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<div class="title">bond.h File Reference</div> </div>
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<div class="textblock"><code>#include <openbabel/babelconfig.h></code><br/>
<code>#include <<a class="el" href="base_8h_source.shtml">openbabel/base.h</a>></code><br/>
<code>#include <<a class="el" href="atom_8h_source.shtml">openbabel/atom.h</a>></code><br/>
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This graph shows which files directly or indirectly include this file:</div>
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<area shape="rect" id="node3" href="mol_8h.shtml" title="Handle molecules. Declarations of OBMol, OBAtom, OBBond, OBResidue. (the main header for Open Babel)..." alt="" coords="1995,83,2054,112"/><area shape="rect" id="node15" href="builder_8cpp.shtml" title="Handle OBBuilder class." alt="" coords="133,237,226,267"/><area shape="rect" id="node23" href="forcefield_8cpp.shtml" title="Handle OBForceField class." alt="" coords="417,315,529,344"/><area shape="rect" id="node68" href="bond_8cpp.shtml" title="Handle OBBond class." alt="" coords="4669,160,4751,189"/><area shape="rect" id="node120" href="residue_8cpp.shtml" title="Handle macromolecule residues." alt="" coords="2129,83,2227,112"/><area shape="rect" id="node5" href="alias_8h.shtml" title="OBGenericData class to for atom alias data (e.g., in 2D drawing programs for "COOH")" alt="" coords="4533,160,4594,189"/><area shape="rect" id="node7" href="generic_8cpp.shtml" title="Handle OBGenericData classes. 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Implementation of OBMol." alt="" coords="250,237,325,267"/><area shape="rect" id="node19" href="conformersearch_8h.shtml" title="Conformer searching using genetic algorithm." alt="" coords="399,237,546,267"/><area shape="rect" id="node21" href="forcefield_8h.shtml" title="Handle forcefields." alt="" coords="621,237,717,267"/><area shape="rect" id="node25" href="grid_8h.shtml" title="Handle grids of values." alt="" coords="749,160,807,189"/><area shape="rect" id="node28" href="grid_8cpp.shtml" title="Handle grids of values." alt="" coords="741,237,815,267"/><area shape="rect" id="node30" href="griddata_8cpp.shtml" title="OBGenericData class to connect numeric grids (e.g., orbitals, electrostatic potential) to molecules..." alt="" coords="839,237,943,267"/><area shape="rect" id="node32" href="groupcontrib_8h.shtml" title="Handle group contribution algorithms." alt="" coords="967,237,1085,267"/><area shape="rect" id="node34" href="isomorphism_8h.shtml" title="OBIsomorphismMapper class for finding isomorphisms." alt="" coords="1101,160,1218,189"/><area shape="rect" id="node36" href="align_8h.shtml" title="Perform a least-squares alignment of two molecules or two vectors of vector3 objects." alt="" coords="1242,237,1306,267"/><area shape="rect" id="node38" href="obmolecformat_8h.shtml" title="Subclass of OBFormat for conversion of OBMol." alt="" coords="1293,160,1429,189"/><area shape="rect" id="node40" href="xml_8h.shtml" title="Declaration of XMLConversion, declaration and definition of XMLBaseFormat and XMLMoleculeFormat." alt="" coords="1385,237,1443,267"/><area shape="rect" id="node42" href="optransform_8h.shtml" title="Operations to change molecules using a datafile of chemical transformations OBChemTsfm." alt="" coords="1503,160,1618,189"/><area shape="rect" id="node44" href="parsmart_8h.shtml" title="Daylight SMARTS parser." alt="" coords="933,160,1026,189"/><area shape="rect" id="node47" href="parsmart_8cpp.shtml" title="Implementation of Daylight SMARTS parser." alt="" coords="1109,237,1218,267"/><area shape="rect" id="node49" href="pointgroup_8h.shtml" title="Brute-force point group detection." alt="" coords="1642,160,1746,189"/><area shape="rect" id="node51" href="pointgroup_8cpp.shtml" title="Brute-force point group detection." alt="" coords="1678,237,1798,267"/><area shape="rect" id="node53" href="query_8h.shtml" title="OBQuery, OBQueryAtom & OBQueryBond classes." alt="" coords="1821,160,1890,189"/><area shape="rect" id="node55" href="reaction_8h.shtml" title="Handle chemical reactions (i.e., lists of reagents and products)." alt="" coords="1914,160,2005,189"/><area shape="rect" id="node57" href="rotamer_8h.shtml" title="Handle rotamer list data." alt="" coords="407,160,495,189"/><area shape="rect" id="node63" href="spectrophore_8h.shtml" title="Class to compute Spectrophores&tm;." alt="" coords="2029,160,2151,189"/><area shape="rect" id="node70" href="bondtyper_8cpp.shtml" title="Bond typer to perceive connectivity and bond orders/types." alt="" coords="2175,160,2293,189"/><area shape="rect" id="node73" href="canon_8cpp.shtml" title="Canonical numbering of SMILES, molecules and fragments." alt="" coords="2317,160,2407,189"/><area shape="rect" id="node75" href="chains_8cpp.shtml" title="Parse for macromolecule chains and residues." alt="" coords="2431,160,2522,189"/><area shape="rect" id="node77" href="chargemodel_8cpp.shtml" title="Base class for molecular partial charge models." alt="" coords="2546,160,2682,189"/><area shape="rect" id="node79" href="chiral_8cpp.shtml" title="Detect chiral atoms and molecules." alt="" coords="2706,160,2791,189"/><area shape="rect" id="node81" href="data_8cpp.shtml" title="Global data and resource file parsers." alt="" coords="2815,160,2895,189"/><area shape="rect" id="node85" href="graphsym_8cpp.shtml" title="Handle and perceive graph symmtery for canonical numbering." alt="" coords="2919,160,3034,189"/><area shape="rect" id="node89" href="kekulize_8cpp.shtml" title="Alternate algorithm to kekulize a molecule (OBMol::NewPerceiveKekuleBonds())." alt="" coords="3058,160,3162,189"/><area shape="rect" id="node91" href="mcdlutil_8cpp.shtml" title="2D molecule coordinate generation." alt="" coords="3186,160,3287,189"/><area shape="rect" id="node94" href="molchrg_8cpp.shtml" title="Assign Gasteiger partial charges." alt="" coords="3311,160,3413,189"/><area shape="rect" id="node96" href="obiter_8cpp.shtml" title="STL-style iterators for Open Babel." alt="" coords="3437,160,3525,189"/><area shape="rect" id="node98" href="obutil_8cpp.shtml" title="Various utility methods." alt="" coords="3549,160,3634,189"/><area shape="rect" id="node101" href="patty_8cpp.shtml" title="Programmable atom typer." alt="" coords="3658,160,3743,189"/><area shape="rect" id="node103" href="phmodel_8cpp.shtml" title="Read pH rules and assign charges." alt="" coords="3767,160,3874,189"/><area shape="rect" id="node106" href="ring_8cpp.shtml" title="Deal with rings, find smallest set of smallest rings (SSSR)." alt="" coords="3898,160,3973,189"/><area shape="rect" id="node108" href="rotor_8cpp.shtml" title="Rotate dihedral angles according to rotor rules." alt="" coords="3997,160,4079,189"/><area shape="rect" id="node110" href="transform_8cpp.shtml" title="Perform command-line requested transformations for OBMol and SMARTS filtering." alt="" coords="4103,160,4218,189"/><area shape="rect" id="node112" href="typer_8cpp.shtml" title="Open Babel atom and aromaticity typer." alt="" coords="4242,160,4327,189"/><area shape="rect" id="node115" href="RDKitConv_8h.shtml" title="Allow conversion from OBMol to RDKit RWMol." alt="" coords="4351,160,4458,189"/></map>
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<p><a href="bond_8h_source.shtml">Go to the source code of this file.</a></p>
<table class="memberdecls">
<tr><td colspan="2"><h2><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBBond.shtml">OBBond</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Bond class. <a href="classOpenBabel_1_1OBBond.shtml#details">More...</a><br/></td></tr>
<tr><td colspan="2"><h2><a name="namespaces"></a>
Namespaces</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenBabel.shtml">OpenBabel</a></td></tr>
<tr><td colspan="2"><h2><a name="define-members"></a>
Defines</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a90183171d38e32f07e97bffb7836f9fd">OB_AROMATIC_BOND</a>   (1<<1)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a71faadca5c5e100b081f5a563c22e9ee">OB_WEDGE_BOND</a>   (1<<2)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a14b10c08a25058d1d4a98f8573195119">OB_HASH_BOND</a>   (1<<3)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a2f74970f7126e2bc1e9a4e1d8ed1af26">OB_RING_BOND</a>   (1<<4)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a4acf405087f46d03ebc4581cbce02f3b">OB_TORUP_BOND</a>   (1<<5)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a7c5124279ed6a19b93840ab3038ef2c0">OB_TORDOWN_BOND</a>   (1<<6)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a2cbf156fa54b94fb630c4915ab06cbb1">OB_KSINGLE_BOND</a>   (1<<7)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#af2291cb768c88e059cb8ee24d3f66f64">OB_KDOUBLE_BOND</a>   (1<<8)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#ae702c1e19159f86ccd298f273ac94cd6">OB_KTRIPLE_BOND</a>   (1<<9)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a19b6306ab83f788b1fb60f8816b07e9c">OB_CLOSURE_BOND</a>   (1<<10)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a40ac5b89beb0ea8297e93ee26e7eaf7b">OB_WEDGE_OR_HASH_BOND</a>   (1<<11)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="bond_8h.shtml#a7d2254db1e5e6904e5490bfc80a281ea">OB_CIS_OR_TRANS_BOND</a>   (1<<12)</td></tr>
<tr><td colspan="2"><h2><a name="typedef-members"></a>
Typedefs</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">typedef OBBond </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenBabel.shtml#ad30fc0fda0a0c8a6f7d22b8202af0dce">OBEdgeBase</a></td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>Handle bonds. </p>
</div><hr/><h2>Define Documentation</h2>
<a class="anchor" id="a90183171d38e32f07e97bffb7836f9fd"></a><!-- doxytag: member="bond.h::OB_AROMATIC_BOND" ref="a90183171d38e32f07e97bffb7836f9fd" args="" -->
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<td class="memname">#define OB_AROMATIC_BOND   (1<<1)</td>
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<p>An aromatic bond (regardless of bond order) </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#a4ef863ca7ed29e266960966a66dc8fb8">OBBond::IsAromatic()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a66926118e966d8cdb17a6ae23f2e89f4">OBBond::IsDouble()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#aa7c514e18d5bbe2873dc223a02df526e">OBBond::IsSingle()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#ae763d876fdca6bb00dd7d97574c9c1d0">OBBond::IsTriple()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a3d29498c15007d9b6729e26784f23a5b">OBBond::SetAromatic()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a2fcf3bf429f36281a43c879e40e75f34">OBBond::UnsetAromatic()</a>.</p>
</div>
</div>
<a class="anchor" id="a71faadca5c5e100b081f5a563c22e9ee"></a><!-- doxytag: member="bond.h::OB_WEDGE_BOND" ref="a71faadca5c5e100b081f5a563c22e9ee" args="" -->
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<td class="memname">#define OB_WEDGE_BOND   (1<<2)</td>
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<p>A solid black wedge in 2D representations -- i.e., "up" from the 2D plane. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBMol.shtml#ad3bab31bf64ff6cb18f6ee259b3b8c11">OBMol::AddHydrogens()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a70910881ff95404e96c9b40d33e0db76">OBBond::IsWedge()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a8425a34105ee2f2e152da12ebca9960e">OBBond::UnsetWedge()</a>.</p>
</div>
</div>
<a class="anchor" id="a14b10c08a25058d1d4a98f8573195119"></a><!-- doxytag: member="bond.h::OB_HASH_BOND" ref="a14b10c08a25058d1d4a98f8573195119" args="" -->
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<td class="memname">#define OB_HASH_BOND   (1<<3)</td>
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<div class="memdoc">
<p>A dashed "hash" bond in 2D representations -- i.e., "down" from the 2D plane. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBMol.shtml#ad3bab31bf64ff6cb18f6ee259b3b8c11">OBMol::AddHydrogens()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#ab5e8e371f621ba037c843f6da7fe6bdb">OBBond::IsHash()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a934251078b7907fd8cd8573c40fdea58">OBBond::UnsetHash()</a>.</p>
</div>
</div>
<a class="anchor" id="a2f74970f7126e2bc1e9a4e1d8ed1af26"></a><!-- doxytag: member="bond.h::OB_RING_BOND" ref="a2f74970f7126e2bc1e9a4e1d8ed1af26" args="" -->
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<td class="memname">#define OB_RING_BOND   (1<<4)</td>
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<p>A bond in a ring. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#aa17842bd610dc8b2ede2fe324738fe5b">OBBond::IsInRing()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#aacde511d3c9a744b44c88958bb86eb68">OBBond::SetInRing()</a>.</p>
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<a class="anchor" id="a4acf405087f46d03ebc4581cbce02f3b"></a><!-- doxytag: member="bond.h::OB_TORUP_BOND" ref="a4acf405087f46d03ebc4581cbce02f3b" args="" -->
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<td class="memname">#define OB_TORUP_BOND   (1<<5)</td>
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<div class="memdoc">
<p>The "upper" bond in a double bond cis/trans isomer (i.e., "\" in SMILES) <-- this was wrong (/), obsolete anyway. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#a1733c541422f1bec76b19733d5f6f046">OBBond::IsUp()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a7690859a81831984dbc0fa73313d44b3">OBBond::SetDown()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a1b06560e0e01a806b92c2386220d0b57">OBBond::SetUp()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a88d9f308b5a9d49e98da1c6bd195358f">OBBond::UnsetUp()</a>.</p>
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<a class="anchor" id="a7c5124279ed6a19b93840ab3038ef2c0"></a><!-- doxytag: member="bond.h::OB_TORDOWN_BOND" ref="a7c5124279ed6a19b93840ab3038ef2c0" args="" -->
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<td class="memname">#define OB_TORDOWN_BOND   (1<<6)</td>
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<p>The "down" bond in a double bond cis/trans isomer (i.e., "/" in SMILES) <-- same. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#a4ff4d4e51ec0a91f7b8174265de188e7">OBBond::IsDown()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a7690859a81831984dbc0fa73313d44b3">OBBond::SetDown()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a1b06560e0e01a806b92c2386220d0b57">OBBond::SetUp()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a561d657e1cc83679879b2b8f662b9205">OBBond::UnsetDown()</a>.</p>
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<a class="anchor" id="a2cbf156fa54b94fb630c4915ab06cbb1"></a><!-- doxytag: member="bond.h::OB_KSINGLE_BOND" ref="a2cbf156fa54b94fb630c4915ab06cbb1" args="" -->
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<td class="memname">#define OB_KSINGLE_BOND   (1<<7)</td>
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<p>A Kekule single bond. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#a3dcf63c2cdd597361fe1f140501fb4e7">OBBond::IsKSingle()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#afb89a19ab65bff6626af0eccfb83af07">OBBond::SetBondOrder()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a2372682111abb0a7d49ba2f6caa7f51f">OBBond::SetKDouble()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#acb95632fbaba13a5aa138725a20f2c0b">OBBond::SetKSingle()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a068e086977f8e15b07d3c3d32f622ead">OBBond::SetKTriple()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a512e7b122631a29f1ef8c679704632cd">OBBond::UnsetKekule()</a>.</p>
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<a class="anchor" id="af2291cb768c88e059cb8ee24d3f66f64"></a><!-- doxytag: member="bond.h::OB_KDOUBLE_BOND" ref="af2291cb768c88e059cb8ee24d3f66f64" args="" -->
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<td class="memname">#define OB_KDOUBLE_BOND   (1<<8)</td>
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<p>A Kekule double bond. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#a1293d36d6ef65f89892ed57092aeb157">OBBond::IsKDouble()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#afb89a19ab65bff6626af0eccfb83af07">OBBond::SetBondOrder()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a2372682111abb0a7d49ba2f6caa7f51f">OBBond::SetKDouble()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#acb95632fbaba13a5aa138725a20f2c0b">OBBond::SetKSingle()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a068e086977f8e15b07d3c3d32f622ead">OBBond::SetKTriple()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a512e7b122631a29f1ef8c679704632cd">OBBond::UnsetKekule()</a>.</p>
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<a class="anchor" id="ae702c1e19159f86ccd298f273ac94cd6"></a><!-- doxytag: member="bond.h::OB_KTRIPLE_BOND" ref="ae702c1e19159f86ccd298f273ac94cd6" args="" -->
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<td class="memname">#define OB_KTRIPLE_BOND   (1<<9)</td>
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<p>A Kekule triple bond. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#ad2ccb49198384c9d22b47ac7d0c4de90">OBBond::IsKTriple()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#afb89a19ab65bff6626af0eccfb83af07">OBBond::SetBondOrder()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a2372682111abb0a7d49ba2f6caa7f51f">OBBond::SetKDouble()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#acb95632fbaba13a5aa138725a20f2c0b">OBBond::SetKSingle()</a>, <a class="el" href="classOpenBabel_1_1OBBond.shtml#a068e086977f8e15b07d3c3d32f622ead">OBBond::SetKTriple()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#a512e7b122631a29f1ef8c679704632cd">OBBond::UnsetKekule()</a>.</p>
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<a class="anchor" id="a19b6306ab83f788b1fb60f8816b07e9c"></a><!-- doxytag: member="bond.h::OB_CLOSURE_BOND" ref="a19b6306ab83f788b1fb60f8816b07e9c" args="" -->
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<td class="memname">#define OB_CLOSURE_BOND   (1<<10)</td>
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<p>A bond which "closes" a ring when walking the molecular graph. </p>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBBond.shtml#ab91f9d866c216bcb3ffc5aa0774b5177">OBBond::IsClosure()</a>, and <a class="el" href="classOpenBabel_1_1OBBond.shtml#ab499793fc98aadbaa192756b8327016d">OBBond::SetClosure()</a>.</p>
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<a class="anchor" id="a40ac5b89beb0ea8297e93ee26e7eaf7b"></a><!-- doxytag: member="bond.h::OB_WEDGE_OR_HASH_BOND" ref="a40ac5b89beb0ea8297e93ee26e7eaf7b" args="" -->
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<td class="memname">#define OB_WEDGE_OR_HASH_BOND   (1<<11)</td>
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<a class="anchor" id="a7d2254db1e5e6904e5490bfc80a281ea"></a><!-- doxytag: member="bond.h::OB_CIS_OR_TRANS_BOND" ref="a7d2254db1e5e6904e5490bfc80a281ea" args="" -->
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<td class="memname">#define OB_CIS_OR_TRANS_BOND   (1<<12)</td>
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