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/*
Copyright (C) 1996-2015 John W. Eaton
This file is part of Octave.
Octave is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 3 of the License, or (at your
option) any later version.
Octave is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with Octave; see the file COPYING. If not, see
<http://www.gnu.org/licenses/>.
*/
// Author: Steven G. Johnson <stevenj@alum.mit.edu>
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#if defined (HAVE_HDF5)
#include <cfloat>
#include <cstring>
#include <cctype>
#include <fstream>
#include <iomanip>
#include <iostream>
#include <string>
#include <vector>
#include "byte-swap.h"
#include "data-conv.h"
#include "file-ops.h"
#include "glob-match.h"
#include "lo-mappers.h"
#include "mach-info.h"
#include "oct-env.h"
#include "oct-time.h"
#include "quit.h"
#include "str-vec.h"
#include "oct-locbuf.h"
#include "Cell.h"
#include "defun.h"
#include "error.h"
#include "gripes.h"
#include "load-save.h"
#include "oct-hdf5-id.h"
#include "oct-obj.h"
#include "oct-map.h"
#include "ov-cell.h"
#include "pager.h"
#include "pt-exp.h"
#include "sysdep.h"
#include "unwind-prot.h"
#include "utils.h"
#include "variables.h"
#include "version.h"
#include "dMatrix.h"
#include "ov-lazy-idx.h"
#include "ls-utils.h"
#include "ls-hdf5.h"
static std::string
make_valid_identifier (const std::string& nm)
{
std::string retval;
size_t nm_len = nm.length ();
if (nm_len > 0)
{
if (! isalpha (nm[0]))
retval += '_';
for (size_t i = 0; i < nm_len; i++)
{
char c = nm[i];
retval += (isalnum (c) || c == '_') ? c : '_';
}
}
return retval;
}
// Define this to 1 if/when HDF5 supports automatic conversion between
// integer and floating-point binary data:
#define HAVE_HDF5_INT2FLOAT_CONVERSIONS 0
// Given two compound types t1 and t2, determine whether they
// are compatible for reading/writing. This function only
// works for non-nested types composed of simple elements (ints, floats...),
// which is all we need it for
bool
hdf5_types_compatible (hid_t t1, hid_t t2)
{
int n;
if ((n = H5Tget_nmembers (t1)) != H5Tget_nmembers (t2))
return false;
for (int i = 0; i < n; ++i)
{
hid_t mt1 = H5Tget_member_type (t1, i);
hid_t mt2 = H5Tget_member_type (t2, i);
if (H5Tget_class (mt1) != H5Tget_class (mt2))
return false;
H5Tclose (mt2);
H5Tclose (mt1);
}
return true;
}
// Return true if loc_id has the attribute named attr_name, and false
// otherwise.
bool
hdf5_check_attr (hid_t loc_id, const char *attr_name)
{
bool retval = false;
// we have to pull some shenanigans here to make sure
// HDF5 doesn't print out all sorts of error messages if we
// call H5Aopen for a non-existing attribute
H5E_auto_t err_func;
void *err_func_data;
// turn off error reporting temporarily, but save the error
// reporting function:
#if HAVE_HDF5_18
H5Eget_auto (H5E_DEFAULT, &err_func, &err_func_data);
H5Eset_auto (H5E_DEFAULT, 0, 0);
#else
H5Eget_auto (&err_func, &err_func_data);
H5Eset_auto (0, 0);
#endif
hid_t attr_id = H5Aopen_name (loc_id, attr_name);
if (attr_id >= 0)
{
// successful
retval = true;
H5Aclose (attr_id);
}
// restore error reporting:
#if HAVE_HDF5_18
H5Eset_auto (H5E_DEFAULT, err_func, err_func_data);
#else
H5Eset_auto (err_func, err_func_data);
#endif
return retval;
}
bool
hdf5_get_scalar_attr (hid_t loc_id, hid_t type_id,
const char *attr_name, void *buf)
{
bool retval = false;
// we have to pull some shenanigans here to make sure
// HDF5 doesn't print out all sorts of error messages if we
// call H5Aopen for a non-existing attribute
H5E_auto_t err_func;
void *err_func_data;
// turn off error reporting temporarily, but save the error
// reporting function:
#if HAVE_HDF5_18
H5Eget_auto (H5E_DEFAULT, &err_func, &err_func_data);
H5Eset_auto (H5E_DEFAULT, 0, 0);
#else
H5Eget_auto (&err_func, &err_func_data);
H5Eset_auto (0, 0);
#endif
hid_t attr_id = H5Aopen_name (loc_id, attr_name);
if (attr_id >= 0)
{
hid_t space_id = H5Aget_space (attr_id);
hsize_t rank = H5Sget_simple_extent_ndims (space_id);
if (rank == 0)
retval = H5Aread (attr_id, type_id, buf) >= 0;
H5Aclose (attr_id);
}
// restore error reporting:
#if HAVE_HDF5_18
H5Eset_auto (H5E_DEFAULT, err_func, err_func_data);
#else
H5Eset_auto (err_func, err_func_data);
#endif
return retval;
}
// The following subroutines creates an HDF5 representations of the way
// we will store Octave complex types (pairs of floating-point numbers).
// NUM_TYPE is the HDF5 numeric type to use for storage (e.g.
// H5T_NATIVE_DOUBLE to save as 'double'). Note that any necessary
// conversions are handled automatically by HDF5.
hid_t
hdf5_make_complex_type (hid_t num_type)
{
hid_t type_id = H5Tcreate (H5T_COMPOUND, sizeof (double) * 2);
H5Tinsert (type_id, "real", 0 * sizeof (double), num_type);
H5Tinsert (type_id, "imag", 1 * sizeof (double), num_type);
return type_id;
}
// This function is designed to be passed to H5Giterate, which calls it
// on each data item in an HDF5 file. For the item whose name is NAME in
// the group GROUP_ID, this function sets dv->tc to an Octave representation
// of that item. (dv must be a pointer to hdf5_callback_data.) (It also
// sets the other fields of dv).
//
// It returns 1 on success (in which case H5Giterate stops and returns),
// -1 on error, and 0 to tell H5Giterate to continue on to the next item
// (e.g. if NAME was a data type we don't recognize).
herr_t
hdf5_read_next_data (hid_t group_id, const char *name, void *dv)
{
hdf5_callback_data *d = static_cast<hdf5_callback_data *> (dv);
hid_t type_id = -1;
hid_t type_class_id = -1;
hid_t data_id = -1;
hid_t subgroup_id = -1;
hid_t space_id = -1;;
H5G_stat_t info;
herr_t retval = 0;
bool ident_valid = valid_identifier (name);
std::string vname = name;
// Allow identifiers as all digits so we can load lists saved by
// earlier versions of Octave.
if (! ident_valid)
{
// fix the identifier, replacing invalid chars with underscores
vname = make_valid_identifier (vname);
// check again (in case vname was null, empty, or some such thing):
ident_valid = valid_identifier (vname);
}
H5Gget_objinfo (group_id, name, 1, &info);
if (info.type == H5G_GROUP && ident_valid)
{
#if HAVE_HDF5_18
subgroup_id = H5Gopen (group_id, name, H5P_DEFAULT);
#else
subgroup_id = H5Gopen (group_id, name);
#endif
if (subgroup_id < 0)
{
retval = subgroup_id;
goto done;
}
if (hdf5_check_attr (subgroup_id, "OCTAVE_NEW_FORMAT"))
{
#if HAVE_HDF5_18
data_id = H5Dopen (subgroup_id, "type", H5P_DEFAULT);
#else
data_id = H5Dopen (subgroup_id, "type");
#endif
if (data_id < 0)
{
retval = data_id;
goto done;
}
type_id = H5Dget_type (data_id);
type_class_id = H5Tget_class (type_id);
if (type_class_id != H5T_STRING)
goto done;
space_id = H5Dget_space (data_id);
hsize_t rank = H5Sget_simple_extent_ndims (space_id);
if (rank != 0)
goto done;
int slen = H5Tget_size (type_id);
if (slen < 0)
goto done;
OCTAVE_LOCAL_BUFFER (char, typ, slen);
// create datatype for (null-terminated) string to read into:
hid_t st_id = H5Tcopy (H5T_C_S1);
H5Tset_size (st_id, slen);
if (H5Dread (data_id, st_id, H5S_ALL, H5S_ALL, H5P_DEFAULT,
typ) < 0)
goto done;
H5Tclose (st_id);
H5Dclose (data_id);
d->tc = octave_value_typeinfo::lookup_type (typ);
retval = (d->tc.load_hdf5 (subgroup_id, "value") ? 1 : -1);
// check for OCTAVE_GLOBAL attribute:
d->global = hdf5_check_attr (subgroup_id, "OCTAVE_GLOBAL");
H5Gclose (subgroup_id);
}
else
{
// an HDF5 group is treated as an octave structure by
// default (since that preserves name information), and an
// octave list otherwise.
if (hdf5_check_attr (subgroup_id, "OCTAVE_LIST"))
d->tc = octave_value_typeinfo::lookup_type ("list");
else
d->tc = octave_value_typeinfo::lookup_type ("struct");
// check for OCTAVE_GLOBAL attribute:
d->global = hdf5_check_attr (subgroup_id, "OCTAVE_GLOBAL");
H5Gclose (subgroup_id);
retval = (d->tc.load_hdf5 (group_id, name) ? 1 : -1);
}
}
else if (info.type == H5G_DATASET && ident_valid)
{
// For backwards compatiability.
#if HAVE_HDF5_18
data_id = H5Dopen (group_id, name, H5P_DEFAULT);
#else
data_id = H5Dopen (group_id, name);
#endif
if (data_id < 0)
{
retval = data_id;
goto done;
}
type_id = H5Dget_type (data_id);
type_class_id = H5Tget_class (type_id);
if (type_class_id == H5T_FLOAT)
{
space_id = H5Dget_space (data_id);
hsize_t rank = H5Sget_simple_extent_ndims (space_id);
if (rank == 0)
d->tc = octave_value_typeinfo::lookup_type ("scalar");
else
d->tc = octave_value_typeinfo::lookup_type ("matrix");
H5Sclose (space_id);
}
else if (type_class_id == H5T_INTEGER)
{
// What integer type do we really have..
std::string int_typ;
#ifdef HAVE_H5T_GET_NATIVE_TYPE
// FIXME: test this code and activated with an autoconf
// test!! It is also incorrect for 64-bit indexing!!
switch (H5Tget_native_type (type_id, H5T_DIR_ASCEND))
{
case H5T_NATIVE_CHAR:
int_typ = "int8 ";
break;
case H5T_NATIVE_SHORT:
int_typ = "int16 ";
break;
case H5T_NATIVE_INT:
case H5T_NATIVE_LONG:
int_typ = "int32 ";
break;
case H5T_NATIVE_LLONG:
int_typ = "int64 ";
break;
case H5T_NATIVE_UCHAR:
int_typ = "uint8 ";
break;
case H5T_NATIVE_USHORT:
int_typ = "uint16 ";
break;
case H5T_NATIVE_UINT:
case H5T_NATIVE_ULONG:
int_typ = "uint32 ";
break;
case H5T_NATIVE_ULLONG:
int_typ = "uint64 ";
break;
}
#else
hid_t int_sign = H5Tget_sign (type_id);
if (int_sign == H5T_SGN_ERROR)
warning ("load: can't read '%s' (unknown datatype)", name);
else
{
if (int_sign == H5T_SGN_NONE)
int_typ.append ("u");
int_typ.append ("int");
int slen = H5Tget_size (type_id);
if (slen < 0)
warning ("load: can't read '%s' (unknown datatype)", name);
else
{
switch (slen)
{
case 1:
int_typ.append ("8 ");
break;
case 2:
int_typ.append ("16 ");
break;
case 4:
int_typ.append ("32 ");
break;
case 8:
int_typ.append ("64 ");
break;
default:
warning ("load: can't read '%s' (unknown datatype)",
name);
int_typ = "";
break;
}
}
}
#endif
if (int_typ == "")
warning ("load: can't read '%s' (unknown datatype)", name);
else
{
// Matrix or scalar?
space_id = H5Dget_space (data_id);
hsize_t rank = H5Sget_simple_extent_ndims (space_id);
if (rank == 0)
int_typ.append ("scalar");
else
int_typ.append ("matrix");
d->tc = octave_value_typeinfo::lookup_type (int_typ);
H5Sclose (space_id);
}
}
else if (type_class_id == H5T_STRING)
d->tc = octave_value_typeinfo::lookup_type ("string");
else if (type_class_id == H5T_COMPOUND)
{
hid_t complex_type = hdf5_make_complex_type (H5T_NATIVE_DOUBLE);
if (hdf5_types_compatible (type_id, complex_type))
{
// read complex matrix or scalar variable
space_id = H5Dget_space (data_id);
hsize_t rank = H5Sget_simple_extent_ndims (space_id);
if (rank == 0)
d->tc = octave_value_typeinfo::lookup_type ("complex scalar");
else
d->tc = octave_value_typeinfo::lookup_type ("complex matrix");
H5Sclose (space_id);
}
else
// Assume that if its not complex its a range. If its not
// it'll be rejected later in the range code
d->tc = octave_value_typeinfo::lookup_type ("range");
H5Tclose (complex_type);
}
else
{
warning ("load: can't read '%s' (unknown datatype)", name);
retval = 0; // unknown datatype; skip
return retval;
}
// check for OCTAVE_GLOBAL attribute:
d->global = hdf5_check_attr (data_id, "OCTAVE_GLOBAL");
H5Tclose (type_id);
H5Dclose (data_id);
retval = (d->tc.load_hdf5 (group_id, name) ? 1 : -1);
}
if (!ident_valid)
{
// should we attempt to handle invalid identifiers by converting
// bad characters to '_', say?
warning ("load: skipping invalid identifier '%s' in hdf5 file",
name);
}
done:
if (retval < 0)
error ("load: error while reading hdf5 item %s", name);
if (retval > 0)
{
// get documentation string, if any:
int comment_length = H5Gget_comment (group_id, name, 0, 0);
if (comment_length > 1)
{
OCTAVE_LOCAL_BUFFER (char, tdoc, comment_length);
H5Gget_comment (group_id, name, comment_length, tdoc);
d->doc = tdoc;
}
else if (vname != name)
{
// the name was changed; store the original name
// as the documentation string:
d->doc = name;
}
// copy name (actually, vname):
d->name = vname;
}
return retval;
}
// Read the next Octave variable from the stream IS, which must really be
// an hdf5_ifstream. Return the variable value in tc, its doc string
// in doc, and whether it is global in global. The return value is
// the name of the variable, or NULL if none were found or there was
// and error.
std::string
read_hdf5_data (std::istream& is, const std::string& /* filename */,
bool& global, octave_value& tc, std::string& doc,
const string_vector& argv, int argv_idx, int argc)
{
check_hdf5_id_type ();
std::string retval;
doc.resize (0);
hdf5_ifstream& hs = dynamic_cast<hdf5_ifstream&> (is);
hdf5_callback_data d;
herr_t H5Giterate_retval = -1;
hsize_t num_obj = 0;
#if HAVE_HDF5_18
hid_t group_id = H5Gopen (hs.file_id, "/", H5P_DEFAULT);
#else
hid_t group_id = H5Gopen (hs.file_id, "/");
#endif
H5Gget_num_objs (group_id, &num_obj);
H5Gclose (group_id);
// For large datasets and out-of-core functionality,
// check if only parts of the data is requested
bool load_named_vars = argv_idx < argc;
while (load_named_vars && hs.current_item < static_cast<int> (num_obj))
{
std::vector<char> var_name;
bool found = false;
size_t len = 0;
len = H5Gget_objname_by_idx (hs.file_id, hs.current_item, 0, 0);
var_name.resize (len+1);
H5Gget_objname_by_idx (hs.file_id, hs.current_item, &var_name[0], len+1);
for (int i = argv_idx; i < argc; i++)
{
glob_match pattern (argv[i]);
if (pattern.match (std::string (&var_name[0])))
{
found = true;
break;
}
}
if (found)
break;
hs.current_item++;
}
if (hs.current_item < static_cast<int> (num_obj))
H5Giterate_retval = H5Giterate (hs.file_id, "/", &hs.current_item,
hdf5_read_next_data, &d);
if (H5Giterate_retval > 0)
{
global = d.global;
tc = d.tc;
doc = d.doc;
}
else
{
// an error occurred (H5Giterate_retval < 0) or there are no
// more datasets print an error message if retval < 0?
// hdf5_read_next_data already printed one, probably.
}
if (! d.name.empty ())
retval = d.name;
return retval;
}
// Add an attribute named attr_name to loc_id (a simple scalar
// attribute with value 1). Return value is >= 0 on success.
herr_t
hdf5_add_attr (hid_t loc_id, const char *attr_name)
{
herr_t retval = 0;
hid_t as_id = H5Screate (H5S_SCALAR);
if (as_id >= 0)
{
#if HAVE_HDF5_18
hid_t a_id = H5Acreate (loc_id, attr_name, H5T_NATIVE_UCHAR,
as_id, H5P_DEFAULT, H5P_DEFAULT);
#else
hid_t a_id = H5Acreate (loc_id, attr_name,
H5T_NATIVE_UCHAR, as_id, H5P_DEFAULT);
#endif
if (a_id >= 0)
{
unsigned char attr_val = 1;
retval = H5Awrite (a_id, H5T_NATIVE_UCHAR, &attr_val);
H5Aclose (a_id);
}
else
retval = a_id;
H5Sclose (as_id);
}
else
retval = as_id;
return retval;
}
herr_t
hdf5_add_scalar_attr (hid_t loc_id, hid_t type_id,
const char *attr_name, void *buf)
{
herr_t retval = 0;
hid_t as_id = H5Screate (H5S_SCALAR);
if (as_id >= 0)
{
#if HAVE_HDF5_18
hid_t a_id = H5Acreate (loc_id, attr_name, type_id,
as_id, H5P_DEFAULT, H5P_DEFAULT);
#else
hid_t a_id = H5Acreate (loc_id, attr_name,
type_id, as_id, H5P_DEFAULT);
#endif
if (a_id >= 0)
{
retval = H5Awrite (a_id, type_id, buf);
H5Aclose (a_id);
}
else
retval = a_id;
H5Sclose (as_id);
}
else
retval = as_id;
return retval;
}
// Save an empty matrix, if needed. Returns
// > 0 Saved empty matrix
// = 0 Not an empty matrix; did nothing
// < 0 Error condition
int
save_hdf5_empty (hid_t loc_id, const char *name, const dim_vector d)
{
hsize_t sz = d.length ();
OCTAVE_LOCAL_BUFFER (octave_idx_type, dims, sz);
bool empty = false;
hid_t space_hid = -1;
hid_t data_hid = -1;
int retval;
for (hsize_t i = 0; i < sz; i++)
{
dims[i] = d(i);
if (dims[i] < 1)
empty = true;
}
if (!empty)
return 0;
space_hid = H5Screate_simple (1, &sz, 0);
if (space_hid < 0) return space_hid;
#if HAVE_HDF5_18
data_hid = H5Dcreate (loc_id, name, H5T_NATIVE_IDX, space_hid,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
#else
data_hid = H5Dcreate (loc_id, name, H5T_NATIVE_IDX, space_hid,
H5P_DEFAULT);
#endif
if (data_hid < 0)
{
H5Sclose (space_hid);
return data_hid;
}
retval = H5Dwrite (data_hid, H5T_NATIVE_IDX, H5S_ALL, H5S_ALL,
H5P_DEFAULT, dims) >= 0;
H5Dclose (data_hid);
H5Sclose (space_hid);
if (retval >= 0)
retval = hdf5_add_attr (loc_id, "OCTAVE_EMPTY_MATRIX");
return (retval == 0 ? 1 : retval);
}
// Load an empty matrix, if needed. Returns
// > 0 loaded empty matrix, dimensions returned
// = 0 Not an empty matrix; did nothing
// < 0 Error condition
int
load_hdf5_empty (hid_t loc_id, const char *name, dim_vector &d)
{
if (! hdf5_check_attr (loc_id, "OCTAVE_EMPTY_MATRIX"))
return 0;
hsize_t hdims, maxdims;
#if HAVE_HDF5_18
hid_t data_hid = H5Dopen (loc_id, name, H5P_DEFAULT);
#else
hid_t data_hid = H5Dopen (loc_id, name);
#endif
hid_t space_id = H5Dget_space (data_hid);
H5Sget_simple_extent_dims (space_id, &hdims, &maxdims);
int retval;
OCTAVE_LOCAL_BUFFER (octave_idx_type, dims, hdims);
retval = H5Dread (data_hid, H5T_NATIVE_IDX, H5S_ALL, H5S_ALL,
H5P_DEFAULT, dims);
if (retval >= 0)
{
d.resize (hdims);
for (hsize_t i = 0; i < hdims; i++)
d(i) = dims[i];
}
H5Sclose (space_id);
H5Dclose (data_hid);
return (retval == 0 ? hdims : retval);
}
// save_type_to_hdf5 is not currently used, since hdf5 doesn't yet support
// automatic float<->integer conversions:
#if HAVE_HDF5_INT2FLOAT_CONVERSIONS
// return the HDF5 type id corresponding to the Octave save_type
hid_t
save_type_to_hdf5 (save_type st)
{
switch (st)
{
case LS_U_CHAR:
return H5T_NATIVE_UCHAR;
case LS_U_SHORT:
return H5T_NATIVE_USHORT;
case LS_U_INT:
return H5T_NATIVE_UINT;
case LS_CHAR:
return H5T_NATIVE_CHAR;
case LS_SHORT:
return H5T_NATIVE_SHORT;
case LS_INT:
return H5T_NATIVE_INT;
case LS_FLOAT:
return H5T_NATIVE_FLOAT;
case LS_DOUBLE:
default:
return H5T_NATIVE_DOUBLE;
}
}
#endif /* HAVE_HDF5_INT2FLOAT_CONVERSIONS */
// Add the data from TC to the HDF5 location loc_id, which could
// be either a file or a group within a file. Return true if
// successful. This function calls itself recursively for lists
// (stored as HDF5 groups).
bool
add_hdf5_data (hid_t loc_id, const octave_value& tc,
const std::string& name, const std::string& doc,
bool mark_as_global, bool save_as_floats)
{
hsize_t dims[3];
hid_t type_id, space_id, data_id, data_type_id;
type_id = space_id = data_id = data_type_id = -1;
bool retval = false;
octave_value val = tc;
// FIXME: diagonal & permutation matrices currently don't know how to save
// themselves, so we convert them first to normal matrices using A = A(:,:).
// This is a temporary hack.
if (val.is_diag_matrix () || val.is_perm_matrix ()
|| val.type_id () == octave_lazy_index::static_type_id ())
val = val.full_value ();
std::string t = val.type_name ();
#if HAVE_HDF5_18
data_id = H5Gcreate (loc_id, name.c_str (), H5P_DEFAULT, H5P_DEFAULT,
H5P_DEFAULT);
#else
data_id = H5Gcreate (loc_id, name.c_str (), 0);
#endif
if (data_id < 0)
goto error_cleanup;
// attach the type of the variable
type_id = H5Tcopy (H5T_C_S1); H5Tset_size (type_id, t.length () + 1);
if (type_id < 0)
goto error_cleanup;
dims[0] = 0;
space_id = H5Screate_simple (0 , dims, 0);
if (space_id < 0)
goto error_cleanup;
#if HAVE_HDF5_18
data_type_id = H5Dcreate (data_id, "type", type_id, space_id,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
#else
data_type_id = H5Dcreate (data_id, "type", type_id, space_id, H5P_DEFAULT);
#endif
if (data_type_id < 0 || H5Dwrite (data_type_id, type_id, H5S_ALL, H5S_ALL,
H5P_DEFAULT, t.c_str ()) < 0)
goto error_cleanup;
// Now call the real function to save the variable
retval = val.save_hdf5 (data_id, "value", save_as_floats);
// attach doc string as comment:
if (retval && doc.length () > 0
&& H5Gset_comment (loc_id, name.c_str (), doc.c_str ()) < 0)
retval = false;
// if it's global, add an attribute "OCTAVE_GLOBAL" with value 1
if (retval && mark_as_global)
retval = hdf5_add_attr (data_id, "OCTAVE_GLOBAL") >= 0;
// We are saving in the new variable format, so mark it
if (retval)
retval = hdf5_add_attr (data_id, "OCTAVE_NEW_FORMAT") >= 0;
error_cleanup:
if (data_type_id >= 0)
H5Dclose (data_type_id);
if (type_id >= 0)
H5Tclose (type_id);
if (space_id >= 0)
H5Sclose (space_id);
if (data_id >= 0)
H5Gclose (data_id);
if (! retval)
error ("save: error while writing '%s' to hdf5 file", name.c_str ());
return retval;
}
// Write data from TC in HDF5 (binary) format to the stream OS,
// which must be an hdf5_ofstream, returning true on success.
bool
save_hdf5_data (std::ostream& os, const octave_value& tc,
const std::string& name, const std::string& doc,
bool mark_as_global, bool save_as_floats)
{
check_hdf5_id_type ();
hdf5_ofstream& hs = dynamic_cast<hdf5_ofstream&> (os);
return add_hdf5_data (hs.file_id, tc, name, doc,
mark_as_global, save_as_floats);
}
#endif
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