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<project>
<!-- This file is currently for use on Windows; Linux/Mac builds are run via gmake -->
<property name="Platform" value="x64" />
<property name="Configuration" value="Debug" />
<property name="Output" value="${basedir}\..\..\OUTDIR" />
<property name="MSVS" value="2013" />
<condition property="PlatformToolset" value="v100" else="v120">
<equals arg1="${MSVS}" arg2="2010"/>
</condition>
<property name="vdb.dir" value="${Output}\ncbi-vdb\win\${PlatformToolset}\${Platform}\${Configuration}\bin" />
<property name="ngs.dir" value="${Output}\ngs-sdk\win\${PlatformToolset}\${Platform}\${Configuration}\bin" />
<property name="build.dir" value="${Output}\ngs-java" />
<property name="classes.dir" value="${build.dir}\cls" />
<target name="clean">
<delete dir="${build.dir}"/>
</target>
<target name="api">
<mkdir dir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="ngs" destdir="${classes.dir}"/>
</target>
<target name="ncbi" depends="api">
<mkdir dir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="gov" destdir="${classes.dir}"/>
</target>
<target name="examples" depends="ncbi">
<mkdir dir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="examples\examples" includes="FragTest.java" destdir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="examples\examples" includes="AlignTest.java" destdir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="examples\examples" includes="AlignSliceTest.java" destdir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="examples\examples" includes="PileupTest.java" destdir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="examples\examples" includes="ReadGroupTest.java" destdir="${classes.dir}"/>
<javac includeantruntime="false" srcdir="examples\examples" includes="RefTest.java" destdir="${classes.dir}"/>
</target>
<target name="jar" depends="ncbi">
<mkdir dir="${build.dir}\jar"/>
<jar destfile="${build.dir}\jar\ngs-java.jar" >
<fileset dir="${classes.dir}" includes="ngs\**" />
<fileset dir="${classes.dir}" includes="gov\**" />
</jar>
</target>
<target name="examples-jar" depends="examples">
<mkdir dir="${build.dir}\jar"/>
<jar destfile="${build.dir}\jar\ngs-examples.jar" basedir="${classes.dir}" includes="examples\**" />
</target>
<condition property="JVMbits" value="64" else="32">
<equals arg1="${Platform}" arg2="x64"/>
</condition>
<macrodef name="run-example">
<attribute name="class" />
<element name="args" optional="yes" />
<sequential>
<java classname="examples.@{class}" fork="true" failonerror="true" >
<classpath>
<pathelement location="${build.dir}\jar\ngs-examples.jar" />
<pathelement location="${build.dir}\jar\ngs-java.jar" />
</classpath>
<sysproperty key="java.library.path" path="${vdb.dir};${ngs.dir}" />
<sysproperty key="vdb.System.loadLibrary" value="1" />
<sysproperty key="vdb.log" value="FINEST" />
<jvmarg value="-d${JVMbits}" />
<args />
</java>
<!-- TODO: use fc to diff output against expected -->
</sequential>
</macrodef>
<target name="run" depends="jar,examples-jar">
<run-example class="FragTest">
<args>
<arg value="ERR225922" />
<arg value="10000" />
<arg value="2" />
</args>
</run-example>
<run-example class="AlignTest">
<args>
<arg value="ERR225922" />
<arg value="10000" />
<arg value="2" />
</args>
</run-example>
<run-example class="AlignSliceTest">
<args>
<arg value="SRR1121656" />
<arg value="1" />
<arg value="1" />
<arg value="9999" />
</args>
</run-example>
<run-example class="PileupTest">
<args>
<arg value="SRR1121656" />
<arg value="1" />
<arg value="9999" />
<arg value="10003" />
</args>
</run-example>
<run-example class="ReadGroupTest">
<args>
<arg value="SRR1121656" />
</args>
</run-example>
<run-example class="RefTest">
<args>
<arg value="SRR1121656" />
</args>
</run-example>
</target>
<target name="build" depends="jar"/>
</project>
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