1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87
|
<project>
<!-- This file is currently for use on Windows; Linux/Mac builds are run via gmake -->
<property environment="env"/>
<property name="Platform" value="x64" />
<property name="Configuration" value="Debug" />
<property name="Output" value="${basedir}\..\..\OUTDIR" />
<property name="MSVS" value="2013" />
<condition property="PlatformToolset" value="v100" else="v120">
<equals arg1="${MSVS}" arg2="2010"/>
</condition>
<property name="vdb.dir" value="${Output}\ncbi-vdb\win\${PlatformToolset}\${Platform}\${Configuration}\bin" />
<property name="ngs.dir" value="${Output}\ngs-sdk\win\${PlatformToolset}\${Platform}\${Configuration}\bin" />
<!-- Set this to full path to Python if not in PATH already -->
<property name="python.exe" value="python" />
<target name="install">
<exec executable="${python.exe}" failonerror="true" >
<arg value="setup.py" />
<arg value="install" />
<arg value="--user" />
</exec>
</target>
<macrodef name="run-example">
<attribute name="class" />
<element name="args" optional="yes" />
<sequential>
<exec executable="${python.exe}" failonerror="true">
<env key="PATH" value="${vdb.dir};${ngs.dir};${env.PATH}"/>
<env key="NGS_PY_DOWNLOAD_LIBRARY" value="0"/>
<arg value="examples/@{class}.py"/>
<args />
</exec>
<!-- TODO: use fc to diff output against expected -->
</sequential>
</macrodef>
<target name="run" depends="install">
<run-example class="FragTest">
<args>
<arg value="ERR225922" />
<arg value="10000" />
<arg value="2" />
</args>
</run-example>
<run-example class="AlignTest">
<args>
<arg value="ERR225922"/>
<arg value="1000"/>
<arg value="2"/>
</args>
</run-example>
<run-example class="AlignSliceTest">
<args>
<arg value="SRR1121656"/>
<arg value="1"/>
<arg value="1"/>
<arg value="9999"/>
</args>
</run-example>
<run-example class="PileupTest">
<args>
<arg value="SRR1121656"/>
<arg value="1"/>
<arg value="9999"/>
<arg value="10003"/>
</args>
</run-example>
<run-example class="RefTest">
<args>
<arg value="SRR1121656"/>
</args>
</run-example>
</target>
<target name="clean" />
<target name="build" />
</project>
|