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.. _exercises2018:
NEURON Course Exercises
=======================
These exercises are adapted from the 2018 NEURON summer course given in Atlanta, Georgia.
1.
:ref:`intro_to_gui`
* Lipid bilayer model
2.
:ref:`interactive_modeling`
* Squid axon model
3.
:ref:`the_cellbuilder`
* Constructing a ball and stick model, saving session files
4.
:ref:`using_morphometric_data`
* The Import3D tool
5.
:ref:`neuron_scripting_exercises`
6.
:ref:`using_nmodl_files`
* Single compartment model with HHk mechanism
7.
:ref:`using_modeldb_and_modelview`
* Neuroinformatics tools for finding and understanding models
8.
:ref:`rxd_exercises`
9.
:ref:`specifying_inhomogeneous_channel_distributions_with_the_cellbuilder`
10.
:ref:`custom_initialization`
11.
:ref:`introduction_to_the_linear_circuit`
* A two-electrode voltage clamp
12.
:ref:`state_and_parameter_discontinuities`
13.
:ref:`Bulletin board parallelization <batch_runs_with_bulletin_board_parallelization>`
* Speed up embarrassingly parallel tasks
14.
:ref:`hoc_exercises`
* Introduction to the HOC programming language
15.
:ref:`multithread_parallelization`
16.
:ref:`Networks: discrete event simulations with artificial cells <intro_to_the_network_builder>`
* Introduction to the Network Builder
17.
:ref:`Networks: continuous simulation of nets with biophysical model cells <network_ready_cells_from_the_cellbuilder>`
* Network ready cells from the CellBuilder
18.
:ref:`Hopfield-Brody network in Python <hopfield_brody_network_in_python>`
19.
:ref:`MPI Parallelization <mpi_parallelization>`
20.
:ref:`using_nsg_portal`
21.
:ref:`numerical_methods_exercises`
22.
:ref:`electrotonic_analysis`
.. toctree::
:hidden:
intro_to_gui.rst
interactive_modeling.rst
the_cellbuilder.rst
neuron_scripting_exercises.rst
using_morphometric_data
using_nmodl_files.rst
using_modeldb_and_modelview.rst
rxd_exercises.rst
specifying_inhomogeneous_channel_dis.rst
custom-initialization.rst
introduction_to_the_linear_circuit.rst
state_and_parameter_discontinuities.rst
batch_runs_with_bulletin_board.rst
hoc_exercises.rst
multithread_parallelization.rst
intro_to_the_network_builder.rst
network_ready_cells_from_the_cellb.rst
hopfield_brody_network_in_python.rst
mpi_parallelization.rst
using_nsg_portal.rst
numerical-methods-exercises.rst
electrotonic_analysis.rst
|
