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neuron 7.6.3-1
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begintemplate NetCell
public type, x, y // NetReadyCell or ArtCell, location
//implementation
public create1, real, replace
objref real
public name, pl, index
objref type
proc init() {
	type = $o1
	x = $2
	y = $3
	index = -1
}
proc name() {local i
	sprint($s1, "%s%d", type.name, index)
}
proc pl() {local i
	name($s2)
	$o1.label(x, y, $s2, 1, 1, .5, .5, $3)
}
proc create1() {
	type.create1(real)
	real.position(x, y, 0)
}
proc replace() { //NetReadyCell or ArtCell
	type = $o1
	if (object_id(real)) {
		create1()
	}
}
endtemplate NetCell

begintemplate NetSource
public cell // NetCell
//implementation
public edges // list of NetEdge
objref cell, edges

proc init() {
	cell = $o1
	edges = new List()
}

endtemplate NetSource

begintemplate NetTarget
public cell, syn //NetCell, SynTypeInstance (or nil if NetCell is an ArtCell)
// implementation
public edges, synindex //list of NetEdge
objref cell, syn, edges
proc init() {
	cell = $o1
	synindex = $2
	if (cell.type.is_art == 0) {
		syn = cell.type.synlist.object(synindex)
	}
	edges = new List()
}
endtemplate NetTarget

begintemplate NetEdge
public source, target, w, d //NetCell, NetTarget, weight, delay
//implementation
public create1, netcon, w, d, name, change, namebar
objref netcon
objref source, target
proc init() {
	source = $o1
	target = $o2
	w = $3
	d = $4
}
proc create1() {
	if (target.cell.type.is_art) {
		netcon = source.cell.real.connect2target(target.cell.real.pp)
	}else{
		netcon = source.cell.real.connect2target( \
		   target.cell.real.synlist.object(target.synindex))
	}
	netcon.weight = w
	netcon.delay = d
}
proc change() {
	if (object_id(netcon) != 0) {
		netcon.weight = w
		netcon.delay = d
	}
}
proc name() {
	source.cell.name($s1)
	if (target.cell.type.is_art) {
		sprint($s1, "%s->%s%d", $s1, target.cell.type.name, \
			target.cell.index)
	}else{
		sprint($s1, "%s->%s%d.%s%d", $s1, target.cell.type.name, \
		 target.cell.index, target.syn.stype.name,target.syn.index)
	}
}
proc namebar() {
	source.cell.name($s1)
	if (target.cell.type.is_art) {
		sprint($s1, "%s__%s%d", $s1, target.cell.type.name, \
			target.cell.index)
	}else{
		sprint($s1, "%s__%s%d_%s%d", $s1, target.cell.type.name, \
		 target.cell.index, target.syn.stype.name,target.syn.index)
	}
}
endtemplate NetEdge

begintemplate NetData
public sources, targets, edges // lists of NetCell, NetTarget, NetEdge
public add_edge, remove_edge, edge_index
public add_cell, remove_cell, replace_cell
public cel2tar
//implementation
public create1, created_, abstract
objref sources, targets, edges, cel2tar_
objref tobj, nil, oldtype

proc init() {
	created_ = 0
	sources = new List()
	targets = new List()
	edges = new List()
	cel2tar_ = new Vector(0)
}
func add_edge() {
	edges.append($o1)
	$o1.source.edges.append($o1)
	$o1.target.edges.append($o1)
	if (created_) {$o1.create1()}
	return edges.count-1
}
// room for elimination of one of the index searches in the following if
// pass index to remove_edge or return object in edge_index
func remove_edge() {local i
	i = edges.index($o1)
	edges.remove(i)
	$o1.source.edges.remove($o1.source.edges.index($o1))
	$o1.target.edges.remove($o1.target.edges.index($o1))
	return i
}
func edge_index() {local i //NetSource, NetTarget -- return edges index
	// in case of multiples it is the first one in source list
	for i=0, $o1.edges.count-1 {
		if ($o1.edges.object(i).target == $o2) {
			return edges.index($o1.edges.object(i))
		}
	}
	return -1
}

proc add_cell() {local i // NetCell
	cel2tar_update_ = 1
	sources.append(new NetSource($o1))
	if ($o1.type.is_art) {
		targets.append(new NetTarget($o1, 0))
	}else{
		for i=0, $o1.type.synlist.count-1 {
		  targets.append(new NetTarget($o1, i))
		}
	}
	$o1.index = sources.count - 1
	if (created_) {
		$o1.create1()
	}
}

proc remove_cell() { local i // NetCell
	cel2tar_update_ = 1
	sources.remove($o1.index)
	for i=$o1.index, sources.count-1 {
		sources.object(i).cell.index = i
	}
	for (i=targets.count-1; i >= 0; i -= 1) {
		if (targets.object(i).cell == $o1) {
			targets.remove(i)
		}
	}
	for (i=edges.count-1; i >= 0; i -= 1) {
		if (edges.object(i).source.cell == $o1 || edges.object(i).target.cell == $o1) {
			edges.object(i).netcon = nil
			edges.remove(i)
		}
	}
	$o1.real = nil
}

proc replace_cell() { local i, j, r //NetCell, NetReadyCell or ArtCell
	if ($o1.type == $o2) {
		return
	}
	cel2tar_update_ = 1
	// get rid of NetCon first to avoid bug when real cell deleted
	if (created_) for i=0, edges.count - 1 {
		tobj = edges.object(i)
		if (tobj.source.cell == $o1 || tobj.target.cell == $o1) {
			tobj.netcon = nil
		}
	}

	oldtype = $o1.type
	$o1.replace($o2)

	r = 1
	if (oldtype.is_art == 0 && $o2.is_art == 0) {
		if (oldtype.synlist.count != $o1.synlist.count) {
			// incompatible target replacement
			r = 0
		}
	}
   if (r == 0) { // target list is must be made consistent
	// must remove target edges since no unambiguous map from old to new
	for (i=targets.count-1; i >= 0; i -= 1) {
		if (targets.object(i).cell == $o1) {
			targets.remove(i)
		}
	}
	for (i=edges.count-1; i >= 0; i -= 1) {
		if (edges.object(i).target.cell == $o1) {
			edges.object(i).netcon = nil
			edges.remove(i)
		}
	}
	if ($o1.type.is_art) {
		targets.append(new NetTarget($o1, 0))
	}else{
		for i=0, $o1.type.synlist.count-1 {
		  targets.append(new NetTarget($o1, i))
		}
	}
    }else{ // target list is consistent but synapses and netcon must be updated
	for i=0, targets.count-1 {
		tobj = targets.object(i)
		if (tobj.cell == $o1) {
			if ($o2.is_art == 0) {
				tobj.syn = $o1.synlist.object(tobj.synindex)
			}
			if (created_) {
				for j=0, tobj.edges.count-1 {
					tobj.edges.object(j).create1()
				}
			}
		}
	}		
    }
	// in any case we can keep the source edges
	if (created_) for i=0, edges.count - 1 {
		if (edges.object(i).source.cell == $o1) {
			edges.object(i).create1()
		}
	}
}	

func cel2tar() {
	if (cel2tar_update_) { cel2tar_update() }
	return cel2tar_.x[$1] + $2
}

proc cel2tar_update() { local n
	cel2tar_.resize(sources.count)
	if (sources.count > 0) {
		cel2tar_.x[0] = 0
	}
	for i=0, sources.count-2 {
		if (sources.object(i).cell.type.is_art) {
			n = 1
		}else{
			n = sources.object(i).cell.type.synlist.count
		}
		cel2tar_.x[i+1] = cel2tar_.x[i] + n
	}
	cel2tar_update_ = 0
}

proc create1() {local i
	created_ = 1
	for i=0, sources.count-1 {
		sources.object(i).cell.create1()
	}
	for i=0, edges.count-1 {
		edges.object(i).create1()
	}
}

proc abstract() { local i
	created_ = 0
	for i=0, edges.count-1 {
		edges.object(i).netcon = nil
	}
	for i=0, sources.count-1 {
		sources.object(i).cell.real = nil
	}
}

endtemplate NetData