File: coll_basic_reduce.c

package info (click to toggle)
openmpi 1.6.5-9.1
  • links: PTS, VCS
  • area: main
  • in suites: jessie-kfreebsd
  • size: 91,652 kB
  • sloc: ansic: 408,966; cpp: 44,454; sh: 27,828; makefile: 10,486; asm: 3,882; python: 1,239; lex: 805; perl: 549; csh: 253; fortran: 232; f90: 126; tcl: 12
file content (601 lines) | stat: -rw-r--r-- 21,241 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
/*
 * Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
 *                         University Research and Technology
 *                         Corporation.  All rights reserved.
 * Copyright (c) 2004-2006 The University of Tennessee and The University
 *                         of Tennessee Research Foundation.  All rights
 *                         reserved.
 * Copyright (c) 2004-2005 High Performance Computing Center Stuttgart, 
 *                         University of Stuttgart.  All rights reserved.
 * Copyright (c) 2004-2005 The Regents of the University of California.
 *                         All rights reserved.
 * $COPYRIGHT$
 * 
 * Additional copyrights may follow
 * 
 * $HEADER$
 */

#include "ompi_config.h"
#include "coll_basic.h"

#include <stdio.h>

#include "mpi.h"
#include "ompi/constants.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/mca/coll/base/coll_tags.h"
#include "ompi/mca/pml/pml.h"
#include "ompi/op/op.h"

/*
 *	reduce_lin_intra
 *
 *	Function:	- reduction using O(N) algorithm
 *	Accepts:	- same as MPI_Reduce()
 *	Returns:	- MPI_SUCCESS or error code
 */
int
mca_coll_basic_reduce_lin_intra(void *sbuf, void *rbuf, int count,
                                struct ompi_datatype_t *dtype,
                                struct ompi_op_t *op,
                                int root, struct ompi_communicator_t *comm,
                                mca_coll_base_module_t *module)
{
    int i, rank, err, size;
    ptrdiff_t true_lb, true_extent, lb, extent;
    char *free_buffer = NULL;
    char *pml_buffer = NULL;
    char *inplace_temp = NULL;
    char *inbuf;

    /* Initialize */

    rank = ompi_comm_rank(comm);
    size = ompi_comm_size(comm);

    /* If not root, send data to the root. */

    if (rank != root) {
        err = MCA_PML_CALL(send(sbuf, count, dtype, root,
                                MCA_COLL_BASE_TAG_REDUCE,
                                MCA_PML_BASE_SEND_STANDARD, comm));
        return err;
    }

    /* Root receives and reduces messages.  Allocate buffer to receive
     * messages.  This comment applies to all collectives in this basic
     * module where we allocate a temporary buffer.  For the next few
     * lines of code, it's tremendously complicated how we decided that
     * this was the Right Thing to do.  Sit back and enjoy.  And prepare
     * to have your mind warped. :-)
     * 
     * Recall some definitions (I always get these backwards, so I'm
     * going to put them here):
     * 
     * extent: the length from the lower bound to the upper bound -- may
     * be considerably larger than the buffer required to hold the data
     * (or smaller!  But it's easiest to think about when it's larger).
     * 
     * true extent: the exact number of bytes required to hold the data
     * in the layout pattern in the datatype.
     * 
     * For example, consider the following buffer (just talking about
     * LB, extent, and true extent -- extrapolate for UB; i.e., assume
     * the UB equals exactly where the data ends):
     * 
     * A              B                                       C
     * --------------------------------------------------------
     * |              |                                       |
     * --------------------------------------------------------
     * 
     * There are multiple cases:
     * 
     * 1. A is what we give to MPI_Send (and friends), and A is where
     * the data starts, and C is where the data ends.  In this case:
     * 
     * - extent: C-A
     * - true extent: C-A
     * - LB: 0
     * 
     * A                                                      C
     * --------------------------------------------------------
     * |                                                      |
     * --------------------------------------------------------
     * <=======================extent=========================>
     * <======================true extent=====================>
     * 
     * 2. A is what we give to MPI_Send (and friends), B is where the
     * data starts, and C is where the data ends.  In this case:
     * 
     * - extent: C-A
     * - true extent: C-B
     * - LB: positive
     * 
     * A              B                                       C
     * --------------------------------------------------------
     * |              |           User buffer                 |
     * --------------------------------------------------------
     * <=======================extent=========================>
     * <===============true extent=============>
     * 
     * 3. B is what we give to MPI_Send (and friends), A is where the
     * data starts, and C is where the data ends.  In this case:
     * 
     * - extent: C-A
     * - true extent: C-A
     * - LB: negative
     * 
     * A              B                                       C
     * --------------------------------------------------------
     * |              |           User buffer                 |
     * --------------------------------------------------------
     * <=======================extent=========================>
     * <======================true extent=====================>
     * 
     * 4. MPI_BOTTOM is what we give to MPI_Send (and friends), B is
     * where the data starts, and C is where the data ends.  In this
     * case:
     * 
     * - extent: C-MPI_BOTTOM
     * - true extent: C-B
     * - LB: [potentially very large] positive
     * 
     * MPI_BOTTOM     B                                       C
     * --------------------------------------------------------
     * |              |           User buffer                 |
     * --------------------------------------------------------
     * <=======================extent=========================>
     * <===============true extent=============>
     * 
     * So in all cases, for a temporary buffer, all we need to malloc()
     * is a buffer of size true_extent.  We therefore need to know two
     * pointer values: what value to give to MPI_Send (and friends) and
     * what value to give to free(), because they might not be the same.
     * 
     * Clearly, what we give to free() is exactly what was returned from
     * malloc().  That part is easy.  :-)
     * 
     * What we give to MPI_Send (and friends) is a bit more complicated.
     * Let's take the 4 cases from above:
     * 
     * 1. If A is what we give to MPI_Send and A is where the data
     * starts, then clearly we give to MPI_Send what we got back from
     * malloc().
     * 
     * 2. If B is what we get back from malloc, but we give A to
     * MPI_Send, then the buffer range [A,B) represents "dead space"
     * -- no data will be put there.  So it's safe to give B-LB to
     * MPI_Send.  More specifically, the LB is positive, so B-LB is
     * actually A.
     * 
     * 3. If A is what we get back from malloc, and B is what we give to
     * MPI_Send, then the LB is negative, so A-LB will actually equal
     * B.
     * 
     * 4. Although this seems like the weirdest case, it's actually
     * quite similar to case #2 -- the pointer we give to MPI_Send is
     * smaller than the pointer we got back from malloc().
     * 
     * Hence, in all cases, we give (return_from_malloc - LB) to MPI_Send.
     * 
     * This works fine and dandy if we only have (count==1), which we
     * rarely do.  ;-) So we really need to allocate (true_extent +
     * ((count - 1) * extent)) to get enough space for the rest.  This may
     * be more than is necessary, but it's ok.
     * 
     * Simple, no?  :-)
     * 
     */

    ompi_datatype_get_extent(dtype, &lb, &extent);
    ompi_datatype_get_true_extent(dtype, &true_lb, &true_extent);

    if (MPI_IN_PLACE == sbuf) {
        sbuf = rbuf;
        inplace_temp = (char*)malloc(true_extent + (count - 1) * extent);
        if (NULL == inplace_temp) {
            return OMPI_ERR_OUT_OF_RESOURCE;
        }
        rbuf = inplace_temp - lb;
    }

    if (size > 1) {
        free_buffer = (char*)malloc(true_extent + (count - 1) * extent);
        if (NULL == free_buffer) {
            return OMPI_ERR_OUT_OF_RESOURCE;
        }
        pml_buffer = free_buffer - lb;
    }

    /* Initialize the receive buffer. */

    if (rank == (size - 1)) {
        err = ompi_datatype_copy_content_same_ddt(dtype, count, (char*)rbuf, (char*)sbuf);
    } else {
        err = MCA_PML_CALL(recv(rbuf, count, dtype, size - 1,
                                MCA_COLL_BASE_TAG_REDUCE, comm,
                                MPI_STATUS_IGNORE));
    }
    if (MPI_SUCCESS != err) {
        if (NULL != free_buffer) {
            free(free_buffer);
        }
        return err;
    }

    /* Loop receiving and calling reduction function (C or Fortran). */

    for (i = size - 2; i >= 0; --i) {
        if (rank == i) {
            inbuf = (char*)sbuf;
        } else {
            err = MCA_PML_CALL(recv(pml_buffer, count, dtype, i,
                                    MCA_COLL_BASE_TAG_REDUCE, comm,
                                    MPI_STATUS_IGNORE));
            if (MPI_SUCCESS != err) {
                if (NULL != free_buffer) {
                    free(free_buffer);
                }
                return err;
            }

            inbuf = pml_buffer;
        }

        /* Perform the reduction */

        ompi_op_reduce(op, inbuf, rbuf, count, dtype);
    }

    if (NULL != inplace_temp) {
        err = ompi_datatype_copy_content_same_ddt(dtype, count, (char*)sbuf, inplace_temp);
        free(inplace_temp);
    }
    if (NULL != free_buffer) {
        free(free_buffer);
    }

    /* All done */

    return MPI_SUCCESS;
}


/*
 *	reduce_log_intra
 *
 *	Function:	- reduction using O(log N) algorithm
 *	Accepts:	- same as MPI_Reduce()
 *	Returns:	- MPI_SUCCESS or error code
 *
 * 
 *      Performing reduction on each dimension of the hypercube.
 *	An example for 8 procs (dimensions = 3):
 *
 *      Stage 1, reduce on X dimension,  1 -> 0, 3 -> 2, 5 -> 4, 7 -> 6
 *
 *          6----<---7		proc_0: 0+1
 *         /|       /|		proc_1: 1
 *        / |      / |		proc_2: 2+3
 *       /  |     /  |		proc_3: 3
 *      4----<---5   |		proc_4: 4+5
 *      |   2--< |---3		proc_5: 5
 *      |  /     |  /		proc_6: 6+7
 *      | /      | /		proc_7: 7
 *      |/       |/
 *      0----<---1
 *
 *	Stage 2, reduce on Y dimension, 2 -> 0, 6 -> 4
 *
 *          6--------7		proc_0: 0+1+2+3
 *         /|       /|		proc_1: 1
 *        v |      / |		proc_2: 2+3
 *       /  |     /  |		proc_3: 3
 *      4--------5   |		proc_4: 4+5+6+7
 *      |   2--- |---3		proc_5: 5
 *      |  /     |  /		proc_6: 6+7
 *      | v      | /		proc_7: 7
 *      |/       |/
 *      0--------1
 *
 *	Stage 3, reduce on Z dimension, 4 -> 0
 *
 *          6--------7		proc_0: 0+1+2+3+4+5+6+7
 *         /|       /|		proc_1: 1
 *        / |      / |		proc_2: 2+3
 *       /  |     /  |		proc_3: 3
 *      4--------5   |		proc_4: 4+5+6+7
 *      |   2--- |---3		proc_5: 5
 *      v  /     |  /		proc_6: 6+7
 *      | /      | /		proc_7: 7
 *      |/       |/
 *      0--------1
 *
 *
 */
int
mca_coll_basic_reduce_log_intra(void *sbuf, void *rbuf, int count,
                                struct ompi_datatype_t *dtype,
                                struct ompi_op_t *op,
                                int root, struct ompi_communicator_t *comm,
                                mca_coll_base_module_t *module)
{
    int i, size, rank, vrank;
    int err, peer, dim, mask;
    ptrdiff_t true_lb, true_extent, lb, extent;
    char *free_buffer = NULL;
    char *free_rbuf = NULL;
    char *pml_buffer = NULL;
    char *snd_buffer = NULL;
    char *rcv_buffer = (char*)rbuf;
    char *inplace_temp = NULL;

    /* JMS Codearound for now -- if the operations is not communative,
     * just call the linear algorithm.  Need to talk to Edgar / George
     * about fixing this algorithm here to work with non-communative
     * operations. */

    if (!ompi_op_is_commute(op)) {
        return mca_coll_basic_reduce_lin_intra(sbuf, rbuf, count, dtype,
                                               op, root, comm, module);
    }

    /* Some variables */
    size = ompi_comm_size(comm);
    rank = ompi_comm_rank(comm);
    vrank = ompi_op_is_commute(op) ? (rank - root + size) % size : rank;
    dim = comm->c_cube_dim;

    /* Allocate the incoming and resulting message buffers.  See lengthy
     * rationale above. */

    ompi_datatype_get_extent(dtype, &lb, &extent);
    ompi_datatype_get_true_extent(dtype, &true_lb, &true_extent);
    
    free_buffer = (char*)malloc(true_extent + (count - 1) * extent);
    if (NULL == free_buffer) {
        return OMPI_ERR_OUT_OF_RESOURCE;
    }
    
    pml_buffer = free_buffer - lb;
    /* read the comment about commutative operations (few lines down
     * the page) */
    if (ompi_op_is_commute(op)) {
        rcv_buffer = pml_buffer;
    }
    
    /* Allocate sendbuf in case the MPI_IN_PLACE option has been used. See lengthy
     * rationale above. */

    if (MPI_IN_PLACE == sbuf) {
        inplace_temp = (char*)malloc(true_extent + (count - 1) * extent);
        if (NULL == inplace_temp) {
            err = OMPI_ERR_OUT_OF_RESOURCE;
            goto cleanup_and_return;
        }
        sbuf = inplace_temp - lb;
        err = ompi_datatype_copy_content_same_ddt(dtype, count, (char*)sbuf, (char*)rbuf);
    }
    snd_buffer = (char*)sbuf;

    if (rank != root && 0 == (vrank & 1)) {
        /* root is the only one required to provide a valid rbuf.
         * Assume rbuf is invalid for all other ranks, so fix it up
         * here to be valid on all non-leaf ranks */
        free_rbuf = (char*)malloc(true_extent + (count - 1) * extent);
        if (NULL == free_rbuf) {
            err = OMPI_ERR_OUT_OF_RESOURCE;
            goto cleanup_and_return;
        }
        rbuf = free_rbuf - lb;
    }

    /* Loop over cube dimensions. High processes send to low ones in the
     * dimension. */

    for (i = 0, mask = 1; i < dim; ++i, mask <<= 1) {

        /* A high-proc sends to low-proc and stops. */
        if (vrank & mask) {
            peer = vrank & ~mask;
            if (ompi_op_is_commute(op)) {
                peer = (peer + root) % size;
            }

            err = MCA_PML_CALL(send(snd_buffer, count,
                                    dtype, peer, MCA_COLL_BASE_TAG_REDUCE,
                                    MCA_PML_BASE_SEND_STANDARD, comm));
            if (MPI_SUCCESS != err) {
                goto cleanup_and_return;
            }
            snd_buffer = (char*)rbuf;
            break;
        }

        /* A low-proc receives, reduces, and moves to a higher
         * dimension. */

        else {
            peer = vrank | mask;
            if (peer >= size) {
                continue;
            }
            if (ompi_op_is_commute(op)) {
                peer = (peer + root) % size;
            }

            /* Most of the time (all except the first one for commutative
             * operations) we receive in the user provided buffer
             * (rbuf). But the exception is here to allow us to dont have
             * to copy from the sbuf to a temporary location. If the
             * operation is commutative we dont care in which order we
             * apply the operation, so for the first time we can receive
             * the data in the pml_buffer and then apply to operation
             * between this buffer and the user provided data. */

            err = MCA_PML_CALL(recv(rcv_buffer, count, dtype, peer,
                                    MCA_COLL_BASE_TAG_REDUCE, comm,
                                    MPI_STATUS_IGNORE));
            if (MPI_SUCCESS != err) {
                goto cleanup_and_return;
            }
            /* Perform the operation. The target is always the user
             * provided buffer We do the operation only if we receive it
             * not in the user buffer */
            if (snd_buffer != sbuf) {
                /* the target buffer is the locally allocated one */
                ompi_op_reduce(op, rcv_buffer, pml_buffer, count, dtype);
            } else {
                /* If we're commutative, we don't care about the order of
                 * operations and we can just reduce the operations now.
                 * If we are not commutative, we have to copy the send
                 * buffer into a temp buffer (pml_buffer) and then reduce
                 * what we just received against it. */
                if (!ompi_op_is_commute(op)) {
                    ompi_datatype_copy_content_same_ddt(dtype, count, pml_buffer,
                                                   (char*)sbuf);
                    ompi_op_reduce(op, rbuf, pml_buffer, count, dtype);
                } else {
                    ompi_op_reduce(op, sbuf, pml_buffer, count, dtype);
                }
                /* now we have to send the buffer containing the computed data */
                snd_buffer = pml_buffer;
                /* starting from now we always receive in the user
                 * provided buffer */
                rcv_buffer = (char*)rbuf;
            }
        }
    }

    /* Get the result to the root if needed. */
    err = MPI_SUCCESS;
    if (0 == vrank) {
        if (root == rank) {
            ompi_datatype_copy_content_same_ddt(dtype, count, (char*)rbuf, snd_buffer);
        } else {
            err = MCA_PML_CALL(send(snd_buffer, count,
                                    dtype, root, MCA_COLL_BASE_TAG_REDUCE,
                                    MCA_PML_BASE_SEND_STANDARD, comm));
        }
    } else if (rank == root) {
        err = MCA_PML_CALL(recv(rcv_buffer, count, dtype, 0,
                                MCA_COLL_BASE_TAG_REDUCE,
                                comm, MPI_STATUS_IGNORE));
        if (rcv_buffer != rbuf) {
            ompi_op_reduce(op, rcv_buffer, rbuf, count, dtype);
        }
    }

  cleanup_and_return:
    if (NULL != inplace_temp) {
        free(inplace_temp);
    }
    if (NULL != free_buffer) {
        free(free_buffer);
    }
    if (NULL != free_rbuf) {
        free(free_rbuf);
    }

    /* All done */

    return err;
}


/*
 *	reduce_lin_inter
 *
 *	Function:	- reduction using O(N) algorithm
 *	Accepts:	- same as MPI_Reduce()
 *	Returns:	- MPI_SUCCESS or error code
 */
int
mca_coll_basic_reduce_lin_inter(void *sbuf, void *rbuf, int count,
                                struct ompi_datatype_t *dtype,
                                struct ompi_op_t *op,
                                int root, struct ompi_communicator_t *comm,
                                mca_coll_base_module_t *module)
{
    int i, err, size;
    ptrdiff_t true_lb, true_extent, lb, extent;
    char *free_buffer = NULL;
    char *pml_buffer = NULL;

    /* Initialize */
    size = ompi_comm_remote_size(comm);

    if (MPI_PROC_NULL == root) {
        /* do nothing */
        err = OMPI_SUCCESS;
    } else if (MPI_ROOT != root) {
        /* If not root, send data to the root. */
        err = MCA_PML_CALL(send(sbuf, count, dtype, root,
                                MCA_COLL_BASE_TAG_REDUCE,
                                MCA_PML_BASE_SEND_STANDARD, comm));
    } else {
        /* Root receives and reduces messages  */
        ompi_datatype_get_extent(dtype, &lb, &extent);
        ompi_datatype_get_true_extent(dtype, &true_lb, &true_extent);

        free_buffer = (char*)malloc(true_extent + (count - 1) * extent);
        if (NULL == free_buffer) {
            return OMPI_ERR_OUT_OF_RESOURCE;
        }
        pml_buffer = free_buffer - lb;


        /* Initialize the receive buffer. */
        err = MCA_PML_CALL(recv(rbuf, count, dtype, 0,
                                MCA_COLL_BASE_TAG_REDUCE, comm,
                                MPI_STATUS_IGNORE));
        if (MPI_SUCCESS != err) {
            if (NULL != free_buffer) {
                free(free_buffer);
            }
            return err;
        }

        /* Loop receiving and calling reduction function (C or Fortran). */
        for (i = 1; i < size; i++) {
            err = MCA_PML_CALL(recv(pml_buffer, count, dtype, i,
                                    MCA_COLL_BASE_TAG_REDUCE, comm,
                                    MPI_STATUS_IGNORE));
            if (MPI_SUCCESS != err) {
                if (NULL != free_buffer) {
                    free(free_buffer);
                }
                return err;
            }

            /* Perform the reduction */
            ompi_op_reduce(op, pml_buffer, rbuf, count, dtype);
        }

        if (NULL != free_buffer) {
            free(free_buffer);
        }
    }

    /* All done */
    return err;
}


/*
 *	reduce_log_inter
 *
 *	Function:	- reduction using O(N) algorithm
 *	Accepts:	- same as MPI_Reduce()
 *	Returns:	- MPI_SUCCESS or error code
 */
int
mca_coll_basic_reduce_log_inter(void *sbuf, void *rbuf, int count,
                                struct ompi_datatype_t *dtype,
                                struct ompi_op_t *op,
                                int root, struct ompi_communicator_t *comm,
                                mca_coll_base_module_t *module)
{
    return OMPI_ERR_NOT_IMPLEMENTED;
}