc **)&nciop->close) = ncio_spx_close; /* cast away const */
	pxp->pos = -1;
	pxp->bf_offset = OFF_NONE;
	pxp->bf_extent = 0;
	pxp->bf_cnt = 0;
	pxp->bf_base = NULL;
}
/* */
/* This will call whatever free function is attached to the free
   function pointer in ncio. It's called from ncio_close, and from
   ncio_open and ncio_create when an error occurs that the file
   metadata must be freed.
*/
static void
ncio_px_free(ncio *nciop)
{
	if(nciop == NULL)
		return;
	if(nciop->pvt != NULL)
		ncio_px_freepvt(nciop->pvt);
	free(nciop);
}
static void
ncio_spx_free(ncio *nciop)
{
	if(nciop == NULL)
		return;
	if(nciop->pvt != NULL)
		ncio_spx_freepvt(nciop->pvt);
	free(nciop);
}
/* Create a new ncio struct to hold info about the file. This will
   create and init the ncio_px or ncio_spx struct (the latter if
   NC_SHARE is used.)
*/
static ncio *
ncio_px_new(const char *path, int ioflags)
{
	size_t sz_ncio = M_RNDUP(sizeof(ncio));
	size_t sz_path = M_RNDUP(strlen(path) +1);
	size_t sz_ncio_pvt;
	ncio *nciop;
#if ALWAYS_NC_SHARE /* DEBUG */
	fSet(ioflags, NC_SHARE);
#endif
	if(fIsSet(ioflags, NC_SHARE))
		sz_ncio_pvt = sizeof(ncio_spx);
	else
		sz_ncio_pvt = sizeof(ncio_px);
	nciop = (ncio *) malloc(sz_ncio + sz_path + sz_ncio_pvt);
	if(nciop == NULL)
		return NULL;
	nciop->ioflags = ioflags;
	*((int *)&nciop->fd) = -1; /* cast away const */
	nciop->path = (char *) ((char *)nciop + sz_ncio);
	(void) strcpy((char *)nciop->path, path); /* cast away const */
				/* cast away const */
	*((void **)&nciop->pvt) = (void *)(nciop->path + sz_path);
	if(fIsSet(ioflags, NC_SHARE))
		ncio_spx_init(nciop);
	else
		ncio_px_init(nciop);
	return nciop;
}
/* Public below this point */
#ifndef NCIO_MINBLOCKSIZE
#define NCIO_MINBLOCKSIZE 256
#endif
#ifndef NCIO_MAXBLOCKSIZE
#define NCIO_MAXBLOCKSIZE 268435456 /* sanity check, about X_SIZE_T_MAX/8 */
#endif
#ifdef S_IRUSR
#define NC_DEFAULT_CREAT_MODE \
        (S_IRUSR|S_IWUSR|S_IRGRP|S_IWGRP|S_IROTH|S_IWOTH) /* 0666 */
#else
#define NC_DEFAULT_CREAT_MODE 0666
#endif
/* Create a file, and the ncio struct to go with it. This function is
   only called from nc__create_mp.
   path - path of file to create.
   ioflags - flags from nc_create
   initialsz - From the netcdf man page: "The argument
   Iinitialsize sets the initial size of the file at creation time."
   igeto -
   igetsz -
   sizehintp - this eventually goes into pxp->blksz and is the size of
   a page of data for buffered reads and writes.
   nciopp - pointer to a pointer that will get location of newly
   created and inited ncio struct.
   igetvpp - pointer to pointer which will get the location of ?
*/
int
posixio_create(const char *path, int ioflags,
	size_t initialsz,
	off_t igeto, size_t igetsz, size_t *sizehintp,
	void* parameters,
	ncio **nciopp, void **const igetvpp)
{
	ncio *nciop;
	int oflags = (O_RDWR|O_CREAT);
	int fd;
	int status;
	NC_UNUSED(parameters);
	if(initialsz < (size_t)igeto + igetsz)
		initialsz = (size_t)igeto + igetsz;
	fSet(ioflags, NC_WRITE);
	if(path == NULL || *path == 0)
		return EINVAL;
	nciop = ncio_px_new(path, ioflags);
	if(nciop == NULL)
		return ENOMEM;
	if(fIsSet(ioflags, NC_NOCLOBBER))
		fSet(oflags, O_EXCL);
	else
		fSet(oflags, O_TRUNC);
#ifdef O_BINARY
	fSet(oflags, O_BINARY);
#endif
#ifdef vms
	fd = NCopen3(path, oflags, NC_DEFAULT_CREAT_MODE, "ctx=stm");
#else
	/* Should we mess with the mode based on NC_SHARE ?? */
	fd = NCopen3(path, oflags, NC_DEFAULT_CREAT_MODE);
#endif
#if 0
	(void) fprintf(stderr, "ncio_create(): path=\"%s\"\n", path);
	(void) fprintf(stderr, "ncio_create(): oflags=0x%x\n", oflags);
#endif
	if(fd < 0)
	{
		status = errno;
		goto unwind_new;
	}
	*((int *)&nciop->fd) = fd; /* cast away const */
	if(*sizehintp < NCIO_MINBLOCKSIZE)
	{
		/* Use default */
		*sizehintp = blksize(fd);
	}
	else if(*sizehintp >= NCIO_MAXBLOCKSIZE)
	{
		/* Use maximum allowed value */
		*sizehintp = NCIO_MAXBLOCKSIZE;
	}
	else
	{
		*sizehintp = M_RNDUP(*sizehintp);
	}
	if(fIsSet(nciop->ioflags, NC_SHARE))
		status = ncio_spx_init2(nciop, sizehintp);
	else
		status = ncio_px_init2(nciop, sizehintp, 1);
	if(status != NC_NOERR)
		goto unwind_open;
	if(initialsz != 0)
	{
		status = fgrow(fd, (off_t)initialsz);
		if(status != NC_NOERR)
			goto unwind_open;
	}
	if(igetsz != 0)
	{
		status = nciop->get(nciop,
				igeto, igetsz,
                        	RGN_WRITE,
                        	igetvpp);
		if(status != NC_NOERR)
			goto unwind_open;
	}
	*nciopp = nciop;
	return NC_NOERR;
unwind_open:
	(void) close(fd);
	/* ?? unlink */
	/*FALLTHRU*/
unwind_new:
	ncio_close(nciop,!fIsSet(ioflags, NC_NOCLOBBER));
	return status;
}
/* This function opens the data file. It is only called from nc.c,
   from nc__open_mp and nc_delete_mp.
   path - path of data file.
   ioflags - flags passed into nc_open.
   igeto - looks like this function can do an initial page get, and
   igeto is going to be the offset for that. But it appears to be
   unused
   igetsz - the size in bytes of initial page get (a.k.a. extent). Not
   ever used in the library.
   sizehintp - pointer to sizehint parameter from nc__open or
   nc__create. This is used to set pxp->blksz.
   Here's what the man page has to say:
   "The argument referenced by chunksize controls a space versus time
   tradeoff, memory allocated in the netcdf library versus number of
   system calls.
   Because of internal requirements, the value may not be set to
   exactly the value requested. The actual value chosen is returned by reference.
   Using the value NC_SIZEHINT_DEFAULT causes the library to choose a
   default. How the system choses the default depends on the
   system. On many systems, the "preferred I/O block size" is
   available from the stat() system call, struct stat member
   st_blksize. If this is available it is used. Lacking that, twice
   the system pagesize is used. Lacking a call to discover the system
   pagesize, we just set default chunksize to 8192.
   The chunksize is a property of a given open netcdf descriptor ncid,
   it is not a persistent property of the netcdf dataset."
   nciopp - pointer to pointer that will get address of newly created
   and inited ncio struct.
   igetvpp - handle to pass back pointer to data from initial page
   read, if this were ever used, which it isn't.
*/
int
posixio_open(const char *path,
	int ioflags,
	off_t igeto, size_t igetsz, size_t *sizehintp,
        void* parameters,
	ncio **nciopp, void **const igetvpp)
{
	ncio *nciop;
	int oflags = fIsSet(ioflags, NC_WRITE) ? O_RDWR : O_RDONLY;
	int fd = -1;
	int status = 0;
	NC_UNUSED(parameters);
	if(path == NULL || *path == 0)
		return EINVAL;
	nciop = ncio_px_new(path, ioflags);
	if(nciop == NULL)
		return ENOMEM;
#ifdef O_BINARY
	/*#if _MSC_VER*/
	fSet(oflags, O_BINARY);
#endif
#ifdef vms
	fd = NCopen3(path, oflags, 0, "ctx=stm");
#else
	fd = NCopen3(path, oflags, 0);
#endif
	if(fd < 0)
	{
		status = errno;
		goto unwind_new;
	}
	*((int *)&nciop->fd) = fd; /* cast away const */
	if(*sizehintp < NCIO_MINBLOCKSIZE)
	{
		/* Use default */
		*sizehintp = blksize(fd);
	}
	else if(*sizehintp >= NCIO_MAXBLOCKSIZE)
	{
		/* Use maximum allowed value */
		*sizehintp = NCIO_MAXBLOCKSIZE;
	}
	else
	{
		*sizehintp = M_RNDUP(*sizehintp);
	}
	if(fIsSet(nciop->ioflags, NC_SHARE))
		status = ncio_spx_init2(nciop, sizehintp);
	else
		status = ncio_px_init2(nciop, sizehintp, 0);
	if(status != NC_NOERR)
		goto unwind_open;
	if(igetsz != 0)
	{
		status = nciop->get(nciop,
				igeto, igetsz,
                        	0,
                        	igetvpp);
		if(status != NC_NOERR)
			goto unwind_open;
	}
	*nciopp = nciop;
	return NC_NOERR;
unwind_open:
	(void) close(fd); /* assert fd >= 0 */
	/*FALLTHRU*/
unwind_new:
	ncio_close(nciop,0);
	return status;
}
/*
 * Get file size in bytes.
 */
static int
ncio_px_filesize(ncio *nciop, off_t *filesizep)
{
	/* There is a problem with fstat on Windows based systems
		which manifests (so far) when Config RELEASE is built.
		Use _filelengthi64 isntead. */
#ifdef HAVE_FILE_LENGTH_I64
	__int64 file_len = 0;
	if( (file_len = _filelengthi64(nciop->fd)) < 0) {
		return errno;
	}
	*filesizep = file_len;
#else
    struct stat sb;
    assert(nciop != NULL);
    if (fstat(nciop->fd, &sb) < 0)
	return errno;
    *filesizep = sb.st_size;
#endif
	return NC_NOERR;
}
/*
 * Sync any changes to disk, then truncate or extend file so its size
 * is length.  This is only intended to be called before close, if the
 * file is open for writing and the actual size does not match the
 * calculated size, perhaps as the result of having been previously
 * written in NOFILL mode.
 */
static int
ncio_px_pad_length(ncio *nciop, off_t length)
{
	int status = NC_NOERR;
	if(nciop == NULL)
		return EINVAL;
	if(!fIsSet(nciop->ioflags, NC_WRITE))
	        return EPERM; /* attempt to write readonly file */
	status = nciop->sync(nciop);
	if(status != NC_NOERR)
	        return status;
 	status = fgrow2(nciop->fd, length);
 	if(status != NC_NOERR)
	        return status;
	return NC_NOERR;
}
/* Write out any dirty buffers to disk and
   ensure that next read will get data from disk.
   Sync any changes, then close the open file associated with the ncio
   struct, and free its memory.
   nciop - pointer to ncio to close.
   doUnlink - if true, unlink file
*/
static int
ncio_px_close(ncio *nciop, int doUnlink)
{
	int status = NC_NOERR;
	if(nciop == NULL)
		return EINVAL;
	if(nciop->fd > 0) {
	    status = nciop->sync(nciop);
	    (void) close(nciop->fd);
	}
	if(doUnlink)
		(void) unlink(nciop->path);
	ncio_px_free(nciop);
	return status;
}
static int
ncio_spx_close(ncio *nciop, int doUnlink)
{
	int status = NC_NOERR;
	if(nciop == NULL)
		return EINVAL;
	if(nciop->fd > 0) {
	    status = nciop->sync(nciop);
	    (void) close(nciop->fd);
	}
	if(doUnlink)
		(void) unlink(nciop->path);
	ncio_spx_free(nciop);
	return status;
}
 |