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import importlib
import os
import re
import sys
from datetime import datetime
from docutils import nodes
from docutils.parsers.rst import Directive
# Minimum version, enforced by sphinx
needs_sphinx = '4.3'
# This is a nasty hack to use platform-agnostic names for types in the
# documentation.
# must be kept alive to hold the patched names
_name_cache = {}
def replace_scalar_type_names():
""" Rename numpy types to use the canonical names to make sphinx behave """
import ctypes
sizeof_void_p = ctypes.sizeof(ctypes.c_void_p)
Py_ssize_t = ctypes.c_int64 if sizeof_void_p == 8 else ctypes.c_int32
class PyObject(ctypes.Structure):
pass
class PyTypeObject(ctypes.Structure):
pass
PyObject._fields_ = [
('ob_refcnt', Py_ssize_t),
('ob_type', ctypes.POINTER(PyTypeObject)),
]
PyTypeObject._fields_ = [
# varhead
('ob_base', PyObject),
('ob_size', Py_ssize_t),
# declaration
('tp_name', ctypes.c_char_p),
]
import numpy
# change the __name__ of the scalar types
for name in [
'byte', 'short', 'intc', 'int_', 'longlong',
'ubyte', 'ushort', 'uintc', 'uint', 'ulonglong',
'half', 'single', 'double', 'longdouble',
'half', 'csingle', 'cdouble', 'clongdouble',
]:
typ = getattr(numpy, name)
c_typ = PyTypeObject.from_address(id(typ))
if sys.implementation.name == 'cpython':
c_typ.tp_name = _name_cache[typ] = b"numpy." + name.encode('utf8')
else:
# It is not guarenteed that the c_typ has this model on other
# implementations
_name_cache[typ] = b"numpy." + name.encode('utf8')
replace_scalar_type_names()
# As of NumPy 1.25, a deprecation of `str`/`bytes` attributes happens.
# For some reasons, the doc build accesses these, so ignore them.
import warnings
warnings.filterwarnings("ignore", "In the future.*NumPy scalar", FutureWarning)
# -----------------------------------------------------------------------------
# General configuration
# -----------------------------------------------------------------------------
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
sys.path.insert(0, os.path.abspath('../sphinxext'))
extensions = [
'sphinx.ext.autodoc',
'numpydoc',
'sphinx.ext.intersphinx',
'sphinx.ext.coverage',
'sphinx.ext.doctest',
'sphinx.ext.autosummary',
'sphinx.ext.graphviz',
'sphinx.ext.ifconfig',
'matplotlib.sphinxext.plot_directive',
'IPython.sphinxext.ipython_console_highlighting',
'IPython.sphinxext.ipython_directive',
'sphinx.ext.mathjax',
'sphinx_copybutton',
'sphinx_design',
'sphinx.ext.imgconverter',
]
skippable_extensions = [
('breathe', 'skip generating C/C++ API from comment blocks.'),
]
for ext, warn in skippable_extensions:
ext_exist = importlib.util.find_spec(ext) is not None
if ext_exist:
extensions.append(ext)
else:
print(f"Unable to find Sphinx extension '{ext}', {warn}.")
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix of source filenames.
source_suffix = '.rst'
# General substitutions.
project = 'NumPy'
year = datetime.now().year
copyright = f'2008-{year}, NumPy Developers'
# The default replacements for |version| and |release|, also used in various
# other places throughout the built documents.
#
import numpy
# The short X.Y version (including .devXXXX, rcX, b1 suffixes if present)
version = re.sub(r'(\d+\.\d+)\.\d+(.*)', r'\1\2', numpy.__version__)
version = re.sub(r'(\.dev\d+).*?$', r'\1', version)
# The full version, including alpha/beta/rc tags.
release = numpy.__version__
print(f"{version} {release}")
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
today_fmt = '%B %d, %Y'
# List of documents that shouldn't be included in the build.
#unused_docs = []
# The reST default role (used for this markup: `text`) to use for all documents.
default_role = "autolink"
# List of directories, relative to source directories, that shouldn't be searched
# for source files.
exclude_dirs = []
exclude_patterns = []
if sys.version_info[:2] >= (3, 12):
exclude_patterns += ["reference/distutils.rst"]
# If true, '()' will be appended to :func: etc. cross-reference text.
add_function_parentheses = False
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False
class LegacyDirective(Directive):
"""
Adapted from docutils/parsers/rst/directives/admonitions.py
Uses a default text if the directive does not have contents. If it does,
the default text is concatenated to the contents.
See also the same implementation in SciPy's conf.py.
"""
has_content = True
node_class = nodes.admonition
optional_arguments = 1
def run(self):
try:
obj = self.arguments[0]
except IndexError:
# Argument is empty; use default text
obj = "submodule"
text = (f"This {obj} is considered legacy and will no longer receive "
"updates. This could also mean it will be removed in future "
"NumPy versions.")
try:
self.content[0] = text + " " + self.content[0]
except IndexError:
# Content is empty; use the default text
source, lineno = self.state_machine.get_source_and_line(
self.lineno
)
self.content.append(
text,
source=source,
offset=lineno
)
text = '\n'.join(self.content)
# Create the admonition node, to be populated by `nested_parse`
admonition_node = self.node_class(rawsource=text)
# Set custom title
title_text = "Legacy"
textnodes, _ = self.state.inline_text(title_text, self.lineno)
title = nodes.title(title_text, '', *textnodes)
# Set up admonition node
admonition_node += title
# Select custom class for CSS styling
admonition_node['classes'] = ['admonition-legacy']
# Parse the directive contents
self.state.nested_parse(self.content, self.content_offset,
admonition_node)
return [admonition_node]
def setup(app):
# add a config value for `ifconfig` directives
app.add_config_value('python_version_major', str(sys.version_info.major), 'env')
app.add_lexer('NumPyC', NumPyLexer)
app.add_directive("legacy", LegacyDirective)
# While these objects do have type `module`, the names are aliases for modules
# elsewhere. Sphinx does not support referring to modules by an aliases name,
# so we make the alias look like a "real" module for it.
# If we deemed it desirable, we could in future make these real modules, which
# would make `from numpy.char import split` work.
sys.modules['numpy.char'] = numpy.char
# -----------------------------------------------------------------------------
# HTML output
# -----------------------------------------------------------------------------
html_theme = 'pydata_sphinx_theme'
html_favicon = '_static/favicon/favicon.ico'
# Set up the version switcher. The versions.json is stored in the doc repo.
if os.environ.get('CIRCLE_JOB') and os.environ['CIRCLE_BRANCH'] != 'main':
# For PR, name is set to its ref
switcher_version = os.environ['CIRCLE_BRANCH']
elif ".dev" in version:
switcher_version = "devdocs"
else:
switcher_version = f"{version}"
html_theme_options = {
"logo": {
"image_light": "_static/numpylogo.svg",
"image_dark": "_static/numpylogo_dark.svg",
},
"github_url": "https://github.com/numpy/numpy",
"collapse_navigation": True,
"external_links": [
{"name": "Learn", "url": "https://numpy.org/numpy-tutorials/"},
{"name": "NEPs", "url": "https://numpy.org/neps"},
],
"header_links_before_dropdown": 6,
# Add light/dark mode and documentation version switcher:
"navbar_end": [
"navbar-icon-links"
],
"navbar_persistent": [],
"switcher": {
"version_match": switcher_version,
"json_url": "https://numpy.org/doc/_static/versions.json",
},
"show_version_warning_banner": True,
}
html_title = f"{project} v{version} Manual"
html_static_path = ['_static']
html_last_updated_fmt = '%b %d, %Y'
html_css_files = ["numpy.css"]
html_context = {"default_mode": "light"}
html_use_modindex = True
html_copy_source = False
html_domain_indices = False
html_file_suffix = '.html'
htmlhelp_basename = 'numpy'
if 'sphinx.ext.pngmath' in extensions:
pngmath_use_preview = True
pngmath_dvipng_args = ['-gamma', '1.5', '-D', '96', '-bg', 'Transparent']
mathjax_path = "scipy-mathjax/MathJax.js?config=scipy-mathjax"
plot_html_show_formats = False
plot_html_show_source_link = False
# sphinx-copybutton configurations
copybutton_prompt_text = r">>> |\.\.\. |\$ |In \[\d*\]: | {2,5}\.\.\.: | {5,8}: "
copybutton_prompt_is_regexp = True
# -----------------------------------------------------------------------------
# LaTeX output
# -----------------------------------------------------------------------------
# The paper size ('letter' or 'a4').
#latex_paper_size = 'letter'
# The font size ('10pt', '11pt' or '12pt').
#latex_font_size = '10pt'
# XeLaTeX for better support of unicode characters
latex_engine = 'xelatex'
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, document class [howto/manual]).
_stdauthor = 'Written by the NumPy community'
latex_documents = [
('reference/index', 'numpy-ref.tex', 'NumPy Reference',
_stdauthor, 'manual'),
('user/index', 'numpy-user.tex', 'NumPy User Guide',
_stdauthor, 'manual'),
]
# The name of an image file (relative to this directory) to place at the top of
# the title page.
#latex_logo = None
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#latex_use_parts = False
latex_elements = {
}
# Additional stuff for the LaTeX preamble.
latex_elements['preamble'] = r'''
\newfontfamily\FontForChinese{FandolSong-Regular}[Extension=.otf]
\catcode`琴\active\protected\def琴{{\FontForChinese\string琴}}
\catcode`春\active\protected\def春{{\FontForChinese\string春}}
\catcode`鈴\active\protected\def鈴{{\FontForChinese\string鈴}}
\catcode`猫\active\protected\def猫{{\FontForChinese\string猫}}
\catcode`傅\active\protected\def傅{{\FontForChinese\string傅}}
\catcode`立\active\protected\def立{{\FontForChinese\string立}}
\catcode`业\active\protected\def业{{\FontForChinese\string业}}
\catcode`(\active\protected\def({{\FontForChinese\string(}}
\catcode`)\active\protected\def){{\FontForChinese\string)}}
% In the parameters section, place a newline after the Parameters
% header. This is default with Sphinx 5.0.0+, so no need for
% the old hack then.
% Unfortunately sphinx.sty 5.0.0 did not bump its version date
% so we check rather sphinxpackagefootnote.sty (which exists
% since Sphinx 4.0.0).
\makeatletter
\@ifpackagelater{sphinxpackagefootnote}{2022/02/12}
{}% Sphinx >= 5.0.0, nothing to do
{%
\usepackage{expdlist}
\let\latexdescription=\description
\def\description{\latexdescription{}{} \breaklabel}
% but expdlist old LaTeX package requires fixes:
% 1) remove extra space
\usepackage{etoolbox}
\patchcmd\@item{{\@breaklabel} }{{\@breaklabel}}{}{}
% 2) fix bug in expdlist's way of breaking the line after long item label
\def\breaklabel{%
\def\@breaklabel{%
\leavevmode\par
% now a hack because Sphinx inserts \leavevmode after term node
\def\leavevmode{\def\leavevmode{\unhbox\voidb@x}}%
}%
}
}% Sphinx < 5.0.0 (and assumed >= 4.0.0)
\makeatother
% Make Examples/etc section headers smaller and more compact
\makeatletter
\titleformat{\paragraph}{\normalsize\py@HeaderFamily}%
{\py@TitleColor}{0em}{\py@TitleColor}{\py@NormalColor}
\titlespacing*{\paragraph}{0pt}{1ex}{0pt}
\makeatother
% Fix footer/header
\renewcommand{\chaptermark}[1]{\markboth{\MakeUppercase{\thechapter.\ #1}}{}}
\renewcommand{\sectionmark}[1]{\markright{\MakeUppercase{\thesection.\ #1}}}
'''
# Documents to append as an appendix to all manuals.
#latex_appendices = []
# If false, no module index is generated.
latex_use_modindex = False
# -----------------------------------------------------------------------------
# Texinfo output
# -----------------------------------------------------------------------------
texinfo_documents = [
("index", 'numpy', 'NumPy Documentation', _stdauthor, 'NumPy',
"NumPy: array processing for numbers, strings, records, and objects.",
'Programming',
1),
]
# -----------------------------------------------------------------------------
# Intersphinx configuration
# -----------------------------------------------------------------------------
intersphinx_mapping = {
'neps': ('https://numpy.org/neps', '../../debian/intersphinx/neps_objects.inv'),
'python': ('/usr/share/doc/python3/html/', None),
'scipy': ('/usr/share/doc/python-scipy-doc/html/', None),
'matplotlib': ('https://matplotlib.org/stable/', '../../debian/intersphinx/matplotlib_objects.inv'),
'imageio': ('/usr/share/doc/python-imageio-doc/html/', None),
'skimage': ('/usr/share/doc/python-skimage-doc/html/', None),
'pandas': ('/usr/share/doc/python-pandas-doc/html/', None),
'scipy-lecture-notes': ('https://scipy-lectures.org', '../../debian/intersphinx/scipy-lectures_objects.inv'),
'pytest': ('/usr/share/doc/python-pytest-doc/html/', None),
'numpy-tutorials': ('https://numpy.org/numpy-tutorials', '../../debian/intersphinx/numpy-tutorials_objects.inv'),
'numpydoc': ('https://numpydoc.readthedocs.io/en/latest', '../../debian/intersphinx/numpydoc_objects.inv'),
'dlpack': ('https://dmlc.github.io/dlpack/latest', '../../debian/intersphinx/dlpack_objects.inv')
}
# -----------------------------------------------------------------------------
# NumPy extensions
# -----------------------------------------------------------------------------
# If we want to do a phantom import from an XML file for all autodocs
phantom_import_file = 'dump.xml'
# Make numpydoc to generate plots for example sections
numpydoc_use_plots = True
# -----------------------------------------------------------------------------
# Autosummary
# -----------------------------------------------------------------------------
autosummary_generate = True
# -----------------------------------------------------------------------------
# Coverage checker
# -----------------------------------------------------------------------------
coverage_ignore_modules = []
coverage_ignore_functions = [
'test($|_)', '(some|all)true', 'bitwise_not', 'cumproduct', 'pkgload', 'generic\\.'
]
coverage_ignore_classes = []
coverage_c_path = []
coverage_c_regexes = {}
coverage_ignore_c_items = {}
# -----------------------------------------------------------------------------
# Plots
# -----------------------------------------------------------------------------
plot_pre_code = """
import numpy as np
np.random.seed(0)
"""
plot_include_source = True
plot_formats = [('png', 100), 'pdf']
import math
phi = (math.sqrt(5) + 1) / 2
plot_rcparams = {
'font.size': 8,
'axes.titlesize': 8,
'axes.labelsize': 8,
'xtick.labelsize': 8,
'ytick.labelsize': 8,
'legend.fontsize': 8,
'figure.figsize': (3 * phi, 3),
'figure.subplot.bottom': 0.2,
'figure.subplot.left': 0.2,
'figure.subplot.right': 0.9,
'figure.subplot.top': 0.85,
'figure.subplot.wspace': 0.4,
'text.usetex': False,
}
# -----------------------------------------------------------------------------
# Source code links
# -----------------------------------------------------------------------------
import inspect
from os.path import dirname, relpath
for name in ['sphinx.ext.linkcode', 'numpydoc.linkcode']:
try:
__import__(name)
extensions.append(name)
break
except ImportError:
pass
else:
print("NOTE: linkcode extension not found -- no links to source generated")
def _get_c_source_file(obj):
if issubclass(obj, numpy.generic):
return r"_core/src/multiarray/scalartypes.c.src"
elif obj is numpy.ndarray:
return r"_core/src/multiarray/arrayobject.c"
else:
# todo: come up with a better way to generate these
return None
def linkcode_resolve(domain, info):
"""
Determine the URL corresponding to Python object
"""
if domain != 'py':
return None
modname = info['module']
fullname = info['fullname']
submod = sys.modules.get(modname)
if submod is None:
return None
obj = submod
for part in fullname.split('.'):
try:
obj = getattr(obj, part)
except Exception:
return None
# strip decorators, which would resolve to the source of the decorator
# possibly an upstream bug in getsourcefile, bpo-1764286
try:
unwrap = inspect.unwrap
except AttributeError:
pass
else:
obj = unwrap(obj)
fn = None
lineno = None
if isinstance(obj, type):
# Make a poor effort at linking C extension types
if obj.__module__ == 'numpy':
fn = _get_c_source_file(obj)
# This can be removed when removing the decorator set_module. Fix issue #28629
if hasattr(obj, '_module_source'):
obj.__module__, obj._module_source = obj._module_source, obj.__module__
if fn is None:
try:
fn = inspect.getsourcefile(obj)
except Exception:
fn = None
if not fn:
return None
# Ignore re-exports as their source files are not within the numpy repo
module = inspect.getmodule(obj)
if module is not None and not module.__name__.startswith("numpy"):
return None
try:
source, lineno = inspect.getsourcelines(obj)
except Exception:
lineno = None
fn = relpath(fn, start=dirname(numpy.__file__))
if lineno:
linespec = "#L%d-L%d" % (lineno, lineno + len(source) - 1)
else:
linespec = ""
if isinstance(obj, type) and hasattr(obj, '_module_source'):
obj.__module__, obj._module_source = obj._module_source, obj.__module__
if 'dev' in numpy.__version__:
return f"https://github.com/numpy/numpy/blob/main/numpy/{fn}{linespec}"
else:
return "https://github.com/numpy/numpy/blob/v%s/numpy/%s%s" % (
numpy.__version__, fn, linespec)
from pygments.lexer import inherit
from pygments.lexers import CLexer
from pygments.token import Comment
class NumPyLexer(CLexer):
name = 'NUMPYLEXER'
tokens = {
'statements': [
(r'@[a-zA-Z_]*@', Comment.Preproc, 'macro'),
inherit,
],
}
# -----------------------------------------------------------------------------
# Breathe & Doxygen
# -----------------------------------------------------------------------------
breathe_projects = {'numpy': os.path.join("..", "build", "doxygen", "xml")}
breathe_default_project = "numpy"
breathe_default_members = ("members", "undoc-members", "protected-members")
# See https://github.com/breathe-doc/breathe/issues/696
nitpick_ignore = [
('c:identifier', 'FILE'),
('c:identifier', 'size_t'),
('c:identifier', 'PyHeapTypeObject'),
]
# -----------------------------------------------------------------------------
# Interactive documentation examples via JupyterLite
# -----------------------------------------------------------------------------
global_enable_try_examples = True
try_examples_global_button_text = "Try it in your browser!"
try_examples_global_warning_text = (
"NumPy's interactive examples are experimental and may not always work"
" as expected, with high load times especially on low-resource platforms,"
" and the version of NumPy might not be in sync with the one you are"
" browsing the documentation for. If you encounter any issues, please"
" report them on the"
" [NumPy issue tracker](https://github.com/numpy/numpy/issues)."
)
# Reseed numpy random generator for reproducible documentation
numpy.random.seed(42)
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