1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766
|
########################################################################
##
## Copyright (C) 2008-2026 The Octave Project Developers
##
## See the file COPYRIGHT.md in the top-level directory of this
## distribution or <https://octave.org/copyright/>.
##
## This file is part of Octave.
##
## Octave is free software: you can redistribute it and/or modify it
## under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
##
## Octave is distributed in the hope that it will be useful, but
## WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with Octave; see the file COPYING. If not, see
## <https://www.gnu.org/licenses/>.
##
########################################################################
## -*- texinfo -*-
## @deftypefn {} {@var{q} =} quantile (@var{x})
## @deftypefnx {} {@var{q} =} quantile (@var{x}, @var{p})
## @deftypefnx {} {@var{q} =} quantile (@var{x}, @var{n})
## @deftypefnx {} {@var{q} =} quantile (@var{x}, @dots{}, @var{dim})
## @deftypefnx {} {@var{q} =} quantile (@var{x}, @dots{}, @var{vecdim})
## @deftypefnx {} {@var{q} =} quantile (@var{x}, @dots{}, "all")
## @deftypefnx {} {@var{q} =} quantile (@var{x}, @var{p}, @dots{}, @var{method})
## @deftypefnx {} {@var{q} =} quantile (@var{x}, @var{n}, @dots{}, @var{method})
## Compute the quantiles of the input data @var{x}.
##
## If @var{x} is a vector, then @code{quantile (@var{x})} computes the quantiles
## specified by @var{p} of the data in @var{x}.
##
## If @var{x} is a matrix, then @code{quantile (@var{x})} returns a matrix such
## that the i-th row of @var{q} contains the @var{p}(i)th quantiles of each
## column of @var{x}.
##
## If @var{x} is an array, then @code{quantile (@var{x})} computes the quantiles
## specified by @var{p} along the first non-singleton dimension of @var{x}.
##
## The data in @var{x} must be numeric and any NaN values are ignored. The
## size of @var{q} is equal to the size of @var{x} except for the operating
## dimension, which equals to the number of quantiles specified by @var{p}
## or @var{n}.
##
## @var{p} is a numeric vector specifying the percentiles to be computed, which
## correspond to the cumulative probabilities of the data . All elements of
## @var{p} must be in the range from 0 to 1. If @var{p} is unspecified, return
## the percentiles for @code{[0.00 0.25 0.50 0.75 1.00]}. Alternatively, the
## second input argument may be specified as a positive integer value @var{n},
## in which case @code{quantile} returns the quantiles for @var{n} evenly
## spaced cumulative probabilities computed as (1/(@var{n} + 1), 2/(@var{n}
## + 1), @dots{}, @var{n}/(@var{n} + 1)) for @code{@var{n} > 1}.
##
## The optional input @var{dim} specifies the dimension to operate on and must
## be a positive integer. Specifying any singleton dimension of @var{x},
## including any dimension exceeding @code{ndims (@var{x})}, will return N
## copies of @var{x} along the operating dimension, where N is the number of
## specified quantiles.
##
## Specifying multiple dimensions with input @var{vecdim}, a vector of
## non-repeating dimensions, will operate along the array slice defined by
## @var{vecdim}. If @var{vecdim} indexes all dimensions of @var{x}, then it is
## equivalent to the option @qcode{"all"}. Any dimension in @var{vecdim}
## greater than @code{ndims (@var{x})} is ignored. If all dimensions in
## @var{vecdim} are greater than @code{ndims (@var{x})}, then @code{quantile}
## will return N copies of @var{x} along the smallest dimension in
## @var{vecdim}.
##
## Specifying the dimension as @qcode{"all"} will cause @code{iqr} to operate
## on all elements of @var{x}, and is equivalent to @code{iqr (@var{x}(:))}.
##
## The fourth input argument, @var{methods}, determines the method to calculate
## the quantiles specified by @var{p} or @var{n}. The methods available to
## calculate sample quantiles are the nine methods used by R
## (@url{https://www.r-project.org/}) and can be specified by the corresponding
## integer value. The default value is @w{@var{method} = 5}.
##
## Discontinuous sample quantile methods 1, 2, and 3
##
## @enumerate 1
## @item Method 1: Inverse of empirical distribution function.
##
## @item Method 2: Similar to method 1 but with averaging at discontinuities.
##
## @item Method 3: SAS definition: nearest even order statistic.
## @end enumerate
##
## Continuous sample quantile methods 4 through 9, where
## @tex
## $p(k)$
## @end tex
## @ifnottex
## @var{p}(k)
## @end ifnottex
## is the linear
## interpolation function respecting each method's representative cdf.
##
## @enumerate 4
## @item Method 4:
## @tex
## $p(k) = k / N$.
## @end tex
## @ifnottex
## @var{p}(k) = k / N.
## @end ifnottex
## That is, linear interpolation of the empirical cdf, where @math{N} is the
## length of @var{P}.
##
## @item Method 5:
## @tex
## $p(k) = (k - 0.5) / N$.
## @end tex
## @ifnottex
## @var{p}(k) = (k - 0.5) / N.
## @end ifnottex
## That is, a piecewise linear function where the knots are the values midway
## through the steps of the empirical cdf.
##
## @item Method 6:
## @tex
## $p(k) = k / (N + 1)$.
## @end tex
## @ifnottex
## @var{p}(k) = k / (N + 1).
## @end ifnottex
##
## @item Method 7:
## @tex
## $p(k) = (k - 1) / (N - 1)$.
## @end tex
## @ifnottex
## @var{p}(k) = (k - 1) / (N - 1).
## @end ifnottex
##
## @item Method 8:
## @tex
## $p(k) = (k - 1/3) / (N + 1/3)$.
## @end tex
## @ifnottex
## @var{p}(k) = (k - 1/3) / (N + 1/3).
## @end ifnottex
## The resulting quantile estimates are approximately median-unbiased
## regardless of the distribution of @var{x}.
##
## @item Method 9:
## @tex
## $p(k) = (k - 3/8) / (N + 1/4)$.
## @end tex
## @ifnottex
## @var{p}(k) = (k - 3/8) / (N + 1/4).
## @end ifnottex
## The resulting quantile estimates are approximately unbiased for the
## expected order statistics if @var{x} is normally distributed.
## @end enumerate
##
## @nospell{Hyndman and Fan} (1996) recommend method 8. Maxima, S, and R
## (versions prior to 2.0.0) use 7 as their default. Minitab and SPSS
## use method 6. @sc{matlab} uses method 5.
##
## References:
##
## @itemize @bullet
## @item @nospell{R. A. Becker, J. M. Chambers, and A. R. Wilks},
## @cite{The New S Language}, @nospell{Wadsworth & Brooks/Cole}, 1988.
##
## @item @nospell{R. J. Hyndman, and Y. Fan}, "Sample quantiles in statistical
## packages", @cite{American Statistician}, 50, @w{pp.@: 361}--365, 1996.
##
## @item @cite{R: A Language and Environment for Statistical Computing},
## @url{https://cran.r-project.org/doc/manuals/fullrefman.pdf}.
## @end itemize
##
## Examples:
## @c Set example in small font to prevent overfull line
##
## @smallexample
## @group
## x = randi (1000, [10, 1]); # Create empirical data in range 1-1000
## q = quantile (x, [0, 1]); # Return minimum, maximum of distribution
## q = quantile (x, [0.25 0.5 0.75]); # Return quartiles of distribution
## @end group
## @end smallexample
## @seealso{prctile}
## @end deftypefn
function q = quantile (x, p = [], dim, method = 5)
if (nargin < 1)
print_usage ();
endif
if (! (isnumeric (x)))
error ("quantile: X must be a numeric array");
endif
if (isempty (p))
p = [0.00, 0.25, 0.50, 0.75, 1.00];
endif
if (! (isnumeric (p) && isvector (p)))
error ("quantile: P must be a numeric vector");
endif
if (isscalar (p) && fix (p) == p && p > 1)
p = [1:p] ./ (p + 1);
elseif (any (p < 0 | p > 1))
error (strcat ("quantile: P values must range from 0 to 1, unless", ...
" specifying N evenly spaced cumulative probabilities"));
endif
do_perm = false;
nd = ndims (x);
sz = size (x);
empty_x = isempty (x);
if (nargin < 3)
## Find the first non-singleton dimension.
(dim = find (size (x) > 1, 1)) || (dim = 1);
## Return immediately for an empty matrix.
if (empty_x)
if (nd == 2 && max (sz) <= 1)
## Return the size of vector P
sz = size (p);
else
## Reduce operating DIM to length of P
sz(dim) = numel (p);
endif
q = NaN (sz);
return;
endif
endif
if (isnumeric (dim))
## Check for DIM argument
if (isscalar (dim))
if (! (dim == fix (dim) && dim > 0))
error ("quantile: DIM must be a positive integer");
endif
## Return immediately for an empty matrix.
if (empty_x)
## Reduce operating DIM to length of P
sz(dim) = numel (p);
## Mask existing dims, new zero-dims must be 1
mask = ones (1, dim);
mask(1:nd) = 0;
sz(mask & sz == 0) = 1;
q = NaN (sz);
return;
endif
## Return numel (p) copies of X if DIM > nd
if (dim > nd)
sz = ones (1, dim);
sz(dim) = numel (p);
q = repmat (x, sz);
return;
endif
## Set the permutation vector.
perm = 1:(max (ndims (x), dim));
perm(1) = dim;
perm(dim) = 1;
do_perm = true;
## Permute dim to the 1st index.
x = permute (x, perm);
## Save the size of the permuted x N-D array.
sx = size (x);
## Reshape to a 2-D array.
x = reshape (x, sx(1), []);
## Check for proper VECDIM (more than 1 dim, no repeats)
elseif (isvector (dim) && isindex (dim) && all (diff (sort (dim))))
## Discard exceeding dims, unless all dims > nd so keep smallest
vecdim = dim(dim <= nd);
if (isempty (vecdim))
dim = min (dim);
else
dim = vecdim;
endif
## Return immediately for an empty matrix.
if (empty_x)
sz(dim(1)) = numel (p); # reduce first operating VECDIM to P
sz(dim(2:end)) = 1; # reduce other operating VECDIM to 1
## Mask existing dims, new zero-dims must be 1
mask = ones (1, max (dim));
mask(1:nd) = 0;
sz(mask & sz == 0) = 1;
q = NaN (sz);
return;
endif
## Return numel (p) copies of X if remaining DIM > nd
if (dim > nd)
sz = ones (1, dim);
sz(dim) = numel (p);
q = repmat (x, sz);
return;
endif
## Return X with X(dim(1)) expanded to P, if all DIM == 1
if (all (sz(dim) == 1))
sz = ones (1, nd);
sz(dim(1)) = numel (p); # reduce first operating VECDIM to P
sz(dim(2:end)) = 1; # reduce other operating VECDIM to 1
q = repmat (x, sz);
return;
endif
## Detect trivial case of DIM being all dimensions (same as "all").
vecdims = numel (dim);
max_dim = max (nd, max (dim));
if (vecdims == nd && max_dim == nd)
x = x(:);
sx = size (x);
dim = 1;
else
## Algorithm: Move dimensions for operation to the front, keeping the
## order of the remaining dimensions. Reshape the moved dims into a
## single dimension (row). Calculate with __quantile__ along dim1 of
## X, then reshape to correct dimensions.
dim = dim(:).'; # Force row vector
## Permutation vector with DIM at front
perm = [1:max_dim];
perm(dim) = [];
perm = [dim, perm];
do_perm = true;
## Reshape X to put dims to process at front.
x = permute (x, perm);
sx = size (x);
## Preserve trailing singletons when dim > ndims (x).
sx = [sx, ones(1, max_dim - numel (sx))];
sx = [prod(sx(1:vecdims)), ones(1, (vecdims-1)), sx((vecdims+1):end)];
## Size must always have 2 dimensions.
if (isscalar (sx))
sx = [sx, 1];
endif
## Collapse dimensions to be processsed into single column.
x = reshape (x, sx);
endif
else
error ("quantile: VECDIM must be a vector of non-repeating positive integers");
endif
elseif (strcmpi (dim, "all"))
## Return immediately for an empty matrix
if (empty_x)
## Always return a column vector.
q = NaN (numel (p), 1);
return;
endif
## "all" simplifies to collapsing all elements to single vector.
x = x(:);
sx = size (x);
dim = 1;
else
error ("quantile: DIM must be a positive integer scalar, vector, or 'all'");
endif
## Calculate the quantiles.
q = __quantile__ (x, p, method);
## Return the shape to the original N-D array.
q = reshape (q, [numel(p), sx(2:end)]);
## Permute the 1st index back to dim.
if (do_perm)
q = ipermute (q, perm);
endif
## For Matlab compatibility, return vectors with the same orientation as p
if (isvector (q) && ! isscalar (q) && ! isscalar (p))
if (isrow (p))
q = reshape (q, 1, []);
else
q = reshape (q, [], 1);
endif
endif
endfunction
%!test
%! p = 0.50;
%! q = quantile (1:4, p);
%! qa = 2.5;
%! assert (q, qa);
%! q = quantile (1:4, p, 1);
%! qa = [1, 2, 3, 4];
%! assert (q, qa);
%! q = quantile (1:4, p, 2);
%! qa = 2.5;
%! assert (q, qa);
%!test
%! p = [0.50 0.75];
%! q = quantile (1:4, p);
%! qa = [2.5 3.5];
%! assert (q, qa);
%! q = quantile (1:4, p, 1);
%! qa = [1, 2, 3, 4; 1, 2, 3, 4];
%! assert (q, qa);
%! q = quantile (1:4, p, 2);
%! qa = [2.5 3.5];
%! assert (q, qa);
%!test
%! p = 0.5;
%! x = sort (rand (11));
%! q = quantile (x, p);
%! assert (q, x(6,:));
%! x = x.';
%! q = quantile (x, p, 2);
%! assert (q, x(:,6));
%!test
%! p = [0.00, 0.25, 0.50, 0.75, 1.00];
%! x = [1; 2; 3; 4];
%! a = [1.0000 1.0000 2.0000 3.0000 4.0000
%! 1.0000 1.5000 2.5000 3.5000 4.0000
%! 1.0000 1.0000 2.0000 3.0000 4.0000
%! 1.0000 1.0000 2.0000 3.0000 4.0000
%! 1.0000 1.5000 2.5000 3.5000 4.0000
%! 1.0000 1.2500 2.5000 3.7500 4.0000
%! 1.0000 1.7500 2.5000 3.2500 4.0000
%! 1.0000 1.4167 2.5000 3.5833 4.0000
%! 1.0000 1.4375 2.5000 3.5625 4.0000];
%! for m = 1:9
%! q = quantile (x, p, 1, m);
%! assert (q, a(m,:), 0.0001);
%! endfor
%!test
%! p = [0.00, 0.25, 0.50, 0.75, 1.00];
%! x = [1; 2; 3; 4; 5];
%! a = [1.0000 2.0000 3.0000 4.0000 5.0000
%! 1.0000 2.0000 3.0000 4.0000 5.0000
%! 1.0000 1.0000 2.0000 4.0000 5.0000
%! 1.0000 1.2500 2.5000 3.7500 5.0000
%! 1.0000 1.7500 3.0000 4.2500 5.0000
%! 1.0000 1.5000 3.0000 4.5000 5.0000
%! 1.0000 2.0000 3.0000 4.0000 5.0000
%! 1.0000 1.6667 3.0000 4.3333 5.0000
%! 1.0000 1.6875 3.0000 4.3125 5.0000];
%! for m = 1:9
%! q = quantile (x, p, 1, m);
%! assert (q, a(m,:), 0.0001);
%! endfor
%!test
%! p = [0.00, 0.25, 0.50, 0.75, 1.00];
%! x = [1; 2; 5; 9];
%! a = [1.0000 1.0000 2.0000 5.0000 9.0000
%! 1.0000 1.5000 3.5000 7.0000 9.0000
%! 1.0000 1.0000 2.0000 5.0000 9.0000
%! 1.0000 1.0000 2.0000 5.0000 9.0000
%! 1.0000 1.5000 3.5000 7.0000 9.0000
%! 1.0000 1.2500 3.5000 8.0000 9.0000
%! 1.0000 1.7500 3.5000 6.0000 9.0000
%! 1.0000 1.4167 3.5000 7.3333 9.0000
%! 1.0000 1.4375 3.5000 7.2500 9.0000];
%! for m = 1:9
%! q = quantile (x, p, 1, m);
%! assert (q, a(m,:), 0.0001);
%! endfor
%!test
%! p = [0.00, 0.25, 0.50, 0.75, 1.00];
%! x = [1; 2; 5; 9; 11];
%! a = [1.0000 2.0000 5.0000 9.0000 11.0000
%! 1.0000 2.0000 5.0000 9.0000 11.0000
%! 1.0000 1.0000 2.0000 9.0000 11.0000
%! 1.0000 1.2500 3.5000 8.0000 11.0000
%! 1.0000 1.7500 5.0000 9.5000 11.0000
%! 1.0000 1.5000 5.0000 10.0000 11.0000
%! 1.0000 2.0000 5.0000 9.0000 11.0000
%! 1.0000 1.6667 5.0000 9.6667 11.0000
%! 1.0000 1.6875 5.0000 9.6250 11.0000];
%! for m = 1:9
%! q = quantile (x, p, 1, m);
%! assert (q, a(m,:), 0.0001);
%! endfor
%!test
%! p = [0.00, 0.25, 0.50, 0.75, 1.00];
%! x = [16; 11; 15; 12; 15; 8; 11; 12; 6; 10];
%! a = [6.0000 10.0000 11.0000 15.0000 16.0000
%! 6.0000 10.0000 11.5000 15.0000 16.0000
%! 6.0000 8.0000 11.0000 15.0000 16.0000
%! 6.0000 9.0000 11.0000 13.5000 16.0000
%! 6.0000 10.0000 11.5000 15.0000 16.0000
%! 6.0000 9.5000 11.5000 15.0000 16.0000
%! 6.0000 10.2500 11.5000 14.2500 16.0000
%! 6.0000 9.8333 11.5000 15.0000 16.0000
%! 6.0000 9.8750 11.5000 15.0000 16.0000];
%! for m = 1:9
%! q = quantile (x, p, 1, m);
%! assert (q, a(m,:), 0.0001);
%! endfor
%!test
%! p = [0.00, 0.25, 0.50, 0.75, 1.00];
%! x = [-0.58851; 0.40048; 0.49527; -2.551500; -0.52057; ...
%! -0.17841; 0.057322; -0.62523; 0.042906; 0.12337];
%! a = [-2.551474 -0.588505 -0.178409 0.123366 0.495271
%! -2.551474 -0.588505 -0.067751 0.123366 0.495271
%! -2.551474 -0.625231 -0.178409 0.123366 0.495271
%! -2.551474 -0.606868 -0.178409 0.090344 0.495271
%! -2.551474 -0.588505 -0.067751 0.123366 0.495271
%! -2.551474 -0.597687 -0.067751 0.192645 0.495271
%! -2.551474 -0.571522 -0.067751 0.106855 0.495271
%! -2.551474 -0.591566 -0.067751 0.146459 0.495271
%! -2.551474 -0.590801 -0.067751 0.140686 0.495271];
%! for m = 1:9
%! q = quantile (x, p, 1, m);
%! assert (q, a(m,:), 0.0001);
%! endfor
%!test
%! p = 0.5;
%! x = [0.112600, 0.114800, 0.052100, 0.236400, 0.139300
%! 0.171800, 0.727300, 0.204100, 0.453100, 0.158500
%! 0.279500, 0.797800, 0.329600, 0.556700, 0.730700
%! 0.428800, 0.875300, 0.647700, 0.628700, 0.816500
%! 0.933100, 0.931200, 0.963500, 0.779600, 0.846100];
%! tol = 0.00001;
%! x(5,5) = NaN;
%! assert (quantile (x, p, 1),
%! [0.27950, 0.79780, 0.32960, 0.55670, 0.44460], tol);
%! x(1,1) = NaN;
%! assert (quantile (x, p, 1),
%! [0.35415, 0.79780, 0.32960, 0.55670, 0.44460], tol);
%! x(3,3) = NaN;
%! assert (quantile (x, p, 1),
%! [0.35415, 0.79780, 0.42590, 0.55670, 0.44460], tol);
%!test
%! sx = [2, 3, 4];
%! x = rand (sx);
%! dim = 2;
%! p = 0.5;
%! yobs = quantile (x, p, dim);
%! yexp = median (x, dim);
%! assert (yobs, yexp);
%!assert <*45455> (quantile ([1 3 2], 0.5, 1), [1 3 2])
%!assert <*54421> (quantile ([1:10], 0.5, 1), 1:10)
%!assert <*54421> (quantile ([1:10]', 0.5, 2), [1:10]')
%!assert <*54421> (quantile ([1:10], [0.25, 0.75]), [3, 8])
%!assert <*54421> (quantile ([1:10], [0.25, 0.75]'), [3; 8])
%!assert (quantile ([1:10], 1, 3), [1:10])
## Test empty input arrays
%!assert (quantile ([], [0.2, 0.5, 0.7]), NaN (1, 3))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7]), NaN (1, 3))
%!assert (quantile ([], [0.2, 0.5, 0.7, 0.9]), NaN (1, 4))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7, 0.9]), NaN (1, 4))
%!assert (quantile ([], [0.2, 0.5, 0.7], 2), NaN (0, 3))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7], 2), NaN (1, 3))
%!assert (quantile (ones (0, 1), [0.2, 0.5, 0.7], 2), NaN (0, 3))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7], 1), NaN (3, 0))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7], 3), NaN (1, 0, 3))
%!assert (quantile (ones (1, 0, 1), [0.2, 0.5, 0.7], 3), NaN (1, 0, 3))
%!assert (quantile (ones (3, 0, 1, 2), [0.2, 0.5, 0.7]), NaN (3, 0, 1, 2))
%!assert (quantile (ones (3, 0, 1, 2), [0.2, 0.5, 0.7], 2), NaN (3, 3, 1, 2))
%!assert (quantile (ones (3, 0, 1, 2), [0.2; 0.5; 0.7]), NaN (3, 0, 1, 2))
%!assert (quantile (ones (3, 0, 1, 2), [0.2; 0.5; 0.7], 2), NaN (3, 3, 1, 2))
%!assert (quantile (ones (1, 0), [0.2; 0.5; 0.7]), NaN (3, 1))
%!assert (quantile (ones (0, 1), [0.2, 0.5, 0.7]), NaN (1, 3))
%!assert (quantile (ones (5, 0, 1, 2), [0.2, 0.5, 0.7]), NaN (3, 0, 1, 2))
%!assert (quantile (ones (5, 0), [0.2, 0.5, 0.7]), NaN (3, 0))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7], 4), NaN (1, 0, 1, 3))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7], 5), NaN (1, 0, 1, 1, 3))
%!assert (quantile (ones (5, 0, 1), [0.2, 0.5, 0.7], [4:6]), NaN (5, 0, 1, 3))
%!assert (quantile (ones (5, 0, 1), [0.2, 0.5, 0.7], [3, 4]), NaN (5, 0, 3))
%!assert (quantile (ones (5, 0, 2, 2), [0.2, 0.5, 0.7], [2, 3]), NaN (5, 3, 1, 2))
%!assert (quantile (ones (5, 0, 2, 2), [0.2, 0.5, 0.7], [1, 3]), NaN (3, 0, 1, 2))
%!assert (quantile (ones (5, 0, 2, 2), [0.2, 0.5, 0.7], 'all'), NaN (3, 1))
%!assert (quantile (ones (5, 0, 2, 2), [0.2; 0.5; 0.7], 'all'), NaN (3, 1))
%!assert (quantile (ones (0, 1), [0.2, 0.5, 0.7], 'all'), NaN (3, 1))
%!assert (quantile (ones (0, 1), [0.2; 0.5; 0.7], 'all'), NaN (3, 1))
%!assert (quantile (ones (1, 0), [0.2, 0.5, 0.7], 'all'), NaN (3, 1))
%!assert (quantile (ones (1, 0), [0.2; 0.5; 0.7], 'all'), NaN (3, 1))
## Test DIM and VECDIM with exceeding dimensions
%!assert (quantile (repmat ([1:10], 5, 1), [0.2, 0.5, 0.7], 2), ...
%! repmat ([2.5, 5.5, 7.5], 5, 1))
%!assert (quantile (repmat ([1:10], 5, 1), [0.2, 0.5, 0.7], 3), ...
%! repmat ([1:10], 5, 1, 3))
%!assert (quantile (repmat ([1:10], 5, 1), [0.2, 0.5, 0.7], 4), ...
%! repmat ([1:10], 5, 1, 1, 3))
%!assert (quantile (repmat ([1:10], 5, 1), [0.2, 0.5, 0.7], [2, 4]), ...
%! repmat ([2.5, 5.5, 7.5], 5, 1))
%!assert (quantile (repmat ([1:10], 5, 1), [0.2, 0.5, 0.7], [3, 5]), ...
%! repmat ([1:10], 5, 1, 3))
%!assert (quantile (repmat ([1:10], 5, 1), [0.2, 0.5, 0.7], [4, 6]), ...
%! repmat ([1:10], 5, 1, 1, 3))
## Test DIM and VECCDIM with dimensions of length 1
%!assert (quantile (ones (5, 1, 2, 2), [0.2, 0.5, 0.7], 2), ones (5, 3, 2, 2))
%!assert (quantile (ones (5, 1, 1, 2), [0.2, 0.5, 0.7], [2, 3]), ones (5, 3, 1, 2))
## Test direction of P vector
%!assert (quantile ([1:10], [0.2; 0.5; 0.7]), [2.5; 5.5; 7.5])
%!assert (quantile ([1:10]', [0.2; 0.5; 0.7]), [2.5; 5.5; 7.5])
%!assert (quantile ([1:10], [0.2, 0.5, 0.7]), [2.5, 5.5, 7.5])
%!assert (quantile ([1:10]', [0.2, 0.5, 0.7]), [2.5, 5.5, 7.5])
## Test N evenly spaced cummulative probabilities
%!assert (quantile ([1:10], 3), [3, 5.5, 8])
%!assert (quantile ([1:10]', 3), [3, 5.5, 8])
%!assert (quantile ([1:10], 9), [1.5, 2.5, 3.5, 4.5, 5.5, 6.5, 7.5, 8.5, 9.5])
%!assert (quantile ([1:10]', 9), [1.5, 2.5, 3.5, 4.5, 5.5, 6.5, 7.5, 8.5, 9.5])
## Test input validation
%!error <Invalid call> quantile ()
%!error <quantile: X must be a numeric array> quantile (['A'; 'B'], 10)
%!error <quantile: X must be a numeric array> quantile ([true; false], 10)
%!error <quantile: X must be a numeric array> quantile ({1, 2}, [0.2, 0.5, 0.8])
%!error <P must be a numeric vector> quantile (1:10, [true, false])
%!error <P must be a numeric vector> quantile (1:10, ones (2,2))
%!error <quantile: P values must range from 0 to 1, unless specifying N evenly spaced cumulative probabilities> ...
%! quantile (1:10, -1)
%!error <quantile: P values must range from 0 to 1, unless specifying N evenly spaced cumulative probabilities> ...
%! quantile (1:10, [0.2, 0.5, -0.8])
%!error <quantile: DIM must be a positive integer> quantile (1, 1, 1.5)
%!error <quantile: DIM must be a positive integer> quantile (1, 1, 0)
%!error <quantile: VECDIM must be a vector of non-repeating positive integers> ...
%! quantile (1, 1, [1, 2, 2])
%!error <quantile: VECDIM must be a vector of non-repeating positive integers> ...
%! quantile (1, 1, [1, 2, 0])
%!error <quantile: DIM must be a positive integer scalar, vector, or 'all'> ...
%! quantile (1, 1, "some")
%!error quantile ((1:5)', 0.5, 1, 0)
%!error quantile ((1:5)', 0.5, 1, 10)
## For the cumulative probability values in @var{p}, compute the
## quantiles, @var{q} (the inverse of the cdf), for the sample, @var{x}.
##
## The optional input, @var{method}, refers to nine methods available in R
## (https://www.r-project.org/). The default is @var{method} = 5.
## @seealso{prctile, quantile, statistics}
## Description: Quantile function of empirical samples
function inv = __quantile__ (x, p, method = 5)
if (nargin < 2)
print_usage ("quantile");
endif
if (isinteger (x) || islogical (x))
x = double (x);
endif
## set shape of quantiles to column vector.
p = p(:);
## Save length and set shape of samples.
x = sort (x, 1);
m = sum (! isnan (x));
[xr, xc] = size (x);
## Initialize output values.
inv = Inf (class (x)) * (-(p < 0) + (p > 1));
inv = repmat (inv, 1, xc);
## Do the work.
if (any (k = find ((p >= 0) & (p <= 1))))
n = length (k);
p = p(k);
## Special case of 1 row.
if (xr == 1)
inv(k,:) = repmat (x, n, 1);
return;
endif
## The column-distribution indices.
pcd = kron (ones (n, 1), xr*(0:xc-1));
mm = kron (ones (n, 1), m);
switch (method)
case {1, 2, 3}
switch (method)
case 1
p = max (ceil (kron (p, m)), 1);
inv(k,:) = x(p + pcd);
case 2
p = kron (p, m);
p_lr = max (ceil (p), 1);
p_rl = min (floor (p + 1), mm);
inv(k,:) = (x(p_lr + pcd) + x(p_rl + pcd))/2;
case 3
## Used by SAS, method PCTLDEF=2.
## http://support.sas.com/onlinedoc/913/getDoc/en/statug.hlp/stdize_sect14.htm
t = max (kron (p, m), 1);
t = roundb (t);
inv(k,:) = x(t + pcd);
endswitch
otherwise
switch (method)
case 4
p = kron (p, m);
case 5
## Used by Matlab.
p = kron (p, m) + 0.5;
case 6
## Used by Minitab and SPSS.
p = kron (p, m+1);
case 7
## Used by S and R.
p = kron (p, m-1) + 1;
case 8
## Median unbiased.
p = kron (p, m+1/3) + 1/3;
case 9
## Approximately unbiased respecting order statistics.
p = kron (p, m+0.25) + 0.375;
otherwise
error ("quantile: Unknown METHOD, '%d'", method);
endswitch
## Duplicate single values.
imm1 = (mm(1,:) == 1);
x(2,imm1) = x(1,imm1);
## Interval indices.
pi = max (min (floor (p), mm-1), 1);
pr = max (min (p - pi, 1), 0);
pi += pcd;
inv(k,:) = (1-pr) .* x(pi) + pr .* x(pi+1);
endswitch
endif
endfunction
|