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# ===========================================================================
#
# PUBLIC DOMAIN NOTICE
# National Center for Biotechnology Information
#
# This software/database is a "United States Government Work" under the
# terms of the United States Copyright Act. It was written as part of
# the author's official duties as a United States Government employee and
# thus cannot be copyrighted. This software/database is freely available
# to the public for use. The National Library of Medicine and the U.S.
# Government have not placed any restriction on its use or reproduction.
#
# Although all reasonable efforts have been taken to ensure the accuracy
# and reliability of the software and data, the NLM and the U.S.
# Government do not and cannot warrant the performance or results that
# may be obtained by using this software or data. The NLM and the U.S.
# Government disclaim all warranties, express or implied, including
# warranties of performance, merchantability or fitness for any particular
# purpose.
#
# Please cite the author in any work or product based on this material.
#
# ===========================================================================
default: std
TOP ?= $(CURDIR)
MODPATH =
include $(TOP)/Makefile.config
INTLIBS = \
EXTLIBS = \
TARGETS = \
all std: $(TARGETS)
clean:
copyexamples:
@ echo "Installing examples to $(INST_SHAREDIR)/examples-python"
@ mkdir -p $(INST_SHAREDIR)/examples-python
@ cp $(TOP)/examples/*.py $(TOP)/examples/Makefile $(INST_SHAREDIR)/examples-python
#-------------------------------------------------------------------------------
# install
#
ifeq (mac, $(OS))
$(INST_PYTHONDIR):
@ mkdir -p $@
install: $(TARGETS) $(INST_PYTHONDIR) copyexamples
ifeq (0, $(shell id -u))
@ echo "Installing ngs-python package..."
@ python setup.py -q install
else
@ echo "Installing ngs-python package..."
@ python setup.py -q install --user
endif
endif
ifeq (linux, $(OS))
# unset outside defined variables
ROOT =
#fake root for debugging
#uncomment this line and change the test for root ( see under install: ) to succeed:
#ROOT = ~/root
PROFILE_FILE = $(ROOT)/etc/profile.d/ngs-python
$(INST_PYTHONDIR):
@ mkdir -p $@
install: $(TARGETS) $(INST_PYTHONDIR) copyexamples
ifeq (0, $(shell id -u))
@ echo "Installing ngs-python package..."
@ python setup.py -q install
else
@ echo "Installing ngs-python package to the current user..."
echo '$$ python -m site --user-base'
python -m site --user-base
echo '$$ python -m site --user-site'
python -m site --user-site
python setup.py -q install --user
@ echo "... installed"
endif
ifneq (, $(NGS_LIBDIR))
ifneq (, $(VDB_LIBDIR))
@ echo "Please add $(NGS_LIBDIR):$(VDB_LIBDIR) to your LD_LIBRARY_PATH, e.g.:"
@ echo " export LD_LIBRARY_PATH=$(NGS_LIBDIR):$(VDB_LIBDIR):\$$LD_LIBRARY_PATH"
endif
endif
ifeq (, $(NGS_LIBDIR))
@ echo "You will need to install ngs-sdk library in order to run ngs-python."
endif
ifeq (, $(VDB_LIBDIR))
@ echo "You will need to install ncbi-vdb library in order to run ngs-python."
endif
else
install:
endif
.PHONY: default all std install $(TARGETS)
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