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#include "obtest.h"
#include <openbabel/isomorphism.h>
#include <openbabel/query.h>
#include <openbabel/mol.h>
#include <openbabel/obconversion.h>
using namespace std;
using namespace OpenBabel;
bool doAutomorphismTest(OBMol &mol, int numAutomorphisms)
{
OBIsomorphismMapper::Mappings G;
FindAutomorphisms(&mol, G);
return (G.size() == numAutomorphisms);
}
void testAutomorphisms()
{
cout << "testAutomorphisms" << endl;
OBMol mol;
OBConversion conv;
conv.SetInFormat("smi");
conv.ReadString(&mol, "C1C(CC2CC2)C1");
Automorphisms aut;
FindAutomorphisms((OBMol*)&mol, aut);
cout << aut.size() << endl;
OB_ASSERT( aut.size() == 8 );
}
/**
* Test detection of stereoisomers
*/
int automorphismtest(int argc, char* argv[])
{
int defaultchoice = 1;
int choice = defaultchoice;
if (argc > 1) {
if(sscanf(argv[1], "%d", &choice) != 1) {
printf("Couldn't parse that input as a number\n");
return -1;
}
}
// Define location of file formats for testing
#ifdef FORMATDIR
char env[BUFF_SIZE];
snprintf(env, BUFF_SIZE, "BABEL_LIBDIR=%s", FORMATDIR);
putenv(env);
#endif
OBMol mol;
OBConversion conv;
OB_ASSERT( conv.SetInFormat("mol") );
switch(choice) {
case 1:
testAutomorphisms();
break;
case 2:
/*
* Computers & Chemistry 26 (2002) 119-123
*
* Figure 2. Test graphs
*/
cout << "Hao, Xu paper, fig. 2: structure 1" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_1.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 8) );
break;
case 3:
cout << "Hao, Xu paper, fig. 2: structure 2" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_2.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 2) );
break;
case 4:
cout << "Hao, Xu paper, fig. 2: structure 3" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_3.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 48) );
break;
case 5:
cout << "Hao, Xu paper, fig. 2: structure 4" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_4.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 2) );
break;
case 6:
cout << "Hao, Xu paper, fig. 2: structure 5" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_5.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 2) );
break;
case 7:
cout << "Hao, Xu paper, fig. 2: structure 6" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_6.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 6) );
break;
case 8:
cout << "Hao, Xu paper, fig. 2: structure 7" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_7.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 1) );
break;
case 9:
cout << "Hao, Xu paper, fig. 2: structure 8" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_8.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 1) );
break;
case 10:
cout << "Hao, Xu paper, fig. 2: structure 9" << endl;
OB_ASSERT( conv.ReadFile(&mol, OBTestUtil::GetFilename("hao_xu_9.mol")) );
OB_ASSERT( doAutomorphismTest(mol, 20) );
break;
default:
cout << "Test number " << choice << " does not exist!\n";
return -1;
}
return 0;
}
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