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/*
* (C) Copyright 1996-2012 ECMWF.
*
* This software is licensed under the terms of the Apache Licence Version 2.0
* which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
* In applying this licence, ECMWF does not waive the privileges and immunities
* granted to it by virtue of its status as an intergovernmental organisation nor
* does it submit to any jurisdiction.
*/
#include "eckit/testing/Test.h"
#include "eckit/io/FileHandle.h"
#include "eckit/io/MemoryHandle.h"
#include "eckit/log/Log.h"
#include "eckit/types/FixedString.h"
#include "eckit/sql/SQLOutputConfig.h"
#include "eckit/sql/SQLParser.h"
#include "eckit/sql/SQLSession.h"
#include "eckit/sql/SQLStatement.h"
#include "odc/Writer.h"
#include "odc/api/Odb.h"
#include "odc/sql/ODAOutput.h"
#include "odc/sql/TODATable.h"
#include <cstdint>
#include <iomanip>
#include <sstream>
#include <type_traits>
using namespace eckit::testing;
using eckit::Log;
// ------------------------------------------------------------------------------------------------------
template <typename T>
odc::api::ColumnType typeToName() {
ASSERT(false);
return odc::api::IGNORE;
}
template <>
odc::api::ColumnType typeToName<double>() {
return odc::api::DOUBLE;
}
template <>
odc::api::ColumnType typeToName<int64_t>() {
return odc::api::INTEGER;
}
template <>
odc::api::ColumnType typeToName<uint64_t>() {
return odc::api::BITFIELD;
}
template <>
odc::api::ColumnType typeToName<eckit::FixedString<8>>() {
return odc::api::STRING;
}
template <>
odc::api::ColumnType typeToName<eckit::FixedString<16>>() {
return odc::api::STRING;
}
template <>
odc::api::ColumnType typeToName<eckit::FixedString<32>>() {
return odc::api::STRING;
}
void quick_encode_internal(eckit::DataHandle& out, std::vector<odc::api::ColumnInfo>& columnInfo,
std::vector<odc::api::ConstStridedData>& strides) {
odc::api::encode(out, columnInfo, strides);
}
template <typename T, typename... Ts>
typename std::enable_if<!std::is_same<T, uint64_t>::value, void>::type quick_encode_internal(
eckit::DataHandle& out, std::vector<odc::api::ColumnInfo>& columnInfo,
std::vector<odc::api::ConstStridedData>& strides, const std::string& colname, const std::vector<T>& vals,
Ts&&... args) {
columnInfo.emplace_back(odc::api::ColumnInfo{colname, typeToName<T>(), sizeof(vals[0])});
strides.emplace_back(odc::api::ConstStridedData{&vals[0], vals.size(), sizeof(vals[0]), sizeof(vals[0])});
quick_encode_internal(out, columnInfo, strides, std::forward<Ts>(args)...);
}
// Bitfields need some extra info
template <typename... Ts>
void quick_encode_internal(eckit::DataHandle& out, std::vector<odc::api::ColumnInfo>& columnInfo,
std::vector<odc::api::ConstStridedData>& strides, const std::string& colname,
const std::vector<uint64_t>& vals, const std::vector<odc::api::ColumnInfo::Bit>& bits,
Ts&&... args) {
columnInfo.emplace_back(odc::api::ColumnInfo{colname, odc::api::BITFIELD, sizeof(vals[0]), bits});
strides.emplace_back(odc::api::ConstStridedData{&vals[0], vals.size(), sizeof(vals[0]), sizeof(vals[0])});
quick_encode_internal(out, columnInfo, strides, std::forward<Ts>(args)...);
}
template <typename... Ts>
void quick_encode(eckit::DataHandle& out, Ts&&... args) {
std::vector<odc::api::ColumnInfo> columnInfo;
std::vector<odc::api::ConstStridedData> strides;
quick_encode_internal(out, columnInfo, strides, std::forward<Ts>(args)...);
}
// ------------------------------------------------------------------------------------------------------
// We need to specialise the comparison for FixedString, so that we can have different sized fixed
// buffers containing the same string
template <typename T, typename S>
bool vectorEquals(const std::vector<T>& lhs, const std::vector<S>& rhs) {
return lhs == rhs;
}
template <int L1, int L2>
bool vectorEquals(const std::vector<eckit::FixedString<L1>>& lhs, const std::vector<eckit::FixedString<L2>>& rhs) {
if (lhs.size() != rhs.size())
return false;
for (size_t i = 0; i < lhs.size(); ++i) {
if (lhs[i].asString() != rhs[i].asString())
return false;
}
return true;
}
template <typename... Ts>
void decode_and_test_internal(eckit::DataHandle& in, std::vector<std::string>& columnNames,
std::vector<odc::api::StridedData>& strides) {
odc::api::Decoder decoder(columnNames, strides);
in.openForRead();
eckit::AutoClose closer(in);
// n.b. we don't use an aggregated reader, as we may well be able to extract the specified
// columns, even if the overall structure cannot be aggregated.
odc::api::Reader reader(in);
size_t nrows = 0;
while (nrows < strides[0].nelem()) {
odc::api::Frame frame = reader.next();
EXPECT(frame);
size_t frameRows = frame.rowCount();
odc::api::Decoder&& subDecoder = decoder.slice(nrows, frameRows);
subDecoder.decode(frame);
nrows += frameRows;
}
// We have consumed all the data
EXPECT(!reader.next());
}
template <typename T, typename... Ts>
void decode_and_test_internal(eckit::DataHandle& in, std::vector<std::string>& columnNames,
std::vector<odc::api::StridedData>& strides, const std::string& colname,
const std::vector<T>& correctVals, Ts&&... args) {
std::vector<T> decodeBuffer(correctVals.size());
ASSERT(decodeBuffer.size() == correctVals.size());
columnNames.push_back(colname);
strides.emplace_back(&decodeBuffer[0], decodeBuffer.size(), sizeof(decodeBuffer[0]), sizeof(decodeBuffer[0]));
decode_and_test_internal(in, columnNames, strides, std::forward<Ts>(args)...);
if (!vectorEquals(decodeBuffer, correctVals)) {
Log::warning() << "Buffers mismatched for column " << colname << std::endl;
ASSERT(decodeBuffer.size() == correctVals.size());
for (size_t i = 0; i < decodeBuffer.size(); ++i) {
bool match = (decodeBuffer[i] == correctVals[i]);
Log::warning() << (match ? " " : " *** ") << std::setw(15) << std::right << correctVals[i]
<< (match ? " == " : " != ") << std::setw(15) << std::left << decodeBuffer[i]
<< (match ? " " : " *** ") << std::endl;
}
}
EXPECT(vectorEquals(decodeBuffer, correctVals));
}
template <typename... Ts>
void decode_and_test(eckit::DataHandle& in, Ts&&... args) {
odc::api::Settings::treatIntegersAsDoubles(false);
std::vector<std::string> columnNames;
std::vector<odc::api::StridedData> strides;
decode_and_test_internal(in, columnNames, strides, std::forward<Ts>(args)...);
}
// ------------------------------------------------------------------------------------------------------
class DHOutputConfig : public eckit::sql::SQLOutputConfig {
eckit::DataHandle& dh_;
public:
DHOutputConfig(eckit::DataHandle& dh) : eckit::sql::SQLOutputConfig(), dh_(dh) {}
eckit::sql::SQLOutput* buildOutput(const eckit::PathName& path) const override {
return new odc::sql::ODAOutput<odc::Writer<>>(new odc::Writer<>(dh_));
}
};
void oda_select_filter(const std::string& sql, eckit::DataHandle& dh_in, eckit::DataHandle& dh_out) {
std::unique_ptr<eckit::sql::SQLOutputConfig> output_config(new DHOutputConfig(dh_out));
eckit::sql::SQLSession session{std::move(output_config)};
dh_in.openForRead();
eckit::AutoClose closer(dh_in);
eckit::sql::SQLDatabase& db(session.currentDatabase());
db.addImplicitTable(new odc::sql::ODATable(db, dh_in));
;
eckit::sql::SQLParser parser;
parser.parseString(session, sql);
session.statement().execute();
}
// ------------------------------------------------------------------------------------------------------
CASE("short and then longer strings") {
double dmiss = odc::api::Settings::doubleMissingValue();
int64_t imiss = odc::api::Settings::integerMissingValue();
std::vector<double> doubleVals{111.1, 222.2, dmiss, 333.3};
std::vector<int64_t> intVals{1, imiss, 2, 3};
std::vector<eckit::FixedString<8>> stringVals1{"a-string", "bbbb", "", "zzzzzzzz"};
std::vector<eckit::FixedString<16>> stringVals2{"a-stringa-string", "bbbbaaacccppp", "", "zzzzzzzz"};
// Construct the source odb
eckit::MemoryHandle source_odb;
{
source_odb.openForWrite(0);
eckit::AutoClose closer(source_odb);
odc::api::Settings::treatIntegersAsDoubles(false);
quick_encode(source_odb, "doublecol", doubleVals, "stringcol", stringVals1, "intcolumn", intVals);
quick_encode(source_odb, "doublecol", doubleVals, "stringcol", stringVals2, "intcolumn", intVals);
quick_encode(source_odb, "doublecol", doubleVals, "stringcol", stringVals1, "intcolumn", intVals);
EXPECT(source_odb.position() == eckit::Offset(1289));
}
EXPECT(source_odb.size() == eckit::Length(1289));
eckit::MemoryHandle output_odb;
std::string select_string = "select *";
bool filtered = false;
{
SECTION("Select Class (integer internals)") {
odc::api::Settings::treatIntegersAsDoubles(false);
::odc::api::filter(select_string, source_odb, output_odb);
filtered = true;
}
SECTION("Select Class (double internals)") {
odc::api::Settings::treatIntegersAsDoubles(true);
::odc::api::filter(select_string, source_odb, output_odb);
filtered = true;
}
SECTION("ODAOutput (integer internals)") {
odc::api::Settings::treatIntegersAsDoubles(false);
oda_select_filter(select_string, source_odb, output_odb);
filtered = true;
}
SECTION("ODAOutput (double internals)") {
odc::api::Settings::treatIntegersAsDoubles(true);
oda_select_filter(select_string, source_odb, output_odb);
filtered = true;
}
}
// Read back from the source ODB, and check that the contents are sane
if (filtered) {
std::vector<double> doubleCorrect;
std::vector<int64_t> intCorrect;
for (int i = 0; i < 3; i++) {
doubleCorrect.insert(doubleCorrect.end(), doubleVals.begin(), doubleVals.end());
intCorrect.insert(intCorrect.end(), intVals.begin(), intVals.end());
}
std::vector<eckit::FixedString<16>> stringCorrect;
stringCorrect.insert(stringCorrect.end(), stringVals1.begin(), stringVals1.end());
stringCorrect.insert(stringCorrect.end(), stringVals2.begin(), stringVals2.end());
stringCorrect.insert(stringCorrect.end(), stringVals1.begin(), stringVals1.end());
decode_and_test(output_odb, "doublecol", doubleCorrect, "stringcol", stringCorrect, "intcolumn", intCorrect);
}
}
CASE("Extraction of bitfield values") {
int64_t imiss = odc::api::Settings::integerMissingValue();
uint64_t uimiss = static_cast<uint64_t>(odc::api::Settings::integerMissingValue());
std::vector<odc::api::ColumnInfo::Bit> bits1{{"bit1", 1, 0}, {"bit2", 2, 1}, {"bit3", 1, 3}};
std::vector<odc::api::ColumnInfo::Bit> bits2{{"bit4", 4, 0}, {"bit5", 2, 4}, {"bit6", 1, 6}};
std::vector<uint64_t> bf1Vals{0, 5, uimiss, 15};
std::vector<uint64_t> bf2Vals{127, uimiss, 42, 0};
std::vector<int64_t> bit1Vals{0, 1, imiss, 1};
std::vector<int64_t> bit2Vals{0, 2, imiss, 3};
std::vector<int64_t> bit3Vals{0, 0, imiss, 1};
std::vector<int64_t> bit4Vals{15, imiss, 10, 0};
std::vector<int64_t> bit5Vals{3, imiss, 2, 0};
std::vector<int64_t> bit6Vals{1, imiss, 0, 0};
// Construct the source odb
static int cnt = 0;
eckit::MemoryHandle source_odb;
{
source_odb.openForWrite(0);
eckit::AutoClose closer(source_odb);
odc::api::Settings::treatIntegersAsDoubles(false);
quick_encode(source_odb, "bitfield1", bf1Vals, bits1, "bitfield2@table", bf2Vals, bits2);
}
// Select a selection of bits, both with and without the entire column
/// @note - it would be really nice to test the SQL layer using treatIntegersAsDoubles(false). Unfortunately, it
/// doesn't work, and can't cleanly work. eckit has to be agnostic to the odc interface, and it just
/// passes values through (whether doubles, or integers punned into doubles). But to do bitfield
/// extraction/manipulation, it really needs to know what form they are. This is hard coded to involve
/// casting around doubles, which is really yucky. Bleurgh.
/// TODO: Make the eckit layer use only proper integers internally...
eckit::MemoryHandle output_odb;
std::string select_string =
"select bitfield1.bit1, bitfield1.bit3, bitfield1.bit2, bitfield1, bitfield2.bit5, bitfield2.bit4, "
"bitfield2.bit6";
bool filtered = false;
{
#if 0
SECTION("Select Class (integer internals)") {
odc::api::Settings::treatIntegersAsDoubles(false);
EXPECT_THROWS_AS(::odc::api::filter(select_string, source_odb, output_odb), eckit::SeriousBug);
}
#endif
SECTION("Select Class (double internals)") {
odc::api::Settings::treatIntegersAsDoubles(true);
::odc::api::filter(select_string, source_odb, output_odb);
filtered = true;
}
#if 0
SECTION( "ODAOutput (integer internals)") {
odc::api::Settings::treatIntegersAsDoubles(false);
EXPECT_THROWS_AS(oda_select_filter(select_string, source_odb, output_odb), eckit::SeriousBug);
}
#endif
SECTION("ODAOutput (double internals)") {
odc::api::Settings::treatIntegersAsDoubles(true);
oda_select_filter(select_string, source_odb, output_odb);
filtered = true;
}
}
// Read back from the source ODB, and check that the contents are sane
if (filtered) {
decode_and_test(output_odb, "bitfield1.bit1", bit1Vals, "bitfield1.bit3", bit3Vals, "bitfield1.bit2", bit2Vals,
"bitfield1", bf1Vals, "bitfield2.bit5", bit5Vals, "bitfield2.bit4", bit4Vals, "bitfield2.bit6",
bit6Vals);
}
// Check if expansion of elements works, both with and without the table name as part of column identifier
select_string = "select bitfield1.*, bitfield2.*@table";
filtered = false;
{
#if 0
SECTION("Select Class (integer internals)") {
odc::api::Settings::treatIntegersAsDoubles(false);
EXPECT_THROWS_AS(::odc::api::filter(select_string, source_odb, output_odb), eckit::SeriousBug);
}
#endif
SECTION("Select Class (double internals)") {
odc::api::Settings::treatIntegersAsDoubles(true);
::odc::api::filter(select_string, source_odb, output_odb);
filtered = true;
}
#if 0
SECTION( "ODAOutput (integer internals)") {
odc::api::Settings::treatIntegersAsDoubles(false);
EXPECT_THROWS_AS(oda_select_filter(select_string, source_odb, output_odb), eckit::SeriousBug);
}
#endif
SECTION("ODAOutput (double internals)") {
odc::api::Settings::treatIntegersAsDoubles(true);
oda_select_filter(select_string, source_odb, output_odb);
filtered = true;
}
}
// Read back from the source ODB, and check that the contents are sane
if (filtered) {
decode_and_test(output_odb, "bitfield1.bit1", bit1Vals, "bitfield1.bit3", bit3Vals, "bitfield1.bit2", bit2Vals,
"bitfield2.bit5", bit5Vals, "bitfield2.bit4", bit4Vals, "bitfield2.bit6", bit6Vals);
}
}
// ------------------------------------------------------------------------------------------------------
int main(int argc, char* argv[]) {
return run_tests(argc, argv);
}
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