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/*
* (C) Copyright 1996-2012 ECMWF.
*
* This software is licensed under the terms of the Apache Licence Version 2.0
* which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
* In applying this licence, ECMWF does not waive the privileges and immunities
* granted to it by virtue of its status as an intergovernmental organisation nor
* does it submit to any jurisdiction.
*/
#include <algorithm>
#include <cmath>
#include <string>
#include "eckit/testing/Test.h"
#include "odc/csv/TextReader.h"
#include "odc/csv/TextReaderIterator.h"
using namespace eckit::testing;
// ------------------------------------------------------------------------------------------------------
CASE("Read columnar data from CSV") {
// n.b. have the first long string not be in the first row, which will force the mechanism
// to resize.
std::stringstream data;
data << "col1:INTEGER,col2:REAL,col3:DOUBLE,col4:STRING,col5:BITFIELD[a:1;b:2;c:5]\n";
data << "1,1.001,0,a-string,0\n";
data << "1234,0,88,b-string,2\n";
data << "-5432,-6.543210,99.999,string-c,4\n";
data << "-2147483648,6.543210,11.63e-37,testing,7\n";
data << "2147483647,NaN,Nan,12345678,8\n";
data << "0,+inf,-inf,this-is-a-longer-string,11\n";
data << "0,-inf,0,short,0\n";
odc::TextReader reader(data, ",");
odc::TextReader::iterator it = reader.begin();
std::vector<long> INTEGERS{1, 1234, -5432, -2147483648, 2147483647, 0, 0};
std::vector<float> REALS{1.001,
0.0,
-6.543210,
6.543210,
std::numeric_limits<float>::quiet_NaN(),
std::numeric_limits<float>::infinity(),
-std::numeric_limits<float>::infinity()};
std::vector<double> DOUBLES{
0, 88, 99.999, 11.63e-37, std::numeric_limits<double>::quiet_NaN(), -std::numeric_limits<double>::infinity(),
0};
std::vector<std::string> STRINGS{
"a-string", "b-string", "string-c", "testing", "12345678", "this-is-a-longer-string", "short"};
std::vector<long> BITFIELDS{0, 2, 4, 7, 8, 11, 0};
EXPECT(it->columns().size() == 5);
EXPECT(it->columns()[0]->name() == "col1");
EXPECT(it->columns()[1]->name() == "col2");
EXPECT(it->columns()[2]->name() == "col3");
EXPECT(it->columns()[3]->name() == "col4");
EXPECT(it->columns()[4]->name() == "col5");
EXPECT(it->columns()[0]->type() == odc::api::INTEGER);
EXPECT(it->columns()[1]->type() == odc::api::REAL);
EXPECT(it->columns()[2]->type() == odc::api::DOUBLE);
EXPECT(it->columns()[3]->type() == odc::api::STRING);
EXPECT(it->columns()[4]->type() == odc::api::BITFIELD);
size_t count = 0;
for (; it != reader.end(); ++it) {
++count;
// Only resize on new, longer string
EXPECT(it->isNewDataset() == (count == 6));
EXPECT(it->data(0) == INTEGERS[count - 1]);
EXPECT(it->data(1) == double(REALS[count - 1]) || (std::isnan(it->data(1)) && std::isnan(REALS[count - 1])));
EXPECT(it->data(2) == DOUBLES[count - 1] || (std::isnan(it->data(2)) && std::isnan(DOUBLES[count - 1])));
EXPECT(it->dataSizeDoubles(3) == ((count >= 6) ? 3 : 1));
EXPECT(::strncmp(STRINGS[count - 1].c_str(), (char*)&it->data(3), it->dataSizeDoubles(3) * sizeof(double)) ==
0);
EXPECT(it->data(4) == BITFIELDS[count - 1]);
for (const auto& col : it->columns()) {
EXPECT(!col->hasMissing());
}
}
EXPECT(count == 7);
}
CASE("Starting with long strings") {
// n.b. have the first long string not be in the first row, which will force the mechanism
// to resize.
std::stringstream data;
data << "col4:STRING\n";
data << "a-string-is-long\n";
data << "b-string-is-very-long-indeed-whoah\n";
odc::TextReader reader(data, ",");
odc::TextReader::iterator it = reader.begin();
std::vector<std::string> STRINGS{"a-string-is-long", "b-string-is-very-long-indeed-whoah"};
EXPECT(it->columns().size() == 1);
EXPECT(it->columns()[0]->name() == "col4");
EXPECT(it->columns()[0]->type() == odc::api::STRING);
size_t count = 0;
for (; it != reader.end(); ++it) {
++count;
// Only resize on new, longer string
EXPECT(it->isNewDataset());
EXPECT(it->dataSizeDoubles(0) == (count == 1 ? 2 : 5));
EXPECT(::strncmp(STRINGS[count - 1].c_str(), (char*)&it->data(0), it->dataSizeDoubles(0) * sizeof(double)) ==
0);
for (const auto& col : it->columns()) {
EXPECT(!col->hasMissing());
}
}
EXPECT(count == 2);
}
CASE("Test parsing bitfields") {
std::string bitfieldDefinition =
"en4_level_flag@hdr:bitfield[TempLevelReject:1;SaltLevelReject:1;LevelVertStability:1;IncreasingDepthCheck:1;"
"NotUsed1:1;NotUsed2:1;NotUsed3:1;NotUsed4:1;NotUsed5:1;TempLevelStatList:1;TempLevelArgoQC:1;"
"TempLevelOutOfRangeSetToMDI:1;TempLevelEN3List:1;TempLevelVertCheck:1;TempLevelNoBckgrnd:1;TempLevelBays:1;"
"TempLevelBaysBud:1;TempLevelBaysBudReinstate:1;TempLevelWaterfallCheck:1;NotUsed6:1;NotUsed7:1;"
"SaltLevelStatList:1;SaltLevelArgoQC:1;SaltLevelOutOfRangeSetToMDI:1;SaltLevelEN3List:1;SaltLevelVertCheck:1;"
"SaltLevelNoBckgrnd:1;SaltLevelBays:1;SaltLevelBaysBud:1;SaltLevelBaysBudReinstate:1;SaltLevelWaterfallCheck:"
"1]";
eckit::sql::BitfieldDef def(odc::TextReaderIterator::parseBitfields(bitfieldDefinition));
eckit::sql::FieldNames names(def.first);
eckit::sql::Sizes sizes(def.second);
std::vector<std::string> FIELD_NAMES{"TempLevelReject",
"SaltLevelReject",
"LevelVertStability",
"IncreasingDepthCheck",
"NotUsed1",
"NotUsed2",
"NotUsed3",
"NotUsed4",
"NotUsed5",
"TempLevelStatList",
"TempLevelArgoQC",
"TempLevelOutOfRangeSetToMDI",
"TempLevelEN3List",
"TempLevelVertCheck",
"TempLevelNoBckgrnd",
"TempLevelBays",
"TempLevelBaysBud",
"TempLevelBaysBudReinstate",
"TempLevelWaterfallCheck",
"NotUsed6",
"NotUsed7",
"SaltLevelStatList",
"SaltLevelArgoQC",
"SaltLevelOutOfRangeSetToMDI",
"SaltLevelEN3List",
"SaltLevelVertCheck",
"SaltLevelNoBckgrnd",
"SaltLevelBays",
"SaltLevelBaysBud",
"SaltLevelBaysBudReinstate",
"SaltLevelWaterfallCheck"};
ASSERT(names.size() == 31);
ASSERT(sizes.size() == 31);
EXPECT(names == FIELD_NAMES);
EXPECT(std::all_of(sizes.begin(), sizes.end(), [](int x) { return x == 1; }));
}
CASE("Test parsing bitfields - 32bit limit") {
std::string bitfieldDefinition =
"en4_level_flag@hdr:bitfield[TempLevelReject:1;SaltLevelReject:1;LevelVertStability:1;IncreasingDepthCheck:1;"
"NotUsed1:1;NotUsed2:1;NotUsed3:1;NotUsed4:1;NotUsed5:1;TempLevelStatList:1;TempLevelArgoQC:1;"
"TempLevelOutOfRangeSetToMDI:1;TempLevelEN3List:1;TempLevelVertCheck:1;TempLevelNoBckgrnd:1;TempLevelBays:1;"
"TempLevelBaysBud:1;TempLevelBaysBudReinstate:1;TempLevelWaterfallCheck:1;NotUsed6:1;NotUsed7:1;"
"SaltLevelStatList:1;SaltLevelArgoQC:1;SaltLevelOutOfRangeSetToMDI:1;SaltLevelEN3List:1;SaltLevelVertCheck:1;"
"SaltLevelNoBckgrnd:1;SaltLevelBays:1;SaltLevelBaysBud:1;SaltLevelBaysBudReinstate:1;SaltLevelWaterfallCheck:1;"
"NotUsed8:1;NotUsed9:1]";
EXPECT_THROWS_AS(odc::TextReaderIterator::parseBitfields(bitfieldDefinition), eckit::UserError);
}
// ------------------------------------------------------------------------------------------------------
int main(int argc, char* argv[]) {
return run_tests(argc, argv);
}
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