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import os
import re
from setuptools import setup, find_packages
__pkg_name__ = 'ont_fast5_api'
def get_version():
init_file = os.path.join(__pkg_name__, '__init__.py')
with open(init_file, 'r') as init_fh:
verstrline = init_fh.read()
vsre = r"^__version__ = ['\"]([^'\"]*)['\"]"
mo = re.search(vsre, verstrline, re.M)
if mo:
return mo.group(1)
else:
raise RuntimeError("Unable to find version string in '{}'".format(init_file))
with open('README.rst') as readme:
documentation = readme.read()
installation_requirements = []
if 'IGNORE_INCLUDES' not in os.environ:
installation_requirements = ['h5py>=3',
'numpy>=1.16',
'packaging',
'progressbar>=2.3.1',
]
setup(name=__pkg_name__.replace("_", "-"),
author='Oxford Nanopore Technologies, Limited',
description='Oxford Nanopore Technologies fast5 API software',
license='MPL 2.0',
long_description=documentation,
version=get_version(),
url='https://github.com/nanoporetech/{}'.format(__pkg_name__),
install_requires=installation_requirements,
packages=find_packages(),
package_data={__pkg_name__: ['vbz_plugin/*.so', 'vbz_plugin/*.dylib', 'vbz_plugin/*.dll']},
python_requires='>=3.7',
entry_points={'console_scripts': [
"multi_to_single_fast5={}.conversion_tools.multi_to_single_fast5:main".format(__pkg_name__),
"single_to_multi_fast5={}.conversion_tools.single_to_multi_fast5:main".format(__pkg_name__),
"fast5_subset={}.conversion_tools.fast5_subset:main".format(__pkg_name__),
"compress_fast5={}.conversion_tools.compress_fast5:main".format(__pkg_name__),
"check_compression={}.conversion_tools.check_file_compression:main".format(__pkg_name__),
"demux_fast5={}.conversion_tools.demux_fast5:main".format(__pkg_name__),
]},
classifiers=[
'Development Status :: 5 - Production/Stable',
'Environment :: Console',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)',
'Natural Language :: English',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX :: Linux',
'Operating System :: MacOS',
'Programming Language :: Python :: 3 :: Only',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
keywords='fast5 nanopore')
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