1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
|
# to run: mpirun -np 4 python mpi_example.py
import sys
from mpi4py import MPI
import numpy as np
from netCDF4 import Dataset
nc_format = 'NETCDF4_CLASSIC' if len(sys.argv) < 2 else sys.argv[1]
rank = MPI.COMM_WORLD.rank # The process ID (integer 0-3 for 4-process run)
if rank == 0:
print('Creating file with format {}'.format(nc_format))
nc = Dataset(
"parallel_test.nc",
"w",
parallel=True,
comm=MPI.COMM_WORLD,
info=MPI.Info(),
format=nc_format, # type: ignore # we'll assume it's OK
)
# below should work also - MPI_COMM_WORLD and MPI_INFO_NULL will be used.
#nc = Dataset('parallel_test.nc', 'w', parallel=True)
d = nc.createDimension('dim',4)
v = nc.createVariable('var', np.int32, 'dim')
v[rank] = rank
# switch to collective mode, rewrite the data.
v.set_collective(True)
v[rank] = rank
nc.close()
# reopen the file read-only, check the data
nc = Dataset('parallel_test.nc', parallel=True, comm=MPI.COMM_WORLD,
info=MPI.Info())
assert rank==nc['var'][rank]
nc.close()
# reopen the file in append mode, modify the data on the last rank.
nc = Dataset('parallel_test.nc', 'a',parallel=True, comm=MPI.COMM_WORLD,
info=MPI.Info())
if rank == 3: v[rank] = 2*rank
nc.close()
# reopen the file read-only again, check the data.
# leave out the comm and info kwargs to check that the defaults
# (MPI_COMM_WORLD and MPI_INFO_NULL) work.
nc = Dataset('parallel_test.nc', parallel=True)
if rank == 3:
assert 2*rank==nc['var'][rank]
else:
assert rank==nc['var'][rank]
nc.close()
|
