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.. automodule:: obitab
:py:mod:`obitab` specific options
---------------------------------
.. cmdoption:: -n <NOT AVAILABLE STRING>, --na-string=<NOT AVAILABLE STRING>
String written in the table for the not available values
(default value ``NA``).
.. cmdoption:: --output-field-separator=<STRING>
Field separator for the tabular file
(default value ``TAB``).
.. cmdoption:: -o, --output-seq
Adds an extra column at the end of the table for
the sequence itself.
.. cmdoption:: -d, --no-definition
Removes column containing the sequence definition in
the output tab file.
.. cmdoption:: -a <KEY>, --omit-attribute=<KEY>
Attributes whose key is in this list will not be printed in
the output tab file.
.. include:: ../optionsSet/inputformat.txt
.. include:: ../optionsSet/defaultoptions.txt
Example
-------
.. code-block:: bash
> obitab -d -o seq1.fasta > seq1.txt
Reformats all sequence records present in the ``seq1.fasta`` file
into a tabular file without outputing the sequence definition but
with an extra column containing the sequence itself. The result is
stored in the ``seq1.txt`` file.
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