1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
|
.. -*- mode: rst; fill-column: 78 -*-
.. ex: set sts=4 ts=4 sw=4 et tw=79:
.. _projects:
********************
NeuroDebian Projects
********************
We share a lot of common interests with other teams in Debian. So we are
actively collaborating with `Debian Med`_ and `Debian Science`_ projects to
improve Debian_ infrastructure and software coverage to fulfil our goals.
This page provides an overview of current and planned NeuroDebian_ projects. Each description
lists a couple of tasks remaining to reach the goal of a
particular project. If you want to contribute, take a look at them and email the
neurodebian-devel_ mailing list with your intention to help.
Expanding coverage
------------------
* :ref:`project_matlab`
* Neuroimaging
- :ref:`project_afni`
- :ref:`Packaging SPM8 <project_matlab>`
- :ref:`project_freesurfer`
* :ref:`project_psychophysics`
* :ref:`project_electrophysiology`
* :ref:`Neural modeling <project_neuralmodeling>`
Please refer to the `complete list of perspective packages
<http://qa.debian.org/wnpp.php?login=team%40neuro.debian.net>`_ which we are
working on (|ITP|\s) or just placed on the radars of Debian project (|RFP|\s).
Infrastructure
--------------
* :ref:`project_debtest`
* :ref:`project_snapshots`
* :ref:`coffeeart`
Cross-platform availability
---------------------------
* :ref:`chap_vm`
* Live CD (`preliminary version <http://neuro.debian.net/debian/live/>`_)
* Cloud computing
Expertise transfer
------------------
* `Best practices for deploying scientific software <https://github.com/neurodebian/SciDeployGuide>`_
* Advise (e.g. on legal, deployment aspects) and contribute upstream projects
* Whenever necessary mentor and sponsor uploads of relevant projects into Debian_
Promotion
---------
.. raw:: html
<div class="expandinstructions">Click on an item to expand it</div>
* `Publications <http://neuro.debian.net/index.html#publications>`_ and
promotional materials
- `(Neuro)Debian tri-fold
<http://neuro.debian.net/_files/brochure_debian-neurodebian.pdf>`_
* Conferences presence of the team presenting Debian_,
NeuroDebian_, and related work:
**May 2-6, 2011** `Paradyn/Condor Week <http://www.cs.wisc.edu/condor/ParadynCondorWeek2011>`_, Madison, Wisconsin, USA
Hanke, M. `Talk: Integrating Condor into the Debian operating system <http://www.cs.wisc.edu/condor/ParadynCondorWeek2011/presentations/hanke-condor-debian.pdf>`__
**June 26-30, 2011** `HBM 2011 <http://www.humanbrainmapping.org/HBM2011>`_, Québec City, Canada
Debian/NeuroDebian booth `#108 <http://www.humanbrainmapping.org/files/2011MeetingFiles/Exhibit_Floor_Plan-5_10_2011.PDF>`__
**July 21-23, 2011** `PsychoPy Workshop and Codesprint <https://scanlab.psych.yale.edu/public/psychopy>`_, New Haven, CT, USA
**August 25-30, 2011** `EuroSciPy 2011/ Python in NeuroScience <http://www.euroscipy.org/conference/euroscipy2011>`_, Paris, France
2011/08/27, 16:30 -- 17:00, Scientific track
Halchenko, Yaroslav O. `Talk: π's in Debian or Scientific Debian: NumPy,
SciPy and beyond <http://www.euroscipy.org/talk/4379>`__
2011/08/29, 14:00 -- 14:30, Neuroimaging data processing
Halchenko, Yaroslav O. `Talk: The virtues and sins of PyMVPA <http://pythonneuro.sciencesconf.org/899>`__
2011/08/30, 10:30 -- 10:45, Workflows and pipelines for data processing
Hanke, M. `Talk: More than batteries included: NeuroDebian <http://pythonneuro.sciencesconf.org/883>`__
2011/08/30, 12:00 -- 12:15, Data management and databasing
Hanke, M. `Talk: NiBabel: Conductor for a cacophony of neuro-imaging file formats <http://pythonneuro.sciencesconf.org/901>`__
**September 8, 2011** `INCF Cross-Task Force Hackathon <http://atlasing.incf.org/wiki/Sept8>`_, Boston, MA, USA
**November 12-16, 2011** `SfN 2011 <http://www.sfn.org/am2011/>`_, Washington, District Columbia, USA
Booth #3207
* `Invite us <mailto:team@neuro.debian.net>`_ to talk about NeuroDebian.
* `Inviting contributions and new members to join the NeuroDebian project
<https://openhatch.org/+projects/NeuroDebian>`_
..
Planned projects
----------------
..
Finished projects
-----------------
.. toctree::
:maxdepth: 1
vm
.. toctree::
:hidden:
:maxdepth: 1
proj_afni
proj_debtest
proj_electrophys
proj_psychophysics
proj_freesurfer
proj_matlab
proj_neuralmodeling
proj_snapshots
proj_template
livecd
coffeeart
.. include:: link_names.txt
|
