1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
|
.. automodule:: obicount
:py:mod:`obicount` specific options
-----------------------------------
.. cmdoption:: -a, --all
Prints only the sum of ``count`` attributes.
If a sequence has no `count` attribute, its default count is 1.
*Example:*
.. code-block:: bash
> obicount -a seq.fasta
For all sequence records contained in the ``seq.fasta`` file, prints only
the sum of ``count`` attributes.
.. cmdoption:: -s, --sequence
Prints only the number of sequence records.
*Example:*
.. code-block:: bash
> obicount -s seq.fasta
Prints only the number of sequence records contained in the ``seq.fasta`` file.
.. include:: ../optionsSet/inputformat.txt
.. include:: ../optionsSet/defaultoptions.txt
:py:mod:`obicount` added sequence attribute
-------------------------------------------
- :doc:`count <../attributes/count>`
|
