1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150
|
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head><meta http-equiv="Content-Type" content="text/html;charset=utf-8">
<title>rotor.h File Reference</title>
<link href="/site.css" rel="stylesheet" type="text/css">
<link href="doxygen.css" rel="stylesheet" type="text/css">
<link href="tabs.css" rel="stylesheet" type="text/css">
<script type="text/javascript" src="search/search.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
</head>
<body>
<!--#include file="header.html" -->
<!-- Generated by Doxygen 1.7.5.1 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
<div id="navrow1" class="tabs">
<ul class="tablist">
<li><a href="index.shtml"><span>Main Page</span></a></li>
<li><a href="pages.shtml"><span>Related Pages</span></a></li>
<li><a href="modules.shtml"><span>Modules</span></a></li>
<li><a href="namespaces.shtml"><span>Namespaces</span></a></li>
<li><a href="annotated.shtml"><span>Classes</span></a></li>
<li class="current"><a href="files.shtml"><span>Files</span></a></li>
<li><a href="examples.shtml"><span>Examples</span></a></li>
<li>
<div id="MSearchBox" class="MSearchBoxInactive">
<span class="left">
<img id="MSearchSelect" src="search/mag_sel.png"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
alt=""/>
<input type="text" id="MSearchField" value="Search" accesskey="S"
onfocus="searchBox.OnSearchFieldFocus(true)"
onblur="searchBox.OnSearchFieldFocus(false)"
onkeyup="searchBox.OnSearchFieldChange(event)"/>
</span><span class="right">
<a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a>
</span>
</div>
</li>
</ul>
</div>
<div id="navrow2" class="tabs2">
<ul class="tablist">
<li><a href="files.shtml"><span>File List</span></a></li>
<li><a href="globals.shtml"><span>File Members</span></a></li>
</ul>
</div>
</div>
<div class="header">
<div class="summary">
<a href="#nested-classes">Classes</a> |
<a href="#namespaces">Namespaces</a> |
<a href="#define-members">Defines</a> |
<a href="#typedef-members">Typedefs</a> </div>
<div class="headertitle">
<div class="title">rotor.h File Reference</div> </div>
</div>
<div class="contents">
<div class="textblock"><code>#include <<a class="el" href="parsmart_8h_source.shtml">openbabel/parsmart.h</a>></code><br/>
<code>#include <<a class="el" href="typer_8h_source.shtml">openbabel/typer.h</a>></code><br/>
</div><div class="textblock"><div class="dynheader">
This graph shows which files directly or indirectly include this file:</div>
<div class="dyncontent">
<div class="center"><img src="rotor_8h__dep__incl.png" border="0" usemap="#rotor_8hdep" alt=""/></div>
<map name="rotor_8hdep" id="rotor_8hdep">
<area shape="rect" id="node3" href="conformersearch_8h.shtml" title="Conformer searching using genetic algorithm." alt="" coords="13,160,160,189"/><area shape="rect" id="node7" href="rotamer_8h.shtml" title="Handle rotamer list data." alt="" coords="299,83,387,112"/><area shape="rect" id="node10" href="builder_8cpp.shtml" title="Handle OBBuilder class." alt="" coords="184,160,277,189"/><area shape="rect" id="node12" href="forcefield_8cpp.shtml" title="Handle OBForceField class." alt="" coords="528,160,640,189"/><area shape="rect" id="node20" href="rotor_8cpp.shtml" title="Rotate dihedral angles according to rotor rules." alt="" coords="461,83,544,112"/><area shape="rect" id="node5" href="conformersearch_8cpp.shtml" title="Conformer searching using genetic algorithm." alt="" coords="5,237,168,267"/><area shape="rect" id="node14" href="mol_8cpp.shtml" title="Handle molecules. Implementation of OBMol." alt="" coords="429,160,504,189"/><area shape="rect" id="node16" href="rotamer_8cpp.shtml" title="Handle rotamer list data." alt="" coords="301,160,405,189"/></map>
</div>
</div>
<p><a href="rotor_8h_source.shtml">Go to the source code of this file.</a></p>
<table class="memberdecls">
<tr><td colspan="2"><h2><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorRule.shtml">OBRotorRule</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">A rule for torsional conformer searching, defined by a SMARTS pattern. <a href="classOpenBabel_1_1OBRotorRule.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorRules.shtml">OBRotorRules</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Database of default hybridization torsional rules and SMARTS-defined <a class="el" href="classOpenBabel_1_1OBRotorRule.shtml" title="A rule for torsional conformer searching, defined by a SMARTS pattern.">OBRotorRule</a> objects. <a href="classOpenBabel_1_1OBRotorRules.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotor.shtml">OBRotor</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">A single rotatable <a class="el" href="classOpenBabel_1_1OBBond.shtml" title="Bond class.">OBBond</a> as part of rotamer searching. <a href="classOpenBabel_1_1OBRotor.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorList.shtml">OBRotorList</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">Given an <a class="el" href="classOpenBabel_1_1OBMol.shtml" title="Molecule Class.">OBMol</a>, set up a list of possibly rotatable torsions,. <a href="classOpenBabel_1_1OBRotorList.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorKeys.shtml">OBRotorKeys</a></td></tr>
<tr><td class="mdescLeft"> </td><td class="mdescRight">A class to generate all possible rotorKeys. <a href="classOpenBabel_1_1OBRotorKeys.shtml#details">More...</a><br/></td></tr>
<tr><td colspan="2"><h2><a name="namespaces"></a>
Namespaces</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">namespace  </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenBabel.shtml">OpenBabel</a></td></tr>
<tr><td colspan="2"><h2><a name="define-members"></a>
Defines</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define </td><td class="memItemRight" valign="bottom"><a class="el" href="rotor_8h.shtml#aa1cf70a99e21bc2032e8867c6cafbb43">SQUARE</a>(x)   ((x)*(x))</td></tr>
<tr><td colspan="2"><h2><a name="typedef-members"></a>
Typedefs</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">typedef std::vector< OBRotor * ><br class="typebreak"/>
::iterator </td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenBabel.shtml#a434f394d0613a8ef6c119670ff49710f">OBRotorIterator</a></td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>Rotate torsional according to rotor rules. </p>
</div><hr/><h2>Define Documentation</h2>
<a class="anchor" id="aa1cf70a99e21bc2032e8867c6cafbb43"></a><!-- doxytag: member="rotor.h::SQUARE" ref="aa1cf70a99e21bc2032e8867c6cafbb43" args="(x)" -->
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">#define SQUARE</td>
<td>(</td>
<td class="paramtype"> </td>
<td class="paramname">x</td><td>)</td>
<td>   ((x)*(x))</td>
</tr>
</table>
</div>
<div class="memdoc">
</div>
</div>
</div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
onmouseover="return searchBox.OnSearchSelectShow()"
onmouseout="return searchBox.OnSearchSelectHide()"
onkeydown="return searchBox.OnSearchSelectKey(event)">
<a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(0)"><span class="SelectionMark"> </span>All</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(1)"><span class="SelectionMark"> </span>Classes</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(2)"><span class="SelectionMark"> </span>Namespaces</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(3)"><span class="SelectionMark"> </span>Files</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(4)"><span class="SelectionMark"> </span>Functions</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(5)"><span class="SelectionMark"> </span>Variables</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(6)"><span class="SelectionMark"> </span>Typedefs</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(7)"><span class="SelectionMark"> </span>Enumerations</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(8)"><span class="SelectionMark"> </span>Enumerator</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(9)"><span class="SelectionMark"> </span>Friends</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(10)"><span class="SelectionMark"> </span>Defines</a></div>
<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0"
name="MSearchResults" id="MSearchResults">
</iframe>
</div>
</div><!-- end content -->
<!--#include file="footer.html" -->
<div id="footer">
<hr size="1">
<img src="http://openbabel.org/babel256.png" width="136" height="127" alt="" style="float: left;" />
<p>This file is part of the documentation for <a href="http://openbabel.org/wiki/">Open Babel</a>, version 2.3.</p>
<div class="bottom">
Documentation copyright © 1998-2007, the <a href="http://openbabel.org/wiki/THANKS">Open Babel Developers</a>.<br>
Open Babel is hosted by: <a href="http://sourceforge.net">
<img src="http://sourceforge.net/sflogo.php?group_id=40728"
width="88" height="31" border="0" alt="SourceForge Logo"></a><br>
Generated on Thu Oct 13 2011 16:08:08 by <a href="http://www.doxygen.org/"><img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.7.5.1.
</div>
</body>
</html>
|