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<div class="title">OBChainsParser Class Reference</div> </div>
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<!-- doxytag: class="OpenBabel::OBChainsParser" -->
<p><code>#include <<a class="el" href="chains_8h_source.shtml">openbabel/chains.h</a>></code></p>
<p><a href="classOpenBabel_1_1OBChainsParser-members.shtml">List of all members.</a></p>
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<tr><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBChainsParser.shtml#aa593ab79033f0bec4605419515d00393">OBChainsParser</a> (void)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBChainsParser.shtml#ac717b59426373eedc1ebb4442b3d7b3e">~OBChainsParser</a> (void)</td></tr>
<tr><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBChainsParser.shtml#ab4077f1ebf77386df177be76a63b6b10">PerceiveChains</a> (<a class="el" href="classOpenBabel_1_1OBMol.shtml">OBMol</a> &mol, bool nukeSingleResidue=false)</td></tr>
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<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>Perceives peptide or nucleotide chains and residues in an <a class="el" href="classOpenBabel_1_1OBMol.shtml" title="Molecule Class.">OBMol</a>. </p>
<p>Perceive peptide or nucleotide chains and residues from atom connectivity. Based on original RasMol code by Roger Sayle and modified by Joe Corkery. For more on Roger's original talk, see: <a href="http://www.daylight.com/meetings/mug96/sayle/sayle.html">http://www.daylight.com/meetings/mug96/sayle/sayle.html</a> </p>
</div><hr/><h2>Constructor & Destructor Documentation</h2>
<a class="anchor" id="aa593ab79033f0bec4605419515d00393"></a><!-- doxytag: member="OpenBabel::OBChainsParser::OBChainsParser" ref="aa593ab79033f0bec4605419515d00393" args="(void)" -->
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<a class="anchor" id="ac717b59426373eedc1ebb4442b3d7b3e"></a><!-- doxytag: member="OpenBabel::OBChainsParser::~OBChainsParser" ref="ac717b59426373eedc1ebb4442b3d7b3e" args="(void)" -->
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<td class="memname">~<a class="el" href="classOpenBabel_1_1OBChainsParser.shtml">OBChainsParser</a> </td>
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<td class="paramtype">void </td>
<td class="paramname"></td><td>)</td>
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<hr/><h2>Member Function Documentation</h2>
<a class="anchor" id="ab4077f1ebf77386df177be76a63b6b10"></a><!-- doxytag: member="OpenBabel::OBChainsParser::PerceiveChains" ref="ab4077f1ebf77386df177be76a63b6b10" args="(OBMol &mol, bool nukeSingleResidue=false)" -->
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<td class="memname">bool PerceiveChains </td>
<td>(</td>
<td class="paramtype"><a class="el" href="classOpenBabel_1_1OBMol.shtml">OBMol</a> & </td>
<td class="paramname"><em>mol</em>, </td>
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<td class="paramkey"></td>
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<td class="paramtype">bool </td>
<td class="paramname"><em>nukeSingleResidue</em> = <code>false</code> </td>
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<p>Perceive macromolecular (peptide and nucleotide) residues and chains </p>
<dl><dt><b>Parameters:</b></dt><dd>
<table class="params">
<tr><td class="paramname">mol</td><td>The molecule to parse and update </td></tr>
<tr><td class="paramname">nukeSingleResidue</td><td>If only one residue is found, clear information default = false -- single residue files should still be recognized. </td></tr>
</table>
</dd>
</dl>
<p>Referenced by <a class="el" href="classOpenBabel_1_1OBAtom.shtml#afac526c6de01759b568caddae4c4f2c3">OBAtom::GetResidue()</a>.</p>
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<hr/>The documentation for this class was generated from the following files:<ul>
<li><a class="el" href="chains_8h_source.shtml">chains.h</a></li>
<li><a class="el" href="chains_8cpp.shtml">chains.cpp</a></li>
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