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Description: Two binaries:
1. tests/other-for-test.bcf.csi - has undergone a lossy transformation and source can't be recovered
2. tests/test_files/simple.tsv.gz.csi - cannot be indexed properly from the existing tsv
Hence disabled tests involving these
Author: Nilesh Patra <npatr974@gmail.com>
Forwarded: not-needed
Last-Update: 2020-11-01
--- a/tests/vcftest.nim
+++ b/tests/vcftest.nim
@@ -246,10 +246,10 @@
check variant.info.set("myflag", val) == Status.OK
check "myflag" notin variant.tostring()
- test "load index":
+ #[test "load index":
var vcf:VCF
check open(vcf, "tests/test.bcf")
- vcf.load_index("tests/other-for-test.bcf.csi")
+ vcf.load_index("tests/other-for-test.bcf.csi")]#
test "remove info from header":
var vcf:VCF
--- a/tests/bgzftest.nim
+++ b/tests/bgzftest.nim
@@ -90,7 +90,7 @@
check reg == "aaa\t4\t10"
check found == 1
- test "bgzi-query from VCF rows":
+ #[test "bgzi-query from VCF rows":
## There was a discrepancy between rec.POS (int32) and BGZI.query (int64)
var db:BGZI
check db.open("tests/test_files/simple.tsv.gz")
@@ -102,4 +102,4 @@
for row in db.query($rec.CHROM, rec.POS - 1, rec.POS):
rows.add row
check rows.len == 1
- check rows[0] == "1\t10492\tC\tT"
+ check rows[0] == "1\t10492\tC\tT"]#
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