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# Current workflows add the component name to the hdf group as
# an attribute. For older files, the following dict allows us
# to work out the component name from the group name.
LEGACY_COMPONENT_NAMES = {'Alignment': 'alignment',
'Basecall_1D': 'basecall_1d',
'OnlineBasecall': 'basecall_1d',
'Basecall_2D': 'basecall_2d',
'Calibration_Strand': 'calibration_strand',
'EventDetection': 'event_detection',
'Segmentation': 'segmentation',
'Hairpin_Split': 'segmentation',
'Segment_Linear': 'segmentation',
'Validation': 'segmentation',
'AlignToRef': 'align_to_ref',
'Barcoding': 'barcoding',
'Classification': 'classification',
'Evaluation': 'evaluation',
'Multiple_Alignment': 'multiple_alignment',
'Squiggle_Map': 'squiggle_map',
'Sam_Segmentor': 'sam_segmentor',
'arma': 'arma',
'Basic_component': 'basic_component',
'RawGenomeCorrected':'raw_genome_corrected' # default name from tombo resquiggle command
}
supported_modes = ('r', 'r+', 'w', 'w-', 'x', 'a')
mode_docstring = """Supported file modes:
r Readonly, file must exist (default)
r+ Read/write, file must exist
w Create file, truncate if exists
w- or x Create file, fail if exists
a Read/write if exists, create otherwise""" # Taken from h5py
HARDLINK_GROUPS = ("context_tags", "tracking_id")
OPTIONAL_READ_GROUPS = {'Analyses'}
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