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# Copyright (C) 2005 Michael Creel <michael.creel@uab.es>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; If not, see <http://www.gnu.org/licenses/>.
# Example likelihood function (Poisson for count data) with score
function [log_density, score] = poisson(theta, data, otherargs)
y = data(:,1);
x = data(:,2:columns(data));
lambda = exp(x*theta);
log_density = -lambda + y .* (x*theta) - lgamma(y+1);
score = diag (y - lambda) * x;
if (otherargs{1} == 1) score = "na"; endif # provide analytic score or not?
endfunction
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