1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#include <stdlib.h>
#include <string.h>
#include <math.h>
#include "netcdf_filter_build.h"
#ifdef HAVE_SZ
#include <szlib.h>
#include "H5Zszip.h"
/* Local function prototypes */
static htri_t H5Z___can_apply_szip(hid_t dcpl_id, hid_t type_id, hid_t space_id);
static herr_t H5Z___set_local_szip(hid_t dcpl_id, hid_t type_id, hid_t space_id);
static size_t H5Z___filter_szip(unsigned flags, size_t cd_nelmts,
const unsigned cd_values[], size_t nbytes, size_t *buf_size, void **buf);
/* This message derives from H5Z */
H5Z_class2_t H5Z_SZIP[1] = {{
H5Z_CLASS_T_VERS, /* H5Z_class_t version */
H5Z_FILTER_SZIP, /* Filter id number */
1, /* Assume encoder present: check before registering */
1, /* decoder_present flag (set to true) */
"szip", /* Filter name for debugging */
H5Z___can_apply_szip, /* The "can apply" callback */
H5Z___set_local_szip, /* The "set local" callback */
H5Z___filter_szip, /* The actual filter function */
}};
/*-------------------------------------------------------------------------
* Function: H5Z___can_apply_szip
*
* Purpose: Check the parameters for szip compression for validity and
* whether they fit a particular dataset.
*
* Note: This function currently range-checks for datatypes with
* 8-bit boundaries (8, 16, 24, etc.). It appears that the szip
* library can actually handle 1-24, 32 & 64 bit samples. If
* this becomes important, we should make the checks below more
* sophisticated and have them check for n-bit datatypes of the
* correct size, etc. - QAK
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* Monday, April 7, 2003
*
*-------------------------------------------------------------------------
*/
static htri_t
H5Z___can_apply_szip(hid_t H5_ATTR_UNUSED dcpl_id, hid_t type_id, hid_t H5_ATTR_UNUSED space_id)
{
htri_t ret_value = TRUE; /* Return value */
#ifdef USE_HDF5
unsigned dtype_size; /* Datatype's size (in bits) */
H5T_order_t dtype_order; /* Datatype's endianness order */
FUNC_ENTER_STATIC
/* Get datatype's size, for checking the "bits-per-pixel" */
if((dtype_size = (8 * H5Tget_size(type_id))) == 0)
HGOTO_ERROR(H5E_PLINE, H5E_BADTYPE, FAIL, "bad datatype size")
/* Range check datatype's size */
if(dtype_size > 32 && dtype_size != 64)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FALSE, "invalid datatype size")
/* Get datatype's endianness order */
if((dtype_order = H5Tget_order(type_id)) == H5T_ORDER_ERROR)
HGOTO_ERROR(H5E_PLINE, H5E_BADTYPE, FAIL, "can't retrieve datatype endianness order")
/* Range check datatype's endianness order */
/* (Note: this may not handle non-atomic datatypes well) */
if(dtype_order != H5T_ORDER_LE && dtype_order != H5T_ORDER_BE)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FALSE, "invalid datatype endianness order")
done:
FUNC_LEAVE_NOAPI(ret_value)
#else /*!USE_HDF5*/
return ret_value;
#endif /*USE_HDF5*/
} /* end H5Z___can_apply_szip() */
/*-------------------------------------------------------------------------
* Function: H5Z___set_local_szip
*
* Purpose: Set the "local" dataset parameters for szip compression.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* Monday, April 7, 2003
*
*-------------------------------------------------------------------------
*/
static herr_t
H5Z___set_local_szip(hid_t dcpl_id, hid_t type_id, hid_t space_id)
{
herr_t ret_value = SUCCEED; /* Return value */
#ifdef USE_HDF5
unsigned flags; /* Filter flags */
size_t cd_nelmts = H5Z_SZIP_USER_NPARMS; /* Number of filter parameters */
unsigned cd_values[H5Z_SZIP_TOTAL_NPARMS]; /* Filter parameters */
hsize_t dims[H5S_MAX_RANK+1]; /* Dataspace (i.e. chunk) dimensions */
int ndims; /* Number of (chunk) dimensions */
H5T_order_t dtype_order; /* Datatype's endianness order */
size_t dtype_size; /* Datatype's size (in bits) */
size_t dtype_precision; /* Datatype's precision (in bits) */
size_t dtype_offset; /* Datatype's offset (in bits) */
hsize_t scanline; /* Size of dataspace's fastest changing dimension */
FUNC_ENTER_STATIC
/* Get the filter's current parameters */
if(H5Pget_filter_by_id1(dcpl_id, H5Z_FILTER_SZIP, &flags, &cd_nelmts, cd_values, 0, NULL) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "can't get szip parameters")
/* Get datatype's size, for checking the "bits-per-pixel" */
if((dtype_size = (8 * H5Tget_size(type_id))) == 0)
HGOTO_ERROR(H5E_PLINE, H5E_BADTYPE, FAIL, "bad datatype size");
/* Get datatype's precision, in case is less than full bits */
if((dtype_precision = H5Tget_precision(type_id)) == 0)
HGOTO_ERROR(H5E_PLINE, H5E_BADTYPE, FAIL, "bad datatype precision");
if(dtype_precision < dtype_size) {
dtype_offset = H5Tget_offset(type_id);
if(dtype_offset != 0)
dtype_precision = dtype_size;
} /* end if */
if(dtype_precision > 24) {
if(dtype_precision <= 32)
dtype_precision = 32;
else if(dtype_precision <= 64)
dtype_precision = 64;
} /* end if */
/* Set "local" parameter for this dataset's "bits-per-pixel" */
cd_values[H5Z_SZIP_PARM_BPP] = dtype_precision;
/* Get dimensions for dataspace */
if((ndims = H5Sget_simple_extent_dims(space_id, dims, NULL)) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "unable to get dataspace dimensions")
/* Set "local" parameter for this dataset's "pixels-per-scanline" */
/* (Use the chunk's fastest changing dimension size) */
HDassert(ndims > 0);
scanline = dims[ndims - 1];
/* Adjust scanline if it is smaller than number of pixels per block or
if it is bigger than maximum pixels per scanline, or there are more than
SZ_MAX_BLOCKS_PER_SCANLINE blocks per scanline */
/* Check the pixels per block against the 'scanline' size */
if(scanline < cd_values[H5Z_SZIP_PARM_PPB]) {
hssize_t npoints; /* Number of points in the dataspace */
/* Get number of elements for the dataspace; use
total number of elements in the chunk to define the new 'scanline' size */
if((npoints = H5Sget_simple_extent_npoints(space_id)) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTGET, FAIL, "unable to get number of points in the dataspace")
if(npoints < cd_values[H5Z_SZIP_PARM_PPB])
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "pixels per block greater than total number of elements in the chunk")
scanline = MIN((cd_values[H5Z_SZIP_PARM_PPB] * SZ_MAX_BLOCKS_PER_SCANLINE), npoints);
}
else {
if(scanline <= SZ_MAX_PIXELS_PER_SCANLINE)
scanline = MIN((cd_values[H5Z_SZIP_PARM_PPB] * SZ_MAX_BLOCKS_PER_SCANLINE), scanline);
else
scanline = cd_values[H5Z_SZIP_PARM_PPB] * SZ_MAX_BLOCKS_PER_SCANLINE;
} /* end else */
/* Assign the final value to the scanline */
H5_CHECKED_ASSIGN(cd_values[H5Z_SZIP_PARM_PPS], unsigned, scanline, hsize_t);
/* Get datatype's endianness order */
if((dtype_order = H5Tget_order(type_id)) == H5T_ORDER_ERROR)
HGOTO_ERROR(H5E_PLINE, H5E_BADTYPE, FAIL, "bad datatype endianness order")
/* Set the correct endianness flag for szip */
/* (Note: this may not handle non-atomic datatypes well) */
cd_values[H5Z_SZIP_PARM_MASK] &= ~(H5_SZIP_LSB_OPTION_MASK|H5_SZIP_MSB_OPTION_MASK);
switch(dtype_order) {
case H5T_ORDER_LE: /* Little-endian byte order */
cd_values[H5Z_SZIP_PARM_MASK] |= H5_SZIP_LSB_OPTION_MASK;
break;
case H5T_ORDER_BE: /* Big-endian byte order */
cd_values[H5Z_SZIP_PARM_MASK] |= H5_SZIP_MSB_OPTION_MASK;
break;
case H5T_ORDER_ERROR:
case H5T_ORDER_VAX:
case H5T_ORDER_MIXED:
case H5T_ORDER_NONE:
default:
HGOTO_ERROR(H5E_PLINE, H5E_BADTYPE, FAIL, "bad datatype endianness order")
} /* end switch */
/* Modify the filter's parameters for this dataset */
if(H5Pmodify_filter(dcpl_id, H5Z_FILTER_SZIP, flags, H5Z_SZIP_TOTAL_NPARMS, cd_values) < 0)
HGOTO_ERROR(H5E_PLINE, H5E_CANTSET, FAIL, "can't set local szip parameters")
done:
FUNC_LEAVE_NOAPI(ret_value)
#else /*!USE_HDF5*/
return ret_value;
#endif /*USE_HDF5*/
} /* end H5Z___set_local_szip() */
/*-------------------------------------------------------------------------
* Function: H5Z___filter_szip
*
* Purpose: Implement an I/O filter around the 'rice' algorithm in
* libsz
*
* Return: Success: Size of buffer filtered
* Failure: 0
*
* Programmer: Kent Yang
* Tuesday, April 1, 2003
*
*-------------------------------------------------------------------------
*/
static size_t
H5Z___filter_szip(unsigned flags, size_t cd_nelmts, const unsigned cd_values[],
size_t nbytes, size_t *buf_size, void **buf)
{
size_t ret_value = 0; /* Return value */
size_t size_out = 0; /* Size of output buffer */
unsigned char *outbuf = NULL; /* Pointer to new output buffer */
unsigned char *newbuf = NULL; /* Pointer to input buffer */
SZ_com_t sz_param; /* szip parameter block */
FUNC_ENTER_STATIC
/* Sanity check to make certain that we haven't drifted out of date with
* the mask options from the szlib.h header */
HDassert(H5_SZIP_ALLOW_K13_OPTION_MASK==SZ_ALLOW_K13_OPTION_MASK);
HDassert(H5_SZIP_CHIP_OPTION_MASK==SZ_CHIP_OPTION_MASK);
HDassert(H5_SZIP_EC_OPTION_MASK==SZ_EC_OPTION_MASK);
HDassert(H5_SZIP_LSB_OPTION_MASK==SZ_LSB_OPTION_MASK);
HDassert(H5_SZIP_MSB_OPTION_MASK==SZ_MSB_OPTION_MASK);
HDassert(H5_SZIP_NN_OPTION_MASK==SZ_NN_OPTION_MASK);
HDassert(H5_SZIP_RAW_OPTION_MASK==SZ_RAW_OPTION_MASK);
/* Check arguments */
if (cd_nelmts!=4)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, 0, "invalid number of filter parameters")
/* Copy the filter parameters into the szip parameter block */
H5_CHECKED_ASSIGN(sz_param.options_mask, int, cd_values[H5Z_SZIP_PARM_MASK], unsigned);
H5_CHECKED_ASSIGN(sz_param.bits_per_pixel, int, cd_values[H5Z_SZIP_PARM_BPP], unsigned);
H5_CHECKED_ASSIGN(sz_param.pixels_per_block, int, cd_values[H5Z_SZIP_PARM_PPB], unsigned);
H5_CHECKED_ASSIGN(sz_param.pixels_per_scanline, int, cd_values[H5Z_SZIP_PARM_PPS], unsigned);
/* Input; uncompress */
if (flags & H5Z_FLAG_REVERSE) {
uint32_t stored_nalloc; /* Number of bytes the compressed block will expand into */
size_t nalloc; /* Number of bytes the compressed block will expand into */
/* Get the size of the uncompressed buffer */
newbuf = (unsigned char *)(*buf);
UINT32DECODE(newbuf,stored_nalloc);
H5_CHECKED_ASSIGN(nalloc, size_t, stored_nalloc, uint32_t);
/* Allocate space for the uncompressed buffer */
if(NULL == (outbuf = (unsigned char *)H5MM_malloc(nalloc)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, 0, "memory allocation failed for szip decompression")
/* Decompress the buffer */
size_out=nalloc;
if(SZ_BufftoBuffDecompress(outbuf, &size_out, newbuf, nbytes-4, &sz_param) != SZ_OK)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, 0, "szip_filter: decompression failed")
HDassert(size_out==nalloc);
/* Free the input buffer */
H5MM_xfree(*buf);
/* Set return values */
*buf = outbuf;
outbuf = NULL;
*buf_size = nalloc;
ret_value = size_out;
}
/* Output; compress */
else {
unsigned char *dst = NULL; /* Temporary pointer to new output buffer */
/* Allocate space for the compressed buffer & header (assume data won't get bigger) */
if(NULL == (dst=outbuf = (unsigned char *)H5MM_malloc(nbytes+4)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, 0, "unable to allocate szip destination buffer")
/* Encode the uncompressed length */
H5_CHECK_OVERFLOW(nbytes,size_t,uint32_t);
UINT32ENCODE(dst,nbytes);
/* Compress the buffer */
size_out = nbytes;
if(SZ_OK!= SZ_BufftoBuffCompress(dst, &size_out, *buf, nbytes, &sz_param))
HGOTO_ERROR(H5E_PLINE, H5E_CANTINIT, 0, "overflow")
HDassert(size_out<=nbytes);
/* Free the input buffer */
H5MM_xfree(*buf);
/* Set return values */
*buf = outbuf;
outbuf = NULL;
*buf_size = nbytes+4;
ret_value = size_out+4;
}
done:
if(outbuf)
H5MM_xfree(outbuf);
FUNC_LEAVE_NOAPI(ret_value)
}
/* External Discovery Functions */
DLLEXPORT
H5PL_type_t
H5PLget_plugin_type(void)
{
return H5PL_TYPE_FILTER;
}
DLLEXPORT
const void*
H5PLget_plugin_info(void)
{
return H5Z_SZIP;
}
#endif /* HAVE_SZ */
|