1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41
|
#cython: language_level=3
from obitools3.uri.decode import open_uri
from obitools3.apps.config import logger
from obitools3.dms import DMS
from obitools3.dms.taxo.taxo cimport Taxonomy
from obitools3.apps.optiongroups import addMinimalInputOption
from obitools3.utils cimport tostr, bytes2str_object
__title__="Print a preview of a DMS, view, column...."
def addOptions(parser):
addMinimalInputOption(parser)
group = parser.add_argument_group('obi ls specific options')
group.add_argument('-l',
action="store_true", dest="ls:longformat",
default=False,
help="Detailed list in long format with all metadata.")
def run(config):
DMS.obi_atexit()
logger("info", "obi ls")
# Open the input
input = open_uri(config['obi']['inputURI'])
if input is None:
raise Exception("Could not read input")
# Print representation
if config['ls']['longformat']:
print(input[1].repr_longformat())
else:
print(repr(input[1]))
input[0].close(force=True)
|