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Description: Skipping tests that either take too long, require unsupported
platforms, or are too memory-intensive.
Author: Andrius Merkys <merkys@debian.org>
Forwarded: not-needed
--- a/wrappers/python/tests/TestModeller.py
+++ b/wrappers/python/tests/TestModeller.py
@@ -1153,7 +1153,7 @@
expectedDist = 0.09 if j == 0 else 0.147
self.assertTrue(dist > (expectedDist-0.01)*nanometers and dist < (expectedDist+0.01)*nanometers)
-
+ @unittest.skipIf(True, "Skipping a test which takes too long")
def test_addMembrane(self):
"""Test adding a membrane to a realistic system."""
--- a/wrappers/python/tests/TestCharmmFiles.py
+++ b/wrappers/python/tests/TestCharmmFiles.py
@@ -174,6 +174,7 @@
energy = state.getPotentialEnergy().value_in_unit(kilocalories_per_mole)
self.assertAlmostEqual(energy, 3.1166, delta=1e-4)
+ @unittest.skipIf(True, 'Skipping test failing due to missing platforms')
def test_NBThole(self):
"""Tests CHARMM system with NBTHole"""
warnings.filterwarnings('ignore', category=CharmmPSFWarning)
@@ -224,6 +225,7 @@
self.assertAlmostEqual(pbv2[2][1]/nanometers, 0.963813269981581)
self.assertAlmostEqual(pbv2[2][2]/nanometers, 2.1083683604879377)
+ @unittest.skipIf(True, 'Skipping test failing due to missing platforms')
def test_Drude(self):
"""Test CHARMM systems with Drude force field"""
warnings.filterwarnings('ignore', category=CharmmPSFWarning)
--- a/wrappers/python/tests/TestIntegrators.py
+++ b/wrappers/python/tests/TestIntegrators.py
@@ -200,6 +200,7 @@
integrator.step(5)
self.assertNotEqual(integrator.computeHeatBathEnergy(), 0.0*kilojoule_per_mole)
+ @unittest.skipIf(True, 'Skipping test failing due to missing platforms')
def testDrudeNoseHooverIntegrator(self):
"""Test the DrudeNoseHooverIntegrator"""
warnings.filterwarnings('ignore', category=CharmmPSFWarning)
--- a/wrappers/python/tests/TestForceField.py
+++ b/wrappers/python/tests/TestForceField.py
@@ -1111,6 +1111,7 @@
# If the check is not done correctly, this will throw an exception.
ff.createSystem(pdb.topology)
+ @unittest.skipIf(True, 'Skipping test failing due to missing platforms')
def test_CharmmPolar(self):
"""Test the CHARMM polarizable force field."""
pdb = PDBFile('systems/ala_ala_ala_drude.pdb')
@@ -1410,6 +1411,7 @@
system = self.forcefield1.createSystem(self.pdb1.topology, rigidWater=None)
self.assertEqual(0, system.getNumConstraints())
+ @unittest.skipIf(True, 'Skipping test failing due to missing platforms')
def test_Forces(self):
"""Compute forces and compare them to ones generated with a previous version of OpenMM to ensure they haven't changed."""
@@ -1441,6 +1443,7 @@
energies[f.getName()] = state.getPotentialEnergy().value_in_unit(kilocalories_per_mole)
return energies
+ @unittest.skipIf(True, 'Skipping test failing due to missing platforms')
def test_Amoeba18BPTI(self):
"""Test that AMOEBA18 computes energies correctly for BPTI."""
energies = self.computeAmoeba18Energies('systems/bpti.pdb')
@@ -1458,6 +1461,7 @@
self.assertAlmostEqual(-1323.5640-225.3660, energies['AmoebaMultipoleForce'], 2)
self.assertAlmostEqual(-258.9676, sum(list(energies.values())), 2)
+ @unittest.skipIf(True, 'Skipping test failing due to missing platforms')
def test_Amoeba18Nucleic(self):
"""Test that AMOEBA18 computes energies correctly for DNA and RNA."""
energies = self.computeAmoeba18Energies('systems/nucleic.pdb')
--- a/platforms/cpu/tests/TestCpuNonbondedForce.cpp
+++ b/platforms/cpu/tests/TestCpuNonbondedForce.cpp
@@ -33,5 +33,5 @@
#include "TestNonbondedForce.h"
void runPlatformTests() {
- testHugeSystem();
+ // testHugeSystem(); // fails with 'child killed'
}
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