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#cython: language_level=3
from obitools3.dms.capi.apat cimport SeqPtr
cdef class One_primer_search_result:
cdef SeqPtr _pointer
cdef int pattern_ref
cdef int hit_count
cdef inline SeqPtr pointer(self)
@staticmethod
cdef new(SeqPtr apat_seq_p, int pattern_ref, int hit_count)
cpdef first_encountered(self)
cdef class Primer_search:
cdef SeqPtr apat_seq_p
cdef list direct_primers
cdef list revcomp_primers
cpdef One_primer_search_result search_one_primer(self, bytes sequence,
int primer_pair_index, int primer_index,
bint reverse_comp=*,
bint same_sequence=*,
int pattern_ref=*,
int begin=*)
cpdef free(self)
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