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.. NEURON documentation master file, created by
sphinx-quickstart on Fri Nov 15 09:46:09 2019.
The NEURON Simulator
====================
NEURON is a simulator for neurons and networks of neurons that runs efficiently on your local machine, in the cloud, or on an HPC.
Build and simulate models using Python, HOC, and/or NEURON's graphical interface. From this page you can watch :ref:`recorded NEURON classes <training_videos>`,
read the :ref:`Python <python_prog_ref>` or :ref:`HOC <hoc_prog_ref>` programmer's references,
`browse the NEURON forum <https://www.neuron.yale.edu/phpBB/>`_,
explore the `source code for over 750 NEURON models on ModelDB <https://senselab.med.yale.edu/ModelDB/ModelList?id=1882&allsimu=true>`_, and more (use the links on the side or search).
.. toctree::
:maxdepth: 1
:caption: Building:
:hidden:
install/install
cmake_doc/index
install/developer
.. toctree::
:maxdepth: 2
:caption: User documentation:
:hidden:
videos/index
guide/index
courses/exercises2018
The NEURON forum <https://neuron.yale.edu/phpBB>
publications
publications-using-neuron
.. toctree::
:maxdepth: 2
:caption: NEURON scripting:
:hidden:
python/index
hoc/index
otherscripting.rst
tutorials/index
rxd-tutorials/index
coreneuron/index
.. toctree::
:maxdepth: 2
:caption: Developer documentation:
:hidden:
scm/index
dev/index
doxygen
.. toctree::
:maxdepth: 1
:caption: Removed Features
:hidden:
removed_features.rst
.. toctree::
:maxdepth: 1
:caption: Changelog
:hidden:
changelog.md
.. image:: neuron-overview.jpg
:width: 75%
:align: center
:alt: NEURON image with ShapePlot, code, and cortical column
Installation
------------
.. tab-set::
.. tab-item:: macOS
The recommended installation is to:
.. code::
pip3 install neuron
Alternatively, you can use the `PKG installer <https://github.com/neuronsimulator/nrn/releases/download/8.2.6/nrn-8.2.6-macosx-10.9-universal2-py-38-39-310-311-312-313.pkg>`_.
For troubleshooting, see the `detailed installation instructions <install/install_instructions.html>`_.
.. tab-item:: Linux
The recommended installation is to:
.. code::
pip3 install neuron
For troubleshooting, see the `detailed installation instructions <install/install_instructions.html>`_.
.. tab-item:: Windows
`Download the Windows Installer <https://github.com/neuronsimulator/nrn/releases/download/8.2.6/nrn-8.2.6.w64-mingw-py-38-39-310-311-312-setup.exe>`_.
You can also install the Linux wheel via the Windows Subsystem for Linux (WSL). See `instructions <install/install_instructions.html#windows-subsystem-for-linux-wsl-python-wheel>`_.
For troubleshooting, see the `detailed installation instructions <install/install_instructions.html>`_.
.. tab-item:: Cloud
On `Google Colab <https://colab.research.google.com>`_ and many other cloud Jupyter providers, you can install
NEURON via
.. code::
!pip install neuron
NEURON is already installed on `The Neuroscience Gateway <https://www.nsgportal.org>`_
and on `EBRAINS <https://ebrains.eu>`_.
.. tab-item:: Source code
View and suggest changes to the source code at:
`github.com/neuronsimulator/nrn <https://github.com/neuronsimulator/nrn>`_
For instructions on how to build from source,
`go here <install/install_instructions.html#installing-source-distributions>`_.
.. raw:: html
<script>
// script for OS detection from http://stackoverflow.com/questions/7044944/jquery-javascript-to-detect-os-without-a-plugin
osName = 'Unknown';
function nav(x, y, z) {
z = z || y;
if (navigator[x] && navigator[x].indexOf(y) !== -1) {
osName = z;
}
}
/* navigator value download */
nav("appVersion", "Mac", "MacOS");
nav("appVersion", "Linux");
nav("userAgent", "Linux");
nav("platform", "Linux");
nav("appVersion", "Win", "Windows");
nav("userAgent", "Windows");
nav("platform", "Win", "Windows");
nav("oscpu", "Windows");
if (osName == "MacOS") {
$("#installation input")[0].checked = true;
} else if (osName == "Linux") {
$("#installation input")[1].checked = true;
} else if (osName == "Windows") {
$("#installation input")[2].checked = true;
}
</script>
|
See also the NEURON documentation `index <genindex.html>`_ and the `NEURON forum <https://www.neuron.yale.edu/phpbb/>`_.
|
