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<div class="textblock">Here is a list of all files with brief descriptions:</div><table>
  <tr><td class="indexkey"><a class="el" href="alias_8cpp.shtml">alias.cpp</a></td><td class="indexvalue">OBGenericData class to for atom alias data (e.g., in 2D drawing programs for "COOH") </td></tr>
  <tr><td class="indexkey"><a class="el" href="alias_8h.shtml">alias.h</a> <a href="alias_8h_source.shtml">[code]</a></td><td class="indexvalue">OBGenericData class to for atom alias data (e.g., in 2D drawing programs for "COOH") </td></tr>
  <tr><td class="indexkey"><a class="el" href="align_8cpp.shtml">align.cpp</a></td><td class="indexvalue">Handle 3D coordinates </td></tr>
  <tr><td class="indexkey"><a class="el" href="align_8h.shtml">align.h</a> <a href="align_8h_source.shtml">[code]</a></td><td class="indexvalue">Perform a least-squares alignment of two molecules or two vectors of vector3 objects </td></tr>
  <tr><td class="indexkey"><a class="el" href="atom_8cpp.shtml">atom.cpp</a></td><td class="indexvalue">Handle OBAtom class </td></tr>
  <tr><td class="indexkey"><a class="el" href="atom_8h.shtml">atom.h</a> <a href="atom_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle atoms </td></tr>
  <tr><td class="indexkey"><a class="el" href="atomclass_8h.shtml">atomclass.h</a> <a href="atomclass_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle atom classes in reaction SMILES/SMIRKS </td></tr>
  <tr><td class="indexkey"><a class="el" href="base_8cpp.shtml">base.cpp</a></td><td class="indexvalue">Implementation of base classes </td></tr>
  <tr><td class="indexkey"><a class="el" href="base_8h.shtml">base.h</a> <a href="base_8h_source.shtml">[code]</a></td><td class="indexvalue">Base classes to build a graph </td></tr>
  <tr><td class="indexkey"><a class="el" href="bitvec_8cpp.shtml">bitvec.cpp</a></td><td class="indexvalue">Fast and efficient bitstring class </td></tr>
  <tr><td class="indexkey"><a class="el" href="bitvec_8h.shtml">bitvec.h</a> <a href="bitvec_8h_source.shtml">[code]</a></td><td class="indexvalue">Fast and efficient bitstring class </td></tr>
  <tr><td class="indexkey"><a class="el" href="bond_8cpp.shtml">bond.cpp</a></td><td class="indexvalue">Handle OBBond class </td></tr>
  <tr><td class="indexkey"><a class="el" href="bond_8h.shtml">bond.h</a> <a href="bond_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle bonds </td></tr>
  <tr><td class="indexkey"><a class="el" href="bondtyper_8cpp.shtml">bondtyper.cpp</a></td><td class="indexvalue">Bond typer to perceive connectivity and bond orders/types </td></tr>
  <tr><td class="indexkey"><a class="el" href="bondtyper_8h.shtml">bondtyper.h</a> <a href="bondtyper_8h_source.shtml">[code]</a></td><td class="indexvalue">Bond typer to perceive connectivity and bond orders/types </td></tr>
  <tr><td class="indexkey"><a class="el" href="builder_8cpp.shtml">builder.cpp</a></td><td class="indexvalue">Handle OBBuilder class </td></tr>
  <tr><td class="indexkey"><a class="el" href="builder_8h.shtml">builder.h</a> <a href="builder_8h_source.shtml">[code]</a></td><td class="indexvalue">Class to build 3D structures </td></tr>
  <tr><td class="indexkey"><a class="el" href="cairopainter_8cpp.shtml">cairopainter.cpp</a></td><td class="indexvalue"></td></tr>
  <tr><td class="indexkey"><a class="el" href="cairopainter_8h.shtml">cairopainter.h</a> <a href="cairopainter_8h_source.shtml">[code]</a></td><td class="indexvalue"></td></tr>
  <tr><td class="indexkey"><a class="el" href="canon_8cpp.shtml">canon.cpp</a></td><td class="indexvalue">Canonical numbering of SMILES, molecules and fragments </td></tr>
  <tr><td class="indexkey"><a class="el" href="canon_8h.shtml">canon.h</a> <a href="canon_8h_source.shtml">[code]</a></td><td class="indexvalue">Canonical labeling </td></tr>
  <tr><td class="indexkey"><a class="el" href="chains_8cpp.shtml">chains.cpp</a></td><td class="indexvalue">Parse for macromolecule chains and residues </td></tr>
  <tr><td class="indexkey"><a class="el" href="chains_8h.shtml">chains.h</a> <a href="chains_8h_source.shtml">[code]</a></td><td class="indexvalue">Parse for macromolecule chains and residues </td></tr>
  <tr><td class="indexkey"><a class="el" href="chargemodel_8cpp.shtml">chargemodel.cpp</a></td><td class="indexvalue">Base class for molecular partial charge models </td></tr>
  <tr><td class="indexkey"><a class="el" href="chargemodel_8h.shtml">chargemodel.h</a> <a href="chargemodel_8h_source.shtml">[code]</a></td><td class="indexvalue">Base class for molecular partial charge models </td></tr>
  <tr><td class="indexkey"><a class="el" href="chiral_8cpp.shtml">chiral.cpp</a></td><td class="indexvalue">Detect chiral atoms and molecules </td></tr>
  <tr><td class="indexkey"><a class="el" href="chiral_8h.shtml">chiral.h</a> <a href="chiral_8h_source.shtml">[code]</a></td><td class="indexvalue">Detect chiral atoms and molecules </td></tr>
  <tr><td class="indexkey"><a class="el" href="cistrans_8h.shtml">cistrans.h</a> <a href="cistrans_8h_source.shtml">[code]</a></td><td class="indexvalue">Store and convert cis/trans double-bond stereochemistry </td></tr>
  <tr><td class="indexkey"><a class="el" href="conformersearch_8cpp.shtml">conformersearch.cpp</a></td><td class="indexvalue">Conformer searching using genetic algorithm </td></tr>
  <tr><td class="indexkey"><a class="el" href="conformersearch_8h.shtml">conformersearch.h</a> <a href="conformersearch_8h_source.shtml">[code]</a></td><td class="indexvalue">Conformer searching using genetic algorithm </td></tr>
  <tr><td class="indexkey"><a class="el" href="data_8cpp.shtml">data.cpp</a></td><td class="indexvalue">Global data and resource file parsers </td></tr>
  <tr><td class="indexkey"><a class="el" href="data_8h.shtml">data.h</a> <a href="data_8h_source.shtml">[code]</a></td><td class="indexvalue">Global data and resource file parsers </td></tr>
  <tr><td class="indexkey"><a class="el" href="depict_8cpp.shtml">depict.cpp</a></td><td class="indexvalue">2D depiction of molecules using OBPainter </td></tr>
  <tr><td class="indexkey"><a class="el" href="depict_8h.shtml">depict.h</a> <a href="depict_8h_source.shtml">[code]</a></td><td class="indexvalue">2D depiction of molecules using OBPainter </td></tr>
  <tr><td class="indexkey"><a class="el" href="descriptor_8cpp.shtml">descriptor.cpp</a></td><td class="indexvalue">Base class for molecular descriptors </td></tr>
  <tr><td class="indexkey"><a class="el" href="descriptor_8h.shtml">descriptor.h</a> <a href="descriptor_8h_source.shtml">[code]</a></td><td class="indexvalue">Base class for molecular descriptors </td></tr>
  <tr><td class="indexkey"><a class="el" href="dlhandler_8h.shtml">dlhandler.h</a> <a href="dlhandler_8h_source.shtml">[code]</a></td><td class="indexvalue">Dynamic loader for file format modules </td></tr>
  <tr><td class="indexkey"><a class="el" href="dlhandler__unix_8cpp.shtml">dlhandler_unix.cpp</a></td><td class="indexvalue">Dynamic loader for UNIX (handles file format shared obj.) </td></tr>
  <tr><td class="indexkey"><a class="el" href="dlhandler__win32_8cpp.shtml">dlhandler_win32.cpp</a></td><td class="indexvalue">Dynamic loader for Win32 (handles file format DDLs) </td></tr>
  <tr><td class="indexkey"><a class="el" href="doxygen__pages_8cpp.shtml">doxygen_pages.cpp</a></td><td class="indexvalue">Additional doxygen ocumentation </td></tr>
  <tr><td class="indexkey"><a class="el" href="erf_8h.shtml">erf.h</a> <a href="erf_8h_source.shtml">[code]</a></td><td class="indexvalue">Error function </td></tr>
  <tr><td class="indexkey"><a class="el" href="fingerprint_8cpp.shtml">fingerprint.cpp</a></td><td class="indexvalue">Definitions for OBFingerprint base class and fastsearch classes </td></tr>
  <tr><td class="indexkey"><a class="el" href="fingerprint_8h.shtml">fingerprint.h</a> <a href="fingerprint_8h_source.shtml">[code]</a></td><td class="indexvalue">Declaration of OBFingerprint base class and fastsearch classes </td></tr>
  <tr><td class="indexkey"><a class="el" href="forcefield_8cpp.shtml">forcefield.cpp</a></td><td class="indexvalue">Handle OBForceField class </td></tr>
  <tr><td class="indexkey"><a class="el" href="forcefield_8h.shtml">forcefield.h</a> <a href="forcefield_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle forcefields </td></tr>
  <tr><td class="indexkey"><a class="el" href="format_8cpp.shtml">format.cpp</a></td><td class="indexvalue">Base class OBFormat for file formats </td></tr>
  <tr><td class="indexkey"><a class="el" href="format_8h.shtml">format.h</a> <a href="format_8h_source.shtml">[code]</a></td><td class="indexvalue">Declarations for OBFormat </td></tr>
  <tr><td class="indexkey"><a class="el" href="generic_8cpp.shtml">generic.cpp</a></td><td class="indexvalue">Handle OBGenericData classes. Custom data for atoms, bonds, etc </td></tr>
  <tr><td class="indexkey"><a class="el" href="generic_8h.shtml">generic.h</a> <a href="generic_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle generic data classes. Custom data for atoms, bonds, etc </td></tr>
  <tr><td class="indexkey"><a class="el" href="graphsym_8cpp.shtml">graphsym.cpp</a></td><td class="indexvalue">Handle and perceive graph symmtery for canonical numbering </td></tr>
  <tr><td class="indexkey"><a class="el" href="graphsym_8h.shtml">graphsym.h</a> <a href="graphsym_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle and perceive graph symmtery for canonical numbering </td></tr>
  <tr><td class="indexkey"><a class="el" href="grid_8cpp.shtml">grid.cpp</a></td><td class="indexvalue">Handle grids of values </td></tr>
  <tr><td class="indexkey"><a class="el" href="grid_8h.shtml">grid.h</a> <a href="grid_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle grids of values </td></tr>
  <tr><td class="indexkey"><a class="el" href="griddata_8cpp.shtml">griddata.cpp</a></td><td class="indexvalue">OBGenericData class to connect numeric grids (e.g., orbitals, electrostatic potential) to molecules </td></tr>
  <tr><td class="indexkey"><a class="el" href="griddata_8h.shtml">griddata.h</a> <a href="griddata_8h_source.shtml">[code]</a></td><td class="indexvalue">OBGenericData class to connect numeric grids (e.g., orbitals, electrostatic potential) to molecules </td></tr>
  <tr><td class="indexkey"><a class="el" href="groupcontrib_8h.shtml">groupcontrib.h</a> <a href="groupcontrib_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle group contribution algorithms </td></tr>
  <tr><td class="indexkey"><a class="el" href="internalcoord_8h.shtml">internalcoord.h</a> <a href="internalcoord_8h_source.shtml">[code]</a></td><td class="indexvalue">Declaration of OBInternalCoord class, conversion between Cartesian and Z-matrix form </td></tr>
  <tr><td class="indexkey"><a class="el" href="isomorphism_8cpp.shtml">isomorphism.cpp</a></td><td class="indexvalue">OBIsomorphismMapper class for finding isomorphisms </td></tr>
  <tr><td class="indexkey"><a class="el" href="isomorphism_8h.shtml">isomorphism.h</a> <a href="isomorphism_8h_source.shtml">[code]</a></td><td class="indexvalue">OBIsomorphismMapper class for finding isomorphisms </td></tr>
  <tr><td class="indexkey"><a class="el" href="kekulize_8cpp.shtml">kekulize.cpp</a></td><td class="indexvalue">Alternate algorithm to kekulize a molecule (OBMol::NewPerceiveKekuleBonds()) </td></tr>
  <tr><td class="indexkey"><a class="el" href="kinetics_8h.shtml">kinetics.h</a> <a href="kinetics_8h_source.shtml">[code]</a></td><td class="indexvalue">OBRateData and OBNasaThermoData classes </td></tr>
  <tr><td class="indexkey"><a class="el" href="lineend_8h.shtml">lineend.h</a> <a href="lineend_8h_source.shtml">[code]</a></td><td class="indexvalue">Translate line endings automatically (UNIX, Classic Mac, DOS) </td></tr>
  <tr><td class="indexkey"><a class="el" href="locale_8cpp.shtml">locale.cpp</a></td><td class="indexvalue">Handle internal numeric locale issues -- parse data in "C" </td></tr>
  <tr><td class="indexkey"><a class="el" href="locale_8h.shtml">locale.h</a> <a href="locale_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle internal numeric locale issues -- parse data in "C" </td></tr>
  <tr><td class="indexkey"><a class="el" href="matrix_8cpp.shtml">matrix.cpp</a></td><td class="indexvalue">Operations on arbitrary-sized matrix </td></tr>
  <tr><td class="indexkey"><a class="el" href="matrix_8h.shtml">matrix.h</a> <a href="matrix_8h_source.shtml">[code]</a></td><td class="indexvalue">Operations on arbitrary-sized matrix </td></tr>
  <tr><td class="indexkey"><a class="el" href="matrix3x3_8cpp.shtml">matrix3x3.cpp</a></td><td class="indexvalue">Handle 3D rotation matrix </td></tr>
  <tr><td class="indexkey"><a class="el" href="matrix3x3_8h.shtml">matrix3x3.h</a> <a href="matrix3x3_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle 3D Rotation matrix </td></tr>
  <tr><td class="indexkey"><a class="el" href="mcdlutil_8cpp.shtml">mcdlutil.cpp</a></td><td class="indexvalue">2D molecule coordinate generation </td></tr>
  <tr><td class="indexkey"><a class="el" href="mcdlutil_8h.shtml">mcdlutil.h</a> <a href="mcdlutil_8h_source.shtml">[code]</a></td><td class="indexvalue">2D molecule coordinate generation </td></tr>
  <tr><td class="indexkey"><a class="el" href="modules_8h.shtml">modules.h</a> <a href="modules_8h_source.shtml">[code]</a></td><td class="indexvalue">Doxygen modules declaration </td></tr>
  <tr><td class="indexkey"><a class="el" href="mol_8cpp.shtml">mol.cpp</a></td><td class="indexvalue">Handle molecules. Implementation of OBMol </td></tr>
  <tr><td class="indexkey"><a class="el" href="mol_8h.shtml">mol.h</a> <a href="mol_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle molecules. Declarations of OBMol, OBAtom, OBBond, OBResidue. (the main header for Open Babel) </td></tr>
  <tr><td class="indexkey"><a class="el" href="molchrg_8cpp.shtml">molchrg.cpp</a></td><td class="indexvalue">Assign Gasteiger partial charges </td></tr>
  <tr><td class="indexkey"><a class="el" href="molchrg_8h.shtml">molchrg.h</a> <a href="molchrg_8h_source.shtml">[code]</a></td><td class="indexvalue">Assign Gasteiger partial charges </td></tr>
  <tr><td class="indexkey"><a class="el" href="obconversion_8cpp.shtml">obconversion.cpp</a></td><td class="indexvalue">Implementation of OBFormat and OBConversion classes </td></tr>
  <tr><td class="indexkey"><a class="el" href="obconversion_8h.shtml">obconversion.h</a> <a href="obconversion_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle file conversions. Declaration of OBFormat, OBConversion </td></tr>
  <tr><td class="indexkey"><a class="el" href="oberror_8cpp.shtml">oberror.cpp</a></td><td class="indexvalue">Handle error messages, warnings, notices, etc. Implements OBMessageHandler class </td></tr>
  <tr><td class="indexkey"><a class="el" href="oberror_8h.shtml">oberror.h</a> <a href="oberror_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle error messages, warnings, notices, etc </td></tr>
  <tr><td class="indexkey"><a class="el" href="obiter_8cpp.shtml">obiter.cpp</a></td><td class="indexvalue">STL-style iterators for Open Babel </td></tr>
  <tr><td class="indexkey"><a class="el" href="obiter_8h.shtml">obiter.h</a> <a href="obiter_8h_source.shtml">[code]</a></td><td class="indexvalue">STL-style iterators for Open Babel </td></tr>
  <tr><td class="indexkey"><a class="el" href="obmolecformat_8cpp.shtml">obmolecformat.cpp</a></td><td class="indexvalue">Subclass of OBFormat for conversion of OBMol </td></tr>
  <tr><td class="indexkey"><a class="el" href="obmolecformat_8h.shtml">obmolecformat.h</a> <a href="obmolecformat_8h_source.shtml">[code]</a></td><td class="indexvalue">Subclass of OBFormat for conversion of OBMol </td></tr>
  <tr><td class="indexkey"><a class="el" href="obutil_8cpp.shtml">obutil.cpp</a></td><td class="indexvalue">Various utility methods </td></tr>
  <tr><td class="indexkey"><a class="el" href="obutil_8h.shtml">obutil.h</a> <a href="obutil_8h_source.shtml">[code]</a></td><td class="indexvalue">Various utility methods </td></tr>
  <tr><td class="indexkey"><a class="el" href="op_8cpp.shtml">op.cpp</a></td><td class="indexvalue">Base plugin class for operations on molecules </td></tr>
  <tr><td class="indexkey"><a class="el" href="op_8h.shtml">op.h</a> <a href="op_8h_source.shtml">[code]</a></td><td class="indexvalue">Base plugin class for operations on molecules </td></tr>
  <tr><td class="indexkey"><a class="el" href="optransform_8h.shtml">optransform.h</a> <a href="optransform_8h_source.shtml">[code]</a></td><td class="indexvalue">Operations to change molecules using a datafile of chemical transformations OBChemTsfm </td></tr>
  <tr><td class="indexkey"><a class="el" href="painter_8h.shtml">painter.h</a> <a href="painter_8h_source.shtml">[code]</a></td><td class="indexvalue">Base class for graphical 2D depiction classes (e.g., "paint" to SVG) </td></tr>
  <tr><td class="indexkey"><a class="el" href="parsmart_8cpp.shtml">parsmart.cpp</a></td><td class="indexvalue">Implementation of Daylight SMARTS parser </td></tr>
  <tr><td class="indexkey"><a class="el" href="parsmart_8h.shtml">parsmart.h</a> <a href="parsmart_8h_source.shtml">[code]</a></td><td class="indexvalue">Daylight SMARTS parser </td></tr>
  <tr><td class="indexkey"><a class="el" href="patty_8cpp.shtml">patty.cpp</a></td><td class="indexvalue">Programmable atom typer </td></tr>
  <tr><td class="indexkey"><a class="el" href="patty_8h.shtml">patty.h</a> <a href="patty_8h_source.shtml">[code]</a></td><td class="indexvalue">Programmable atom typer. (abbreviated P.At.Ty.) </td></tr>
  <tr><td class="indexkey"><a class="el" href="phmodel_8cpp.shtml">phmodel.cpp</a></td><td class="indexvalue">Read pH rules and assign charges </td></tr>
  <tr><td class="indexkey"><a class="el" href="phmodel_8h.shtml">phmodel.h</a> <a href="phmodel_8h_source.shtml">[code]</a></td><td class="indexvalue">Read pH rules and assign charges </td></tr>
  <tr><td class="indexkey"><a class="el" href="plugin_8cpp.shtml">plugin.cpp</a></td><td class="indexvalue">Simplify 'plugin' classes to be discovered and/or loaded at runtime </td></tr>
  <tr><td class="indexkey"><a class="el" href="plugin_8h.shtml">plugin.h</a> <a href="plugin_8h_source.shtml">[code]</a></td><td class="indexvalue">Simplify 'plugin' classes to be discovered and/or loaded at runtime </td></tr>
  <tr><td class="indexkey"><a class="el" href="pointgroup_8cpp.shtml">pointgroup.cpp</a></td><td class="indexvalue">Brute-force point group detection </td></tr>
  <tr><td class="indexkey"><a class="el" href="pointgroup_8h.shtml">pointgroup.h</a> <a href="pointgroup_8h_source.shtml">[code]</a></td><td class="indexvalue">Brute-force point group detection </td></tr>
  <tr><td class="indexkey"><a class="el" href="query_8cpp.shtml">query.cpp</a></td><td class="indexvalue">OBQuery, OBQueryAtom &amp; OBQueryBond classes </td></tr>
  <tr><td class="indexkey"><a class="el" href="query_8h.shtml">query.h</a> <a href="query_8h_source.shtml">[code]</a></td><td class="indexvalue">OBQuery, OBQueryAtom &amp; OBQueryBond classes </td></tr>
  <tr><td class="indexkey"><a class="el" href="rand_8cpp.shtml">rand.cpp</a></td><td class="indexvalue">Pseudo random number generator </td></tr>
  <tr><td class="indexkey"><a class="el" href="rand_8h.shtml">rand.h</a> <a href="rand_8h_source.shtml">[code]</a></td><td class="indexvalue">Pseudo random number generator </td></tr>
  <tr><td class="indexkey"><a class="el" href="RDKitConv_8h.shtml">RDKitConv.h</a> <a href="RDKitConv_8h_source.shtml">[code]</a></td><td class="indexvalue">Allow conversion from OBMol to RDKit RWMol </td></tr>
  <tr><td class="indexkey"><a class="el" href="reaction_8h.shtml">reaction.h</a> <a href="reaction_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle chemical reactions (i.e., lists of reagents and products) </td></tr>
  <tr><td class="indexkey"><a class="el" href="residue_8cpp.shtml">residue.cpp</a></td><td class="indexvalue">Handle macromolecule residues </td></tr>
  <tr><td class="indexkey"><a class="el" href="residue_8h.shtml">residue.h</a> <a href="residue_8h_source.shtml">[code]</a></td><td class="indexvalue">Defines for residue properties, names, etc </td></tr>
  <tr><td class="indexkey"><a class="el" href="ring_8cpp.shtml">ring.cpp</a></td><td class="indexvalue">Deal with rings, find smallest set of smallest rings (SSSR) </td></tr>
  <tr><td class="indexkey"><a class="el" href="ring_8h.shtml">ring.h</a> <a href="ring_8h_source.shtml">[code]</a></td><td class="indexvalue">Deal with rings, find smallest set of smallest rings (SSSR) </td></tr>
  <tr><td class="indexkey"><a class="el" href="rotamer_8cpp.shtml">rotamer.cpp</a></td><td class="indexvalue">Handle rotamer list data </td></tr>
  <tr><td class="indexkey"><a class="el" href="rotamer_8h.shtml">rotamer.h</a> <a href="rotamer_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle rotamer list data </td></tr>
  <tr><td class="indexkey"><a class="el" href="rotor_8cpp.shtml">rotor.cpp</a></td><td class="indexvalue">Rotate dihedral angles according to rotor rules </td></tr>
  <tr><td class="indexkey"><a class="el" href="rotor_8h.shtml">rotor.h</a> <a href="rotor_8h_source.shtml">[code]</a></td><td class="indexvalue">Rotate torsional according to rotor rules </td></tr>
  <tr><td class="indexkey"><a class="el" href="shared__ptr_8h.shtml">shared_ptr.h</a> <a href="shared__ptr_8h_source.shtml">[code]</a></td><td class="indexvalue">Shared pointer </td></tr>
  <tr><td class="indexkey"><a class="el" href="spacegroup_8cpp.shtml">spacegroup.cpp</a></td><td class="indexvalue">Handle Crystallographic Space Groups </td></tr>
  <tr><td class="indexkey"><a class="el" href="spacegroup_8h.shtml">spacegroup.h</a> <a href="spacegroup_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle Crystallographic Space Groups </td></tr>
  <tr><td class="indexkey"><a class="el" href="spectrophore_8cpp.shtml">spectrophore.cpp</a></td><td class="indexvalue">Spectrophore(TM) calculator. Implementation of OBSpectrophore </td></tr>
  <tr><td class="indexkey"><a class="el" href="spectrophore_8h.shtml">spectrophore.h</a> <a href="spectrophore_8h_source.shtml">[code]</a></td><td class="indexvalue">Class to compute Spectrophores&trade; </td></tr>
  <tr><td class="indexkey"><a class="el" href="squareplanar_8h.shtml">squareplanar.h</a> <a href="squareplanar_8h_source.shtml">[code]</a></td><td class="indexvalue">Store and convert square-planar stereochemistry </td></tr>
  <tr><td class="indexkey"><a class="el" href="stereo_8h.shtml">stereo.h</a> <a href="stereo_8h_source.shtml">[code]</a></td><td class="indexvalue">Process molecular stereochemistry information </td></tr>
  <tr><td class="indexkey"><a class="el" href="tetrahedral_8h.shtml">tetrahedral.h</a> <a href="tetrahedral_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle general non-planar tetrahedral stereochemistry </td></tr>
  <tr><td class="indexkey"><a class="el" href="tetranonplanar_8h.shtml">tetranonplanar.h</a> <a href="tetranonplanar_8h_source.shtml">[code]</a></td><td class="indexvalue">Base class for handling and storing non-planar stereochemistry with 4 reference atom ids </td></tr>
  <tr><td class="indexkey"><a class="el" href="tetraplanar_8h.shtml">tetraplanar.h</a> <a href="tetraplanar_8h_source.shtml">[code]</a></td><td class="indexvalue">Base class for handling and storing planar stereochemistry with 4 reference atoms </td></tr>
  <tr><td class="indexkey"><a class="el" href="text_8h.shtml">text.h</a> <a href="text_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle generic non-chemical text processing </td></tr>
  <tr><td class="indexkey"><a class="el" href="tokenst_8cpp.shtml">tokenst.cpp</a></td><td class="indexvalue">Tokenize a string </td></tr>
  <tr><td class="indexkey"><a class="el" href="tokenst_8h.shtml">tokenst.h</a> <a href="tokenst_8h_source.shtml">[code]</a></td><td class="indexvalue">Tokenize strings, open data files </td></tr>
  <tr><td class="indexkey"><a class="el" href="transform_8cpp.shtml">transform.cpp</a></td><td class="indexvalue">Perform command-line requested transformations for OBMol and SMARTS filtering </td></tr>
  <tr><td class="indexkey"><a class="el" href="transform3d_8cpp.shtml">transform3d.cpp</a></td><td class="indexvalue">Handle 3D transformations in space groups </td></tr>
  <tr><td class="indexkey"><a class="el" href="transform3d_8h.shtml">transform3d.h</a> <a href="transform3d_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle 3D transformations in space groups </td></tr>
  <tr><td class="indexkey"><a class="el" href="typer_8cpp.shtml">typer.cpp</a></td><td class="indexvalue">Open Babel atom and aromaticity typer </td></tr>
  <tr><td class="indexkey"><a class="el" href="typer_8h.shtml">typer.h</a> <a href="typer_8h_source.shtml">[code]</a></td><td class="indexvalue">Open Babel atom and aromaticity typer </td></tr>
  <tr><td class="indexkey"><a class="el" href="vector3_8cpp.shtml">vector3.cpp</a></td><td class="indexvalue">Handle 3D coordinates </td></tr>
  <tr><td class="indexkey"><a class="el" href="vector3_8h.shtml">vector3.h</a> <a href="vector3_8h_source.shtml">[code]</a></td><td class="indexvalue">Handle 3D coordinates </td></tr>
  <tr><td class="indexkey"><a class="el" href="xml_8h.shtml">xml.h</a> <a href="xml_8h_source.shtml">[code]</a></td><td class="indexvalue">Declaration of XMLConversion, declaration and definition of XMLBaseFormat and XMLMoleculeFormat </td></tr>
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