File: test_distance.py

package info (click to toggle)
neuron 8.2.6-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 34,760 kB
  • sloc: cpp: 149,571; python: 58,465; ansic: 50,329; sh: 3,510; xml: 213; pascal: 51; makefile: 35; sed: 5
file content (22 lines) | stat: -rw-r--r-- 637 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
def test_distance(neuron_instance):
    """Test 1D diffusion in a single section"""

    h, rxd, data, save_path = neuron_instance

    soma = h.Section(name="soma")
    dend = h.Section(name="dend")

    dend.connect(soma)

    cyt = rxd.Region([soma, dend], name="cyt")
    c = rxd.Species(cyt, name="c")

    assert h.distance(soma(0.5), dend(1)) == 150
    assert h.distance(soma(0.5), c.nodes[1]) == 100
    assert h.distance(c.nodes(soma), c.nodes(dend)) == 100

    h.distance(0, c.nodes(dend))
    assert h.distance(1, sec=dend) == 50

    assert h.distance(c.nodes[1], sec=soma) == 0
    assert h.distance(c.nodes(soma)) == 100