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#!/usr/bin/env python3
"""
runtests.py [OPTIONS] [-- ARGS]
Run tests, building the project first.
Examples::
$ python runtests.py
$ python runtests.py -s {SAMPLE_SUBMODULE}
$ # Run a standalone test function:
$ python runtests.py -t {SAMPLE_TEST}
$ # Run a test defined as a method of a TestXXX class:
$ python runtests.py -t {SAMPLE_TEST2}
$ python runtests.py --ipython
$ python runtests.py --python somescript.py
$ python runtests.py --bench
$ python runtests.py --durations 20
Run a debugger:
$ gdb --args python runtests.py [...other args...]
Disable pytest capturing of output by using its '-s' option:
$ python runtests.py -- -s
Generate C code coverage listing under build/lcov/:
(requires http://ltp.sourceforge.net/coverage/lcov.php)
$ python runtests.py --gcov [...other args...]
$ python runtests.py --lcov-html
Run lint checks.
Provide target branch name or `uncommitted` to check before committing:
$ python runtests.py --lint main
$ python runtests.py --lint uncommitted
"""
#
# This is a generic test runner script for projects using NumPy's test
# framework. Change the following values to adapt to your project:
#
PROJECT_MODULE = "numpy"
PROJECT_ROOT_FILES = ['numpy', 'LICENSE.txt', 'setup.py']
SAMPLE_TEST = "numpy/linalg/tests/test_linalg.py::test_byteorder_check"
SAMPLE_TEST2 = "numpy/core/tests/test_memmap.py::TestMemmap::test_open_with_filename"
SAMPLE_SUBMODULE = "linalg"
EXTRA_PATH = ['/usr/lib/ccache', '/usr/lib/f90cache',
'/usr/local/lib/ccache', '/usr/local/lib/f90cache']
# ---------------------------------------------------------------------
if __doc__ is None:
__doc__ = "Run without -OO if you want usage info"
else:
__doc__ = __doc__.format(**globals())
import sys
import os, glob
# In case we are run from the source directory, we don't want to import the
# project from there:
sys.path.pop(0)
import shutil
import subprocess
import time
from argparse import ArgumentParser, REMAINDER
ROOT_DIR = os.path.abspath(os.path.join(os.path.dirname(__file__)))
def main(argv):
parser = ArgumentParser(usage=__doc__.lstrip())
parser.add_argument("--verbose", "-v", action="count", default=1,
help="Add one verbosity level to pytest. Default is 0")
parser.add_argument("--debug-info", action="store_true",
help=("Add --verbose-cfg to build_src to show "
"compiler configuration output while creating "
"_numpyconfig.h and config.h"))
parser.add_argument("--no-build", "-n", action="store_true", default=False,
help="Do not build the project (use system installed "
"version)")
parser.add_argument("--build-only", "-b", action="store_true",
default=False, help="Just build, do not run any tests")
parser.add_argument("--doctests", action="store_true", default=False,
help="Run doctests in module")
parser.add_argument("--refguide-check", action="store_true", default=False,
help="Run refguide (doctest) check (do not run "
"regular tests.)")
parser.add_argument("--coverage", action="store_true", default=False,
help=("Report coverage of project code. HTML output "
"goes under build/coverage"))
parser.add_argument("--lint", default=None,
help="'<Target Branch>' or 'uncommitted', passed to "
"tools/linter.py [--branch BRANCH] "
"[--uncommitted]")
parser.add_argument("--durations", action="store", default=-1, type=int,
help=("Time N slowest tests, time all if 0, time none "
"if < 0"))
parser.add_argument("--gcov", action="store_true", default=False,
help=("Enable C code coverage via gcov (requires "
"GCC). gcov output goes to build/**/*.gc*"))
parser.add_argument("--lcov-html", action="store_true", default=False,
help=("Produce HTML for C code coverage information "
"from a previous run with --gcov. "
"HTML output goes to build/lcov/"))
parser.add_argument("--mode", "-m", default="fast",
help="'fast', 'full', or something that could be "
"passed to nosetests -A [default: fast]")
parser.add_argument("--submodule", "-s", default=None,
help="Submodule whose tests to run (cluster, "
"constants, ...)")
parser.add_argument("--pythonpath", "-p", default=None,
help="Paths to prepend to PYTHONPATH")
parser.add_argument("--tests", "-t", action='append',
help="Specify tests to run")
parser.add_argument("--python", action="store_true",
help="Start a Python shell with PYTHONPATH set")
parser.add_argument("--ipython", "-i", action="store_true",
help="Start IPython shell with PYTHONPATH set")
parser.add_argument("--shell", action="store_true",
help="Start Unix shell with PYTHONPATH set")
parser.add_argument("--mypy", action="store_true",
help="Run mypy on files with NumPy on the MYPYPATH")
parser.add_argument("--debug", "-g", action="store_true",
help="Debug build")
parser.add_argument("--parallel", "-j", type=int, default=0,
help="Number of parallel jobs during build")
parser.add_argument("--warn-error", action="store_true",
help="Set -Werror to convert all compiler warnings to "
"errors")
parser.add_argument("--cpu-baseline", default=None,
help="Specify a list of enabled baseline CPU "
"optimizations"),
parser.add_argument("--cpu-dispatch", default=None,
help="Specify a list of dispatched CPU optimizations"),
parser.add_argument("--disable-optimization", action="store_true",
help="Disable CPU optimized code (dispatch, simd, "
"fast, ...)"),
parser.add_argument("--simd-test", default=None,
help="Specify a list of CPU optimizations to be "
"tested against NumPy SIMD interface"),
parser.add_argument("--show-build-log", action="store_true",
help="Show build output rather than using a log file")
parser.add_argument("--bench", action="store_true",
help="Run benchmark suite instead of test suite")
parser.add_argument("--bench-compare", action="store", metavar="COMMIT",
help=("Compare benchmark results of current HEAD to "
"BEFORE. Use an additional "
"--bench-compare=COMMIT to override HEAD with "
"COMMIT. Note that you need to commit your "
"changes first!"))
parser.add_argument("args", metavar="ARGS", default=[], nargs=REMAINDER,
help="Arguments to pass to pytest, asv, mypy, Python "
"or shell")
args = parser.parse_args(argv)
if args.durations < 0:
args.durations = -1
if args.bench_compare:
args.bench = True
args.no_build = True # ASV does the building
if args.lcov_html:
# generate C code coverage output
lcov_generate()
sys.exit(0)
if args.pythonpath:
for p in reversed(args.pythonpath.split(os.pathsep)):
sys.path.insert(0, p)
if args.gcov:
gcov_reset_counters()
if args.debug and args.bench:
print("*** Benchmarks should not be run against debug "
"version; remove -g flag ***")
if args.lint:
check_lint(args.lint)
if not args.no_build:
# we need the noarch path in case the package is pure python.
site_dir, site_dir_noarch = build_project(args)
sys.path.insert(0, site_dir)
sys.path.insert(0, site_dir_noarch)
os.environ['PYTHONPATH'] = \
os.pathsep.join((
site_dir,
site_dir_noarch,
os.environ.get('PYTHONPATH', '')
))
else:
if not args.bench_compare:
_temp = __import__(PROJECT_MODULE)
site_dir = os.path.sep.join(_temp.__file__.split(os.path.sep)[:-2])
extra_argv = args.args[:]
if not args.bench:
# extra_argv may also lists selected benchmarks
if extra_argv and extra_argv[0] == '--':
extra_argv = extra_argv[1:]
if args.python:
# Debugging issues with warnings is much easier if you can see them
print("Enabling display of all warnings")
import warnings
import types
warnings.filterwarnings("always")
if extra_argv:
# Don't use subprocess, since we don't want to include the
# current path in PYTHONPATH.
sys.argv = extra_argv
with open(extra_argv[0], 'r') as f:
script = f.read()
sys.modules['__main__'] = types.ModuleType('__main__')
ns = dict(__name__='__main__',
__file__=extra_argv[0])
exec(script, ns)
sys.exit(0)
else:
import code
code.interact()
sys.exit(0)
if args.ipython:
# Debugging issues with warnings is much easier if you can see them
print("Enabling display of all warnings and pre-importing numpy as np")
import warnings; warnings.filterwarnings("always")
import IPython
import numpy as np
IPython.embed(colors='neutral', user_ns={"np": np})
sys.exit(0)
if args.shell:
shell = os.environ.get('SHELL', 'cmd' if os.name == 'nt' else 'sh')
print("Spawning a shell ({})...".format(shell))
subprocess.call([shell] + extra_argv)
sys.exit(0)
if args.mypy:
try:
import mypy.api
except ImportError:
raise RuntimeError(
"Mypy not found. Please install it by running "
"pip install -r test_requirements.txt from the repo root"
)
os.environ['MYPYPATH'] = site_dir
# By default mypy won't color the output since it isn't being
# invoked from a tty.
os.environ['MYPY_FORCE_COLOR'] = '1'
config = os.path.join(
site_dir,
"numpy",
"typing",
"tests",
"data",
"mypy.ini",
)
report, errors, status = mypy.api.run(
['--config-file', config] + args.args
)
print(report, end='')
print(errors, end='', file=sys.stderr)
sys.exit(status)
if args.coverage:
dst_dir = os.path.join(ROOT_DIR, 'build', 'coverage')
fn = os.path.join(dst_dir, 'coverage_html.js')
if os.path.isdir(dst_dir) and os.path.isfile(fn):
shutil.rmtree(dst_dir)
extra_argv += ['--cov-report=html:' + dst_dir]
if args.refguide_check:
cmd = [os.path.join(ROOT_DIR, 'tools', 'refguide_check.py'),
'--doctests']
if args.verbose:
cmd += ['-' + 'v'*args.verbose]
if args.submodule:
cmd += [args.submodule]
os.execv(sys.executable, [sys.executable] + cmd)
sys.exit(0)
if args.bench:
# Run ASV
for i, v in enumerate(extra_argv):
if v.startswith("--"):
items = extra_argv[:i]
if v == "--":
i += 1 # skip '--' indicating further are passed on.
bench_args = extra_argv[i:]
break
else:
items = extra_argv
bench_args = []
if args.tests:
items += args.tests
if args.submodule:
items += [args.submodule]
for a in items:
bench_args.extend(['--bench', a])
if not args.bench_compare:
cmd = ['asv', 'run', '-n', '-e', '--python=same'] + bench_args
ret = subprocess.call(cmd, cwd=os.path.join(ROOT_DIR, 'benchmarks'))
sys.exit(ret)
else:
commits = [x.strip() for x in args.bench_compare.split(',')]
if len(commits) == 1:
commit_a = commits[0]
commit_b = 'HEAD'
elif len(commits) == 2:
commit_a, commit_b = commits
else:
p.error("Too many commits to compare benchmarks for")
# Check for uncommitted files
if commit_b == 'HEAD':
r1 = subprocess.call(['git', 'diff-index', '--quiet',
'--cached', 'HEAD'])
r2 = subprocess.call(['git', 'diff-files', '--quiet'])
if r1 != 0 or r2 != 0:
print("*"*80)
print("WARNING: you have uncommitted changes --- "
"these will NOT be benchmarked!")
print("*"*80)
# Fix commit ids (HEAD is local to current repo)
out = subprocess.check_output(['git', 'rev-parse', commit_b])
commit_b = out.strip().decode('ascii')
out = subprocess.check_output(['git', 'rev-parse', commit_a])
commit_a = out.strip().decode('ascii')
# generate config file with the required build options
asv_cfpath = [
'--config', asv_compare_config(
os.path.join(ROOT_DIR, 'benchmarks'), args,
# to clear the cache if the user changed build options
(commit_a, commit_b)
)
]
cmd = ['asv', 'continuous', '-e', '-f', '1.05',
commit_a, commit_b] + asv_cfpath + bench_args
ret = subprocess.call(cmd, cwd=os.path.join(ROOT_DIR, 'benchmarks'))
sys.exit(ret)
if args.build_only:
sys.exit(0)
else:
__import__(PROJECT_MODULE)
test = sys.modules[PROJECT_MODULE].test
if args.submodule:
tests = [PROJECT_MODULE + "." + args.submodule]
elif args.tests:
tests = args.tests
else:
tests = None
# Run the tests under build/test
if not args.no_build:
test_dir = site_dir
else:
test_dir = os.path.join(ROOT_DIR, 'build', 'test')
if not os.path.isdir(test_dir):
os.makedirs(test_dir)
shutil.copyfile(os.path.join(ROOT_DIR, '.coveragerc'),
os.path.join(test_dir, '.coveragerc'))
cwd = os.getcwd()
try:
os.chdir(test_dir)
result = test(args.mode,
verbose=args.verbose,
extra_argv=extra_argv,
doctests=args.doctests,
coverage=args.coverage,
durations=args.durations,
tests=tests)
finally:
os.chdir(cwd)
if isinstance(result, bool):
sys.exit(0 if result else 1)
elif result.wasSuccessful():
sys.exit(0)
else:
sys.exit(1)
def build_project(args):
"""
Build a dev version of the project.
Returns
-------
site_dir
site-packages directory where it was installed
"""
import sysconfig
root_ok = [os.path.exists(os.path.join(ROOT_DIR, fn))
for fn in PROJECT_ROOT_FILES]
if not all(root_ok):
print("To build the project, run runtests.py in "
"git checkout or unpacked source")
sys.exit(1)
dst_dir = os.path.join(ROOT_DIR, 'build', 'testenv')
env = dict(os.environ)
cmd = [sys.executable, 'setup.py']
# Always use ccache, if installed
env['PATH'] = os.pathsep.join(EXTRA_PATH + env.get('PATH', '').split(os.pathsep))
cvars = sysconfig.get_config_vars()
compiler = env.get('CC') or cvars.get('CC', '')
if 'gcc' in compiler:
# Check that this isn't clang masquerading as gcc.
if sys.platform != 'darwin' or 'gnu-gcc' in compiler:
# add flags used as werrors
warnings_as_errors = ' '.join([
# from tools/travis-test.sh
'-Werror=vla',
'-Werror=nonnull',
'-Werror=pointer-arith',
'-Wlogical-op',
# from sysconfig
'-Werror=unused-function',
])
env['CFLAGS'] = warnings_as_errors + ' ' + env.get('CFLAGS', '')
if args.debug or args.gcov:
# assume everyone uses gcc/gfortran
env['OPT'] = '-O0 -ggdb'
env['FOPT'] = '-O0 -ggdb'
if args.gcov:
env['OPT'] = '-O0 -ggdb'
env['FOPT'] = '-O0 -ggdb'
env['CC'] = cvars['CC'] + ' --coverage'
env['CXX'] = cvars['CXX'] + ' --coverage'
env['F77'] = 'gfortran --coverage '
env['F90'] = 'gfortran --coverage '
env['LDSHARED'] = cvars['LDSHARED'] + ' --coverage'
env['LDFLAGS'] = " ".join(cvars['LDSHARED'].split()[1:]) + ' --coverage'
cmd += ["build"]
if args.parallel > 1:
cmd += ["-j", str(args.parallel)]
if args.warn_error:
cmd += ["--warn-error"]
if args.cpu_baseline:
cmd += ["--cpu-baseline", args.cpu_baseline]
if args.cpu_dispatch:
cmd += ["--cpu-dispatch", args.cpu_dispatch]
if args.disable_optimization:
cmd += ["--disable-optimization"]
if args.simd_test is not None:
cmd += ["--simd-test", args.simd_test]
if args.debug_info:
cmd += ["build_src", "--verbose-cfg"]
# Install; avoid producing eggs so numpy can be imported from dst_dir.
cmd += ['install', '--prefix=' + dst_dir,
'--single-version-externally-managed',
'--record=' + dst_dir + 'tmp_install_log.txt']
config_vars = dict(sysconfig.get_config_vars())
config_vars["platbase"] = dst_dir
config_vars["base"] = dst_dir
site_dir_template = os.path.normpath(sysconfig.get_path(
'platlib', expand=False
))
site_dir = site_dir_template.format(**config_vars)
noarch_template = os.path.normpath(sysconfig.get_path(
'purelib', expand=False
))
site_dir_noarch = noarch_template.format(**config_vars)
# easy_install won't install to a path that Python by default cannot see
# and isn't on the PYTHONPATH. Plus, it has to exist.
if not os.path.exists(site_dir):
os.makedirs(site_dir)
if not os.path.exists(site_dir_noarch):
os.makedirs(site_dir_noarch)
env['PYTHONPATH'] = \
os.pathsep.join((site_dir, site_dir_noarch, env.get('PYTHONPATH', '')))
log_filename = os.path.join(ROOT_DIR, 'build.log')
if args.show_build_log:
ret = subprocess.call(cmd, env=env, cwd=ROOT_DIR)
else:
log_filename = os.path.join(ROOT_DIR, 'build.log')
print("Building, see build.log...")
with open(log_filename, 'w') as log:
p = subprocess.Popen(cmd, env=env, stdout=log, stderr=log,
cwd=ROOT_DIR)
try:
# Wait for it to finish, and print something to indicate the
# process is alive, but only if the log file has grown (to
# allow continuous integration environments kill a hanging
# process accurately if it produces no output)
last_blip = time.time()
last_log_size = os.stat(log_filename).st_size
while p.poll() is None:
time.sleep(0.5)
if time.time() - last_blip > 60:
log_size = os.stat(log_filename).st_size
if log_size > last_log_size:
print(" ... build in progress")
last_blip = time.time()
last_log_size = log_size
ret = p.wait()
except:
p.kill()
p.wait()
raise
if ret == 0:
print("Build OK")
else:
if not args.show_build_log:
with open(log_filename, 'r') as f:
print(f.read())
print("Build failed!")
sys.exit(1)
return site_dir, site_dir_noarch
def asv_compare_config(bench_path, args, h_commits):
"""
Fill the required build options through custom variable
'numpy_build_options' and return the generated config path.
"""
conf_path = os.path.join(bench_path, "asv_compare.conf.json.tpl")
nconf_path = os.path.join(bench_path, "_asv_compare.conf.json")
# add custom build
build = []
if args.parallel > 1:
build += ["-j", str(args.parallel)]
if args.cpu_baseline:
build += ["--cpu-baseline", args.cpu_baseline]
if args.cpu_dispatch:
build += ["--cpu-dispatch", args.cpu_dispatch]
if args.disable_optimization:
build += ["--disable-optimization"]
is_cached = asv_substitute_config(conf_path, nconf_path,
numpy_build_options = ' '.join([f'\\"{v}\\"' for v in build]),
numpy_global_options= ' '.join([f'--global-option=\\"{v}\\"' for v in ["build"] + build])
)
if not is_cached:
asv_clear_cache(bench_path, h_commits)
return nconf_path
def asv_clear_cache(bench_path, h_commits, env_dir="env"):
"""
Force ASV to clear the cache according to specified commit hashes.
"""
# FIXME: only clear the cache from the current environment dir
asv_build_pattern = os.path.join(bench_path, env_dir, "*", "asv-build-cache")
for asv_build_cache in glob.glob(asv_build_pattern, recursive=True):
for c in h_commits:
try: shutil.rmtree(os.path.join(asv_build_cache, c))
except OSError: pass
def asv_substitute_config(in_config, out_config, **custom_vars):
"""
A workaround to allow substituting custom tokens within
ASV configuration file since there's no official way to add custom
variables(e.g. env vars).
Parameters
----------
in_config : str
The path of ASV configuration file, e.g. '/path/to/asv.conf.json'
out_config : str
The path of generated configuration file,
e.g. '/path/to/asv_substituted.conf.json'.
The other keyword arguments represent the custom variables.
Returns
-------
True(is cached) if 'out_config' is already generated with
the same '**custom_vars' and updated with latest 'in_config',
False otherwise.
Examples
--------
See asv_compare_config().
"""
assert in_config != out_config
assert len(custom_vars) > 0
def sdbm_hash(*factors):
chash = 0
for f in factors:
for char in str(f):
chash = ord(char) + (chash << 6) + (chash << 16) - chash
chash &= 0xFFFFFFFF
return chash
vars_hash = sdbm_hash(custom_vars, os.path.getmtime(in_config))
try:
with open(out_config, "r") as wfd:
hash_line = wfd.readline().split('hash:')
if len(hash_line) > 1 and int(hash_line[1]) == vars_hash:
return True
except OSError:
pass
custom_vars = {f'{{{k}}}':v for k, v in custom_vars.items()}
with open(in_config, "r") as rfd, open(out_config, "w") as wfd:
wfd.write(f"// hash:{vars_hash}\n")
wfd.write("// This file is automatically generated by runtests.py\n")
for line in rfd:
for key, val in custom_vars.items():
line = line.replace(key, val)
wfd.write(line)
return False
#
# GCOV support
#
def gcov_reset_counters():
print("Removing previous GCOV .gcda files...")
build_dir = os.path.join(ROOT_DIR, 'build')
for dirpath, dirnames, filenames in os.walk(build_dir):
for fn in filenames:
if fn.endswith('.gcda') or fn.endswith('.da'):
pth = os.path.join(dirpath, fn)
os.unlink(pth)
#
# LCOV support
#
LCOV_OUTPUT_FILE = os.path.join(ROOT_DIR, 'build', 'lcov.out')
LCOV_HTML_DIR = os.path.join(ROOT_DIR, 'build', 'lcov')
def lcov_generate():
try: os.unlink(LCOV_OUTPUT_FILE)
except OSError: pass
try: shutil.rmtree(LCOV_HTML_DIR)
except OSError: pass
print("Capturing lcov info...")
subprocess.call(['lcov', '-q', '-c',
'-d', os.path.join(ROOT_DIR, 'build'),
'-b', ROOT_DIR,
'--output-file', LCOV_OUTPUT_FILE])
print("Generating lcov HTML output...")
ret = subprocess.call(['genhtml', '-q', LCOV_OUTPUT_FILE,
'--output-directory', LCOV_HTML_DIR,
'--legend', '--highlight'])
if ret != 0:
print("genhtml failed!")
else:
print("HTML output generated under build/lcov/")
def check_lint(lint_args):
"""
Adds ROOT_DIR to path and performs lint checks.
This functions exits the program with status code of lint check.
"""
sys.path.append(ROOT_DIR)
try:
from tools.linter import DiffLinter
except ModuleNotFoundError as e:
print(f"Error: {e.msg}. "
"Install using linter_requirements.txt.")
sys.exit(1)
uncommitted = lint_args == "uncommitted"
branch = "main" if uncommitted else lint_args
DiffLinter(branch).run_lint(uncommitted)
if __name__ == "__main__":
main(argv=sys.argv[1:])
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