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# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
"""
Examples of design matrices specification and and computation
(event-related design, FIR design, etc)
Author : Bertrand Thirion: 2009-2010
"""
print __doc__
import numpy as np
import pylab as mp
import nipy.neurospin.utils.design_matrix as dm
tr = 1.0
nscans = 128
frametimes = np.linspace(0, (nscans-1)*tr, nscans)
conditions = [0, 0, 0, 1, 1, 1, 3, 3, 3]
onsets = [30, 70, 100, 10, 30, 90, 30, 40, 60]
hrf_model = 'Canonical'
motion = np.cumsum(np.random.randn(128, 6), 0)
add_reg_names = ['tx', 'ty',' tz', 'rx', 'ry', 'rz']
#event-related design matrix
paradigm = dm.EventRelatedParadigm(conditions, onsets)
X1 = dm.DesignMatrix(
frametimes, paradigm, drift_model='Polynomial', drift_order=3,
add_regs=motion, add_reg_names=add_reg_names)
# block design matrix
duration = 7*np.ones(9)
paradigm = dm.BlockParadigm(index=conditions, onset=onsets, duration=duration)
X2 = dm.DesignMatrix(frametimes, paradigm, drift_model='Polynomial',
drift_order=3)
# FIR model
paradigm = dm.EventRelatedParadigm(conditions, onsets)
hrf_model = 'FIR'
X3 = dm.DesignMatrix(frametimes, paradigm, hrf_model = 'FIR',
drift_model='Polynomial', drift_order=3,
fir_delays = range(1,6))
fig = mp.figure()
ax = mp.subplot(1,3,1)
X1.show(ax=ax)
ax.set_title('example of event-related design matrix')
ax = mp.subplot(1,3,2)
X2.show(ax=ax)
ax.set_title('example of block design matrix')
ax = mp.subplot(1,3,3)
X3.show(ax=ax)
ax.set_title('example of FIR design matrix')
mp.subplots_adjust(top=0.9, bottom=0.25)
fig.set_size_inches(12, 6, forward=True)
mp.show()
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