File: rotor_8h.shtml

package info (click to toggle)
openbabel 2.3.2%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 75,308 kB
  • ctags: 41,952
  • sloc: cpp: 321,252; ansic: 89,228; python: 7,262; perl: 6,418; pascal: 793; sh: 194; xml: 97; ruby: 55; makefile: 47; java: 23
file content (150 lines) | stat: -rw-r--r-- 11,201 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head><meta http-equiv="Content-Type" content="text/html;charset=utf-8">
<title>rotor.h File Reference</title>
<link href="/site.css" rel="stylesheet" type="text/css">
<link href="doxygen.css" rel="stylesheet" type="text/css">
<link href="tabs.css" rel="stylesheet" type="text/css">
<script type="text/javascript" src="search/search.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
</head>

<body>

<!--#include file="header.html" -->
<!-- Generated by Doxygen 1.7.5.1 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
  <div id="navrow1" class="tabs">
    <ul class="tablist">
      <li><a href="index.shtml"><span>Main&#160;Page</span></a></li>
      <li><a href="pages.shtml"><span>Related&#160;Pages</span></a></li>
      <li><a href="modules.shtml"><span>Modules</span></a></li>
      <li><a href="namespaces.shtml"><span>Namespaces</span></a></li>
      <li><a href="annotated.shtml"><span>Classes</span></a></li>
      <li class="current"><a href="files.shtml"><span>Files</span></a></li>
      <li><a href="examples.shtml"><span>Examples</span></a></li>
      <li>
        <div id="MSearchBox" class="MSearchBoxInactive">
        <span class="left">
          <img id="MSearchSelect" src="search/mag_sel.png"
               onmouseover="return searchBox.OnSearchSelectShow()"
               onmouseout="return searchBox.OnSearchSelectHide()"
               alt=""/>
          <input type="text" id="MSearchField" value="Search" accesskey="S"
               onfocus="searchBox.OnSearchFieldFocus(true)" 
               onblur="searchBox.OnSearchFieldFocus(false)" 
               onkeyup="searchBox.OnSearchFieldChange(event)"/>
          </span><span class="right">
            <a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a>
          </span>
        </div>
      </li>
    </ul>
  </div>
  <div id="navrow2" class="tabs2">
    <ul class="tablist">
      <li><a href="files.shtml"><span>File&#160;List</span></a></li>
      <li><a href="globals.shtml"><span>File&#160;Members</span></a></li>
    </ul>
  </div>
</div>
<div class="header">
  <div class="summary">
<a href="#nested-classes">Classes</a> &#124;
<a href="#namespaces">Namespaces</a> &#124;
<a href="#define-members">Defines</a> &#124;
<a href="#typedef-members">Typedefs</a>  </div>
  <div class="headertitle">
<div class="title">rotor.h File Reference</div>  </div>
</div>
<div class="contents">
<div class="textblock"><code>#include &lt;<a class="el" href="parsmart_8h_source.shtml">openbabel/parsmart.h</a>&gt;</code><br/>
<code>#include &lt;<a class="el" href="typer_8h_source.shtml">openbabel/typer.h</a>&gt;</code><br/>
</div><div class="textblock"><div class="dynheader">
This graph shows which files directly or indirectly include this file:</div>
<div class="dyncontent">
<div class="center"><img src="rotor_8h__dep__incl.png" border="0" usemap="#rotor_8hdep" alt=""/></div>
<map name="rotor_8hdep" id="rotor_8hdep">
<area shape="rect" id="node3" href="conformersearch_8h.shtml" title="Conformer searching using genetic algorithm." alt="" coords="13,160,160,189"/><area shape="rect" id="node7" href="rotamer_8h.shtml" title="Handle rotamer list data." alt="" coords="299,83,387,112"/><area shape="rect" id="node10" href="builder_8cpp.shtml" title="Handle OBBuilder class." alt="" coords="184,160,277,189"/><area shape="rect" id="node12" href="forcefield_8cpp.shtml" title="Handle OBForceField class." alt="" coords="528,160,640,189"/><area shape="rect" id="node20" href="rotor_8cpp.shtml" title="Rotate dihedral angles according to rotor rules." alt="" coords="461,83,544,112"/><area shape="rect" id="node5" href="conformersearch_8cpp.shtml" title="Conformer searching using genetic algorithm." alt="" coords="5,237,168,267"/><area shape="rect" id="node14" href="mol_8cpp.shtml" title="Handle molecules. Implementation of OBMol." alt="" coords="429,160,504,189"/><area shape="rect" id="node16" href="rotamer_8cpp.shtml" title="Handle rotamer list data." alt="" coords="301,160,405,189"/></map>
</div>
</div>
<p><a href="rotor_8h_source.shtml">Go to the source code of this file.</a></p>
<table class="memberdecls">
<tr><td colspan="2"><h2><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorRule.shtml">OBRotorRule</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">A rule for torsional conformer searching, defined by a SMARTS pattern.  <a href="classOpenBabel_1_1OBRotorRule.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorRules.shtml">OBRotorRules</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">Database of default hybridization torsional rules and SMARTS-defined <a class="el" href="classOpenBabel_1_1OBRotorRule.shtml" title="A rule for torsional conformer searching, defined by a SMARTS pattern.">OBRotorRule</a> objects.  <a href="classOpenBabel_1_1OBRotorRules.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotor.shtml">OBRotor</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">A single rotatable <a class="el" href="classOpenBabel_1_1OBBond.shtml" title="Bond class.">OBBond</a> as part of rotamer searching.  <a href="classOpenBabel_1_1OBRotor.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorList.shtml">OBRotorList</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">Given an <a class="el" href="classOpenBabel_1_1OBMol.shtml" title="Molecule Class.">OBMol</a>, set up a list of possibly rotatable torsions,.  <a href="classOpenBabel_1_1OBRotorList.shtml#details">More...</a><br/></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classOpenBabel_1_1OBRotorKeys.shtml">OBRotorKeys</a></td></tr>
<tr><td class="mdescLeft">&#160;</td><td class="mdescRight">A class to generate all possible rotorKeys.  <a href="classOpenBabel_1_1OBRotorKeys.shtml#details">More...</a><br/></td></tr>
<tr><td colspan="2"><h2><a name="namespaces"></a>
Namespaces</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">namespace &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenBabel.shtml">OpenBabel</a></td></tr>
<tr><td colspan="2"><h2><a name="define-members"></a>
Defines</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">#define&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="rotor_8h.shtml#aa1cf70a99e21bc2032e8867c6cafbb43">SQUARE</a>(x)&#160;&#160;&#160;((x)*(x))</td></tr>
<tr><td colspan="2"><h2><a name="typedef-members"></a>
Typedefs</h2></td></tr>
<tr><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; OBRotor * &gt;<br class="typebreak"/>
::iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceOpenBabel.shtml#a434f394d0613a8ef6c119670ff49710f">OBRotorIterator</a></td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><p>Rotate torsional according to rotor rules. </p>
</div><hr/><h2>Define Documentation</h2>
<a class="anchor" id="aa1cf70a99e21bc2032e8867c6cafbb43"></a><!-- doxytag: member="rotor.h::SQUARE" ref="aa1cf70a99e21bc2032e8867c6cafbb43" args="(x)" -->
<div class="memitem">
<div class="memproto">
      <table class="memname">
        <tr>
          <td class="memname">#define SQUARE</td>
          <td>(</td>
          <td class="paramtype">&#160;</td>
          <td class="paramname">x</td><td>)</td>
          <td>&#160;&#160;&#160;((x)*(x))</td>
        </tr>
      </table>
</div>
<div class="memdoc">

</div>
</div>
</div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
     onmouseover="return searchBox.OnSearchSelectShow()"
     onmouseout="return searchBox.OnSearchSelectHide()"
     onkeydown="return searchBox.OnSearchSelectKey(event)">
<a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(0)"><span class="SelectionMark">&#160;</span>All</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(1)"><span class="SelectionMark">&#160;</span>Classes</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(2)"><span class="SelectionMark">&#160;</span>Namespaces</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(3)"><span class="SelectionMark">&#160;</span>Files</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(4)"><span class="SelectionMark">&#160;</span>Functions</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(5)"><span class="SelectionMark">&#160;</span>Variables</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(6)"><span class="SelectionMark">&#160;</span>Typedefs</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(7)"><span class="SelectionMark">&#160;</span>Enumerations</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(8)"><span class="SelectionMark">&#160;</span>Enumerator</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(9)"><span class="SelectionMark">&#160;</span>Friends</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(10)"><span class="SelectionMark">&#160;</span>Defines</a></div>

<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0" 
        name="MSearchResults" id="MSearchResults">
</iframe>
</div>

</div><!-- end content -->

<!--#include file="footer.html" -->

<div id="footer">
<hr size="1">
<img src="http://openbabel.org/babel256.png" width="136" height="127" alt="" style="float: left;" />
<p>This file is part of the documentation for <a href="http://openbabel.org/wiki/">Open Babel</a>, version 2.3.</p>
<div class="bottom">
Documentation copyright &copy; 1998-2007, the <a href="http://openbabel.org/wiki/THANKS">Open Babel Developers</a>.<br>
Open Babel is hosted by: <a href="http://sourceforge.net">
<img src="http://sourceforge.net/sflogo.php?group_id=40728" 
width="88" height="31" border="0" alt="SourceForge Logo"></a><br>
Generated on Thu Oct 13 2011 16:08:08 by&nbsp;<a href="http://www.doxygen.org/"><img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.7.5.1.
</div>

</body>
</html>