File: checkTools.C

package info (click to toggle)
openfoam 1812%2Bdfsg1-2
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 220,284 kB
  • sloc: cpp: 1,038,902; sh: 14,536; ansic: 8,240; lex: 657; xml: 387; python: 300; awk: 212; makefile: 94; sed: 88; csh: 3
file content (497 lines) | stat: -rw-r--r-- 13,587 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | Copyright (C) 2015-2017 OpenFOAM Foundation
     \\/     M anipulation  | Copyright (C) 2015-2018 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.

    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.

    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.

\*---------------------------------------------------------------------------*/

#include "checkTools.H"
#include "polyMesh.H"
#include "globalMeshData.H"
#include "hexMatcher.H"
#include "wedgeMatcher.H"
#include "prismMatcher.H"
#include "pyrMatcher.H"
#include "tetWedgeMatcher.H"
#include "tetMatcher.H"
#include "IOmanip.H"
#include "pointSet.H"
#include "faceSet.H"
#include "cellSet.H"
#include "Time.H"
#include "surfaceWriter.H"
#include "syncTools.H"
#include "globalIndex.H"
#include "PatchTools.H"
#include "functionObject.H"

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

void Foam::printMeshStats(const polyMesh& mesh, const bool allTopology)
{
    Info<< "Mesh stats" << nl
        << "    points:           "
        << returnReduce(mesh.points().size(), sumOp<label>()) << nl;

    label nInternalPoints = returnReduce
    (
        mesh.nInternalPoints(),
        sumOp<label>()
    );

    if (nInternalPoints != -Pstream::nProcs())
    {
        Info<< "    internal points:  " << nInternalPoints << nl;

        if (returnReduce(mesh.nInternalPoints(), minOp<label>()) == -1)
        {
            WarningInFunction
                << "Some processors have their points sorted into internal"
                << " and external and some do not." << endl
                << "This can cause problems later on." << endl;
        }
    }

    if (allTopology && nInternalPoints != -Pstream::nProcs())
    {
        label nEdges = returnReduce(mesh.nEdges(), sumOp<label>());
        label nInternalEdges = returnReduce
        (
            mesh.nInternalEdges(),
            sumOp<label>()
        );
        label nInternal1Edges = returnReduce
        (
            mesh.nInternal1Edges(),
            sumOp<label>()
        );
        label nInternal0Edges = returnReduce
        (
            mesh.nInternal0Edges(),
            sumOp<label>()
        );

        Info<< "    edges:            " << nEdges << nl
            << "    internal edges:   " << nInternalEdges << nl
            << "    internal edges using one boundary point:   "
            << nInternal1Edges-nInternal0Edges << nl
            << "    internal edges using two boundary points:  "
            << nInternalEdges-nInternal1Edges << nl;
    }

    label nFaces = returnReduce(mesh.faces().size(), sumOp<label>());
    label nIntFaces = returnReduce(mesh.faceNeighbour().size(), sumOp<label>());
    label nCells = returnReduce(mesh.cells().size(), sumOp<label>());

    Info<< "    faces:            " << nFaces << nl
        << "    internal faces:   " << nIntFaces << nl
        << "    cells:            " << nCells << nl
        << "    faces per cell:   "
        << (scalar(nFaces) + scalar(nIntFaces))/max(1, nCells) << nl
        << "    boundary patches: " << mesh.boundaryMesh().size() << nl
        << "    point zones:      " << mesh.pointZones().size() << nl
        << "    face zones:       " << mesh.faceZones().size() << nl
        << "    cell zones:       " << mesh.cellZones().size() << nl
        << endl;

    // Construct shape recognizers
    hexMatcher hex;
    prismMatcher prism;
    wedgeMatcher wedge;
    pyrMatcher pyr;
    tetWedgeMatcher tetWedge;
    tetMatcher tet;

    // Counters for different cell types
    label nHex = 0;
    label nWedge = 0;
    label nPrism = 0;
    label nPyr = 0;
    label nTet = 0;
    label nTetWedge = 0;
    label nUnknown = 0;

    Map<label> polyhedralFaces;

    for (label celli = 0; celli < mesh.nCells(); celli++)
    {
        if (hex.isA(mesh, celli))
        {
            nHex++;
        }
        else if (tet.isA(mesh, celli))
        {
            nTet++;
        }
        else if (pyr.isA(mesh, celli))
        {
            nPyr++;
        }
        else if (prism.isA(mesh, celli))
        {
            nPrism++;
        }
        else if (wedge.isA(mesh, celli))
        {
            nWedge++;
        }
        else if (tetWedge.isA(mesh, celli))
        {
            nTetWedge++;
        }
        else
        {
            nUnknown++;
            polyhedralFaces(mesh.cells()[celli].size())++;
        }
    }

    reduce(nHex,sumOp<label>());
    reduce(nPrism,sumOp<label>());
    reduce(nWedge,sumOp<label>());
    reduce(nPyr,sumOp<label>());
    reduce(nTetWedge,sumOp<label>());
    reduce(nTet,sumOp<label>());
    reduce(nUnknown,sumOp<label>());

    Info<< "Overall number of cells of each type:" << nl
        << "    hexahedra:     " << nHex << nl
        << "    prisms:        " << nPrism << nl
        << "    wedges:        " << nWedge << nl
        << "    pyramids:      " << nPyr << nl
        << "    tet wedges:    " << nTetWedge << nl
        << "    tetrahedra:    " << nTet << nl
        << "    polyhedra:     " << nUnknown
        << endl;

    if (nUnknown > 0)
    {
        Pstream::mapCombineGather(polyhedralFaces, plusEqOp<label>());

        Info<< "    Breakdown of polyhedra by number of faces:" << nl
            << "        faces" << "   number of cells" << endl;

        const labelList sortedKeys = polyhedralFaces.sortedToc();

        forAll(sortedKeys, keyi)
        {
            const label nFaces = sortedKeys[keyi];

            Info<< setf(std::ios::right) << setw(13)
                << nFaces << "   " << polyhedralFaces[nFaces] << nl;
        }
    }

    Info<< endl;
}


void Foam::mergeAndWrite
(
    const polyMesh& mesh,
    const surfaceWriter& writer,
    const word& name,
    const indirectPrimitivePatch& setPatch,
    const fileName& outputDir
)
{
    if (Pstream::parRun())
    {
        labelList pointToGlobal;
        labelList uniqueMeshPointLabels;
        autoPtr<globalIndex> globalPoints;
        autoPtr<globalIndex> globalFaces;
        faceList mergedFaces;
        pointField mergedPoints;
        Foam::PatchTools::gatherAndMerge
        (
            mesh,
            setPatch.localFaces(),
            setPatch.meshPoints(),
            setPatch.meshPointMap(),

            pointToGlobal,
            uniqueMeshPointLabels,
            globalPoints,
            globalFaces,

            mergedFaces,
            mergedPoints
        );

        // Write
        if (Pstream::master())
        {
            writer.write
            (
                outputDir,
                name,
                meshedSurfRef
                (
                    mergedPoints,
                    mergedFaces
                )
            );
        }
    }
    else
    {
        writer.write
        (
            outputDir,
            name,
            meshedSurfRef
            (
                setPatch.localPoints(),
                setPatch.localFaces()
            )
        );
    }
}


void Foam::mergeAndWrite
(
    const surfaceWriter& writer,
    const faceSet& set
)
{
    const polyMesh& mesh = refCast<const polyMesh>(set.db());

    const indirectPrimitivePatch setPatch
    (
        IndirectList<face>(mesh.faces(), set.sortedToc()),
        mesh.points()
    );

    fileName outputDir
    (
        set.time().globalPath()
      / functionObject::outputPrefix
      / mesh.pointsInstance()
      / set.name()
    );
    outputDir.clean();

    mergeAndWrite(mesh, writer, set.name(), setPatch, outputDir);
}


void Foam::mergeAndWrite
(
    const surfaceWriter& writer,
    const cellSet& set
)
{
    const polyMesh& mesh = refCast<const polyMesh>(set.db());
    const polyBoundaryMesh& pbm = mesh.boundaryMesh();


    // Determine faces on outside of cellSet
    bitSet isInSet(mesh.nCells());
    forAllConstIter(cellSet, set, iter)
    {
        isInSet.set(iter.key());
    }


    boolList bndInSet(mesh.nBoundaryFaces());
    forAll(pbm, patchi)
    {
        const polyPatch& pp = pbm[patchi];
        const labelList& fc = pp.faceCells();
        forAll(fc, i)
        {
            bndInSet[pp.start()+i-mesh.nInternalFaces()] = isInSet[fc[i]];
        }
    }
    syncTools::swapBoundaryFaceList(mesh, bndInSet);


    DynamicList<label> outsideFaces(3*set.size());
    for (label facei = 0; facei < mesh.nInternalFaces(); facei++)
    {
        const bool ownVal = isInSet[mesh.faceOwner()[facei]];
        const bool neiVal = isInSet[mesh.faceNeighbour()[facei]];

        if (ownVal != neiVal)
        {
            outsideFaces.append(facei);
        }
    }


    forAll(pbm, patchi)
    {
        const polyPatch& pp = pbm[patchi];
        const labelList& fc = pp.faceCells();
        if (pp.coupled())
        {
            forAll(fc, i)
            {
                label facei = pp.start()+i;

                const bool neiVal = bndInSet[facei-mesh.nInternalFaces()];
                if (isInSet[fc[i]] && !neiVal)
                {
                    outsideFaces.append(facei);
                }
            }
        }
        else
        {
            forAll(fc, i)
            {
                if (isInSet[fc[i]])
                {
                    outsideFaces.append(pp.start()+i);
                }
            }
        }
    }


    const indirectPrimitivePatch setPatch
    (
        IndirectList<face>(mesh.faces(), outsideFaces),
        mesh.points()
    );

    fileName outputDir
    (
        set.time().globalPath()
      / functionObject::outputPrefix
      / mesh.pointsInstance()
      / set.name()
    );
    outputDir.clean();

    mergeAndWrite(mesh, writer, set.name(), setPatch, outputDir);
}


void Foam::mergeAndWrite
(
    const writer<scalar>& writer,
    const pointSet& set
)
{
    const polyMesh& mesh = refCast<const polyMesh>(set.db());

    pointField mergedPts;
    labelList mergedIDs;

    if (Pstream::parRun())
    {
        // Note: we explicitly do not merge the points
        // (mesh.globalData().mergePoints etc) since this might
        // hide any synchronisation problem

        globalIndex globalNumbering(mesh.nPoints());

        mergedPts.setSize(returnReduce(set.size(), sumOp<label>()));
        mergedIDs.setSize(mergedPts.size());

        labelList setPointIDs(set.sortedToc());

        // Get renumbered local data
        pointField myPoints(mesh.points(), setPointIDs);
        labelList myIDs(globalNumbering.toGlobal(setPointIDs));

        if (Pstream::master())
        {
            // Insert master data first
            label pOffset = 0;
            SubList<point>(mergedPts, myPoints.size(), pOffset) = myPoints;
            SubList<label>(mergedIDs, myIDs.size(), pOffset) = myIDs;
            pOffset += myPoints.size();

            // Receive slave ones
            for (int slave=1; slave<Pstream::nProcs(); slave++)
            {
                IPstream fromSlave(Pstream::commsTypes::scheduled, slave);

                pointField slavePts(fromSlave);
                labelList slaveIDs(fromSlave);

                SubList<point>(mergedPts, slavePts.size(), pOffset) = slavePts;
                SubList<label>(mergedIDs, slaveIDs.size(), pOffset) = slaveIDs;
                pOffset += slaveIDs.size();
            }
        }
        else
        {
            // Construct processor stream with estimate of size. Could
            // be improved.
            OPstream toMaster
            (
                Pstream::commsTypes::scheduled,
                Pstream::masterNo(),
                myPoints.byteSize() + myIDs.byteSize()
            );
            toMaster << myPoints << myIDs;
        }
    }
    else
    {
        mergedIDs = set.sortedToc();
        mergedPts = pointField(mesh.points(), mergedIDs);
    }


    // Write with scalar pointID
    if (Pstream::master())
    {
        scalarField scalarPointIDs(mergedIDs.size());
        forAll(mergedIDs, i)
        {
            scalarPointIDs[i] = 1.0*mergedIDs[i];
        }

        coordSet points(set.name(), "distance", mergedPts, mag(mergedPts));

        List<const scalarField*> flds(1, &scalarPointIDs);

        wordList fldNames(1, "pointID");

        // Output e.g. pointSet p0 to
        // postProcessing/<time>/p0.vtk
        fileName outputDir
        (
            set.time().globalPath()
          / functionObject::outputPrefix
          / mesh.pointsInstance()
          // set.name()
        );
        outputDir.clean();
        mkDir(outputDir);

        fileName outputFile(outputDir/writer.getFileName(points, wordList()));
        //fileName outputFile(outputDir/set.name());

        OFstream os(outputFile);

        writer.write(points, fldNames, flds, os);
    }
}


// ************************************************************************* //