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import os
import re
import sys
import importlib
# Minimum version, enforced by sphinx
needs_sphinx = '4.3'
# This is a nasty hack to use platform-agnostic names for types in the
# documentation.
# must be kept alive to hold the patched names
_name_cache = {}
def replace_scalar_type_names():
""" Rename numpy types to use the canonical names to make sphinx behave """
import ctypes
Py_ssize_t = ctypes.c_int64 if ctypes.sizeof(ctypes.c_void_p) == 8 else ctypes.c_int32
class PyObject(ctypes.Structure):
pass
class PyTypeObject(ctypes.Structure):
pass
PyObject._fields_ = [
('ob_refcnt', Py_ssize_t),
('ob_type', ctypes.POINTER(PyTypeObject)),
]
PyTypeObject._fields_ = [
# varhead
('ob_base', PyObject),
('ob_size', Py_ssize_t),
# declaration
('tp_name', ctypes.c_char_p),
]
# prevent numpy attaching docstrings to the scalar types
assert 'numpy.core._add_newdocs_scalars' not in sys.modules
sys.modules['numpy.core._add_newdocs_scalars'] = object()
import numpy
# change the __name__ of the scalar types
for name in [
'byte', 'short', 'intc', 'int_', 'longlong',
'ubyte', 'ushort', 'uintc', 'uint', 'ulonglong',
'half', 'single', 'double', 'longdouble',
'half', 'csingle', 'cdouble', 'clongdouble',
]:
typ = getattr(numpy, name)
c_typ = PyTypeObject.from_address(id(typ))
c_typ.tp_name = _name_cache[typ] = b"numpy." + name.encode('utf8')
# now generate the docstrings as usual
del sys.modules['numpy.core._add_newdocs_scalars']
import numpy.core._add_newdocs_scalars
replace_scalar_type_names()
# -----------------------------------------------------------------------------
# General configuration
# -----------------------------------------------------------------------------
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
sys.path.insert(0, os.path.abspath('../sphinxext'))
extensions = [
'sphinx.ext.autodoc',
'numpydoc',
'sphinx.ext.intersphinx',
'sphinx.ext.coverage',
'sphinx.ext.doctest',
'sphinx.ext.autosummary',
'sphinx.ext.graphviz',
'sphinx.ext.ifconfig',
'matplotlib.sphinxext.plot_directive',
'IPython.sphinxext.ipython_console_highlighting',
'IPython.sphinxext.ipython_directive',
'sphinx.ext.mathjax',
'sphinx_design',
]
skippable_extensions = [
('breathe', 'skip generating C/C++ API from comment blocks.'),
]
for ext, warn in skippable_extensions:
ext_exist = importlib.util.find_spec(ext) is not None
if ext_exist:
extensions.append(ext)
else:
print(f"Unable to find Sphinx extension '{ext}', {warn}.")
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix of source filenames.
source_suffix = '.rst'
# General substitutions.
project = 'NumPy'
copyright = '2008-2022, NumPy Developers'
# The default replacements for |version| and |release|, also used in various
# other places throughout the built documents.
#
import numpy
# The short X.Y version (including .devXXXX, rcX, b1 suffixes if present)
version = re.sub(r'(\d+\.\d+)\.\d+(.*)', r'\1\2', numpy.__version__)
version = re.sub(r'(\.dev\d+).*?$', r'\1', version)
# The full version, including alpha/beta/rc tags.
release = numpy.__version__
print("%s %s" % (version, release))
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
today_fmt = '%B %d, %Y'
# List of documents that shouldn't be included in the build.
#unused_docs = []
# The reST default role (used for this markup: `text`) to use for all documents.
default_role = "autolink"
# List of directories, relative to source directories, that shouldn't be searched
# for source files.
exclude_dirs = []
# If true, '()' will be appended to :func: etc. cross-reference text.
add_function_parentheses = False
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False
def setup(app):
# add a config value for `ifconfig` directives
app.add_config_value('python_version_major', str(sys.version_info.major), 'env')
app.add_lexer('NumPyC', NumPyLexer)
# While these objects do have type `module`, the names are aliases for modules
# elsewhere. Sphinx does not support referring to modules by an aliases name,
# so we make the alias look like a "real" module for it.
# If we deemed it desirable, we could in future make these real modules, which
# would make `from numpy.char import split` work.
sys.modules['numpy.char'] = numpy.char
sys.modules['numpy.testing.dec'] = numpy.testing.dec
# -----------------------------------------------------------------------------
# HTML output
# -----------------------------------------------------------------------------
html_theme = 'pydata_sphinx_theme'
html_favicon = '_static/favicon/favicon.ico'
# Set up the version switcher. The versions.json is stored in the doc repo.
if os.environ.get('CIRCLE_JOB', False) and \
os.environ.get('CIRCLE_BRANCH', '') != 'main':
# For PR, name is set to its ref
switcher_version = os.environ['CIRCLE_BRANCH']
elif ".dev" in version:
switcher_version = "devdocs"
else:
switcher_version = f"{version}"
html_theme_options = {
"logo": {
"image_light": "numpylogo.svg",
"image_dark": "numpylogo_dark.svg",
},
"github_url": "https://github.com/numpy/numpy",
"twitter_url": "https://twitter.com/numpy_team",
"collapse_navigation": True,
"external_links": [
{"name": "Learn", "url": "https://numpy.org/numpy-tutorials/"}
],
# Add light/dark mode and documentation version switcher:
"navbar_end": ["navbar-icon-links", ],
"switcher": {
"version_match": switcher_version,
"json_url": "https://numpy.org/doc/_static/versions.json",
},
}
html_title = "%s v%s Manual" % (project, version)
html_static_path = ['_static']
html_last_updated_fmt = '%b %d, %Y'
html_css_files = ["numpy.css"]
html_context = {"default_mode": "light"}
html_use_modindex = True
html_copy_source = False
html_domain_indices = False
html_file_suffix = '.html'
htmlhelp_basename = 'numpy'
if 'sphinx.ext.pngmath' in extensions:
pngmath_use_preview = True
pngmath_dvipng_args = ['-gamma', '1.5', '-D', '96', '-bg', 'Transparent']
mathjax_path = "scipy-mathjax/MathJax.js?config=scipy-mathjax"
plot_html_show_formats = False
plot_html_show_source_link = False
# -----------------------------------------------------------------------------
# LaTeX output
# -----------------------------------------------------------------------------
# The paper size ('letter' or 'a4').
#latex_paper_size = 'letter'
# The font size ('10pt', '11pt' or '12pt').
#latex_font_size = '10pt'
# XeLaTeX for better support of unicode characters
latex_engine = 'xelatex'
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, document class [howto/manual]).
_stdauthor = 'Written by the NumPy community'
latex_documents = [
('reference/index', 'numpy-ref.tex', 'NumPy Reference',
_stdauthor, 'manual'),
('user/index', 'numpy-user.tex', 'NumPy User Guide',
_stdauthor, 'manual'),
]
# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False
latex_elements = {
'fontenc': r'\usepackage[LGR,T1]{fontenc}'
}
# Additional stuff for the LaTeX preamble.
latex_elements['preamble'] = r'''
% In the parameters section, place a newline after the Parameters
% header
\usepackage{xcolor}
\usepackage{expdlist}
\let\latexdescription=\description
\def\description{\latexdescription{}{} \breaklabel}
% but expdlist old LaTeX package requires fixes:
% 1) remove extra space
\usepackage{etoolbox}
\makeatletter
\patchcmd\@item{{\@breaklabel} }{{\@breaklabel}}{}{}
\makeatother
% 2) fix bug in expdlist's way of breaking the line after long item label
\makeatletter
\def\breaklabel{%
\def\@breaklabel{%
\leavevmode\par
% now a hack because Sphinx inserts \leavevmode after term node
\def\leavevmode{\def\leavevmode{\unhbox\voidb@x}}%
}%
}
\makeatother
% Make Examples/etc section headers smaller and more compact
\makeatletter
\titleformat{\paragraph}{\normalsize\py@HeaderFamily}%
{\py@TitleColor}{0em}{\py@TitleColor}{\py@NormalColor}
\titlespacing*{\paragraph}{0pt}{1ex}{0pt}
\makeatother
% Fix footer/header
\renewcommand{\chaptermark}[1]{\markboth{\MakeUppercase{\thechapter.\ #1}}{}}
\renewcommand{\sectionmark}[1]{\markright{\MakeUppercase{\thesection.\ #1}}}
'''
# Documents to append as an appendix to all manuals.
#latex_appendices = []
# If false, no module index is generated.
latex_use_modindex = False
# -----------------------------------------------------------------------------
# Texinfo output
# -----------------------------------------------------------------------------
texinfo_documents = [
("contents", 'numpy', 'NumPy Documentation', _stdauthor, 'NumPy',
"NumPy: array processing for numbers, strings, records, and objects.",
'Programming',
1),
]
# -----------------------------------------------------------------------------
# Intersphinx configuration
# -----------------------------------------------------------------------------
intersphinx_mapping = {
'neps': ('https://numpy.org/neps', None),
'python': ('https://docs.python.org/3', '/usr/share/doc/python3/html/objects.inv'),
'scipy': ('https://docs.scipy.org/doc/scipy', '/usr/share/doc/python-scipy-doc/html/objects.inv'),
'matplotlib': ('https://matplotlib.org/stable', '/usr/share/doc/python-matplotlib-doc/html/objects.inv'),
'imageio': ('https://imageio.readthedocs.io/en/stable', '/usr/share/doc/python-imageio-doc/html/objects.inv'),
'skimage': ('https://scikit-image.org/docs/stable', '/usr/share/doc/python-skimage-doc/html/objects.inv'),
'pandas': ('https://pandas.pydata.org/pandas-docs/stable', '/usr/share/doc/python-pandas-doc/html/objects.inv'),
'scipy-lecture-notes': ('https://scipy-lectures.org', None),
'pytest': ('https://docs.pytest.org/en/stable', None),
'numpy-tutorials': ('https://numpy.org/numpy-tutorials', None),
'numpydoc': ('https://numpydoc.readthedocs.io/en/latest', None),
'dlpack': ('https://dmlc.github.io/dlpack/latest', None)
}
# -----------------------------------------------------------------------------
# NumPy extensions
# -----------------------------------------------------------------------------
# If we want to do a phantom import from an XML file for all autodocs
phantom_import_file = 'dump.xml'
# Make numpydoc to generate plots for example sections
numpydoc_use_plots = True
# -----------------------------------------------------------------------------
# Autosummary
# -----------------------------------------------------------------------------
autosummary_generate = True
# -----------------------------------------------------------------------------
# Coverage checker
# -----------------------------------------------------------------------------
coverage_ignore_modules = r"""
""".split()
coverage_ignore_functions = r"""
test($|_) (some|all)true bitwise_not cumproduct pkgload
generic\.
""".split()
coverage_ignore_classes = r"""
""".split()
coverage_c_path = []
coverage_c_regexes = {}
coverage_ignore_c_items = {}
# -----------------------------------------------------------------------------
# Plots
# -----------------------------------------------------------------------------
plot_pre_code = """
import numpy as np
np.random.seed(0)
"""
plot_include_source = True
plot_formats = [('png', 100), 'pdf']
import math
phi = (math.sqrt(5) + 1)/2
plot_rcparams = {
'font.size': 8,
'axes.titlesize': 8,
'axes.labelsize': 8,
'xtick.labelsize': 8,
'ytick.labelsize': 8,
'legend.fontsize': 8,
'figure.figsize': (3*phi, 3),
'figure.subplot.bottom': 0.2,
'figure.subplot.left': 0.2,
'figure.subplot.right': 0.9,
'figure.subplot.top': 0.85,
'figure.subplot.wspace': 0.4,
'text.usetex': False,
}
# -----------------------------------------------------------------------------
# Source code links
# -----------------------------------------------------------------------------
import inspect
from os.path import relpath, dirname
for name in ['sphinx.ext.linkcode', 'numpydoc.linkcode']:
try:
__import__(name)
extensions.append(name)
break
except ImportError:
pass
else:
print("NOTE: linkcode extension not found -- no links to source generated")
def _get_c_source_file(obj):
if issubclass(obj, numpy.generic):
return r"core/src/multiarray/scalartypes.c.src"
elif obj is numpy.ndarray:
return r"core/src/multiarray/arrayobject.c"
else:
# todo: come up with a better way to generate these
return None
def linkcode_resolve(domain, info):
"""
Determine the URL corresponding to Python object
"""
if domain != 'py':
return None
modname = info['module']
fullname = info['fullname']
submod = sys.modules.get(modname)
if submod is None:
return None
obj = submod
for part in fullname.split('.'):
try:
obj = getattr(obj, part)
except Exception:
return None
# strip decorators, which would resolve to the source of the decorator
# possibly an upstream bug in getsourcefile, bpo-1764286
try:
unwrap = inspect.unwrap
except AttributeError:
pass
else:
obj = unwrap(obj)
fn = None
lineno = None
# Make a poor effort at linking C extension types
if isinstance(obj, type) and obj.__module__ == 'numpy':
fn = _get_c_source_file(obj)
if fn is None:
try:
fn = inspect.getsourcefile(obj)
except Exception:
fn = None
if not fn:
return None
# Ignore re-exports as their source files are not within the numpy repo
module = inspect.getmodule(obj)
if module is not None and not module.__name__.startswith("numpy"):
return None
try:
source, lineno = inspect.getsourcelines(obj)
except Exception:
lineno = None
fn = relpath(fn, start=dirname(numpy.__file__))
if lineno:
linespec = "#L%d-L%d" % (lineno, lineno + len(source) - 1)
else:
linespec = ""
if 'dev' in numpy.__version__:
return "https://github.com/numpy/numpy/blob/main/numpy/%s%s" % (
fn, linespec)
else:
return "https://github.com/numpy/numpy/blob/v%s/numpy/%s%s" % (
numpy.__version__, fn, linespec)
from pygments.lexers import CLexer
from pygments.lexer import inherit, bygroups
from pygments.token import Comment
class NumPyLexer(CLexer):
name = 'NUMPYLEXER'
tokens = {
'statements': [
(r'@[a-zA-Z_]*@', Comment.Preproc, 'macro'),
inherit,
],
}
# -----------------------------------------------------------------------------
# Breathe & Doxygen
# -----------------------------------------------------------------------------
breathe_projects = dict(numpy=os.path.join("..", "build", "doxygen", "xml"))
breathe_default_project = "numpy"
breathe_default_members = ("members", "undoc-members", "protected-members")
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