1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416
|
/*
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include "coll_spacc.h"
#include "mpi.h"
#include "ompi/constants.h"
#include "opal/util/bit_ops.h"
#include "ompi/datatype/ompi_datatype.h"
#include "ompi/communicator/communicator.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/mca/coll/base/coll_base_functions.h"
#include "ompi/mca/coll/base/coll_tags.h"
#include "ompi/mca/coll/base/coll_base_util.h"
#include "ompi/mca/pml/pml.h"
#include "ompi/op/op.h"
/*
* mca_coll_spacc_reduce_intra_redscat_gather
*
* Function: Reduce using Rabenseifner's algorithm.
* Accepts: Same arguments as MPI_Reduce
* Returns: MPI_SUCCESS or error code
*
* Description: an implementation of Rabenseifner's reduce algorithm [1, 2].
* [1] Rajeev Thakur, Rolf Rabenseifner and William Gropp.
* Optimization of Collective Communication Operations in MPICH //
* The Int. Journal of High Performance Computing Applications. Vol 19,
* Issue 1, pp. 49--66.
* [2] http://www.hlrs.de/mpi/myreduce.html.
*
* This algorithm is a combination of a reduce-scatter implemented with
* recursive vector halving and recursive distance doubling, followed either
* by a binomial tree gather [1].
*
* Step 1. If the number of processes is not a power of two, reduce it to
* the nearest lower power of two (p' = 2^{\floor{\log_2 p}})
* by removing r = p - p' extra processes as follows. In the first 2r processes
* (ranks 0 to 2r - 1), all the even ranks send the second half of the input
* vector to their right neighbor (rank + 1), and all the odd ranks send
* the first half of the input vector to their left neighbor (rank - 1).
* The even ranks compute the reduction on the first half of the vector and
* the odd ranks compute the reduction on the second half. The odd ranks then
* send the result to their left neighbors (the even ranks). As a result,
* the even ranks among the first 2r processes now contain the reduction with
* the input vector on their right neighbors (the odd ranks). These odd ranks
* do not participate in the rest of the algorithm, which leaves behind
* a power-of-two number of processes. The first r even-ranked processes and
* the last p - 2r processes are now renumbered from 0 to p' - 1.
*
* Step 2. The remaining processes now perform a reduce-scatter by using
* recursive vector halving and recursive distance doubling. The even-ranked
* processes send the second half of their buffer to rank + 1 and the odd-ranked
* processes send the first half of their buffer to rank - 1. All processes
* then compute the reduction between the local buffer and the received buffer.
* In the next log_2(p') - 1 steps, the buffers are recursively halved, and the
* distance is doubled. At the end, each of the p' processes has 1 / p' of the
* total reduction result.
*
* Step 3. A binomial tree gather is performed by using recursive vector
* doubling and distance halving. In the non-power-of-two case, if the root
* happens to be one of those odd-ranked processes that would normally
* be removed in the first step, then the role of this process and process 0
* are interchanged.
*
* Limitations:
* count >= 2^{\floor{\log_2 p}}
* commutative operations only
* intra-communicators only
*
* Memory requirements (per process):
* rank != root: 2 * count * typesize + 4 * log_2(p) * sizeof(int) = O(count)
* rank == root: count * typesize + 4 * log_2(p) * sizeof(int) = O(count)
*
* Recommendations: root = 0, otherwise it is required additional steps
* in the root process.
*/
int mca_coll_spacc_reduce_intra_redscat_gather(
const void *sbuf, void *rbuf, int count, struct ompi_datatype_t *dtype,
struct ompi_op_t *op, int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int comm_size = ompi_comm_size(comm);
int rank = ompi_comm_rank(comm);
opal_output_verbose(30, mca_coll_spacc_stream,
"coll:spacc:reduce_intra_redscat_gather: rank %d/%d, root %d",
rank, comm_size, root);
/* Find nearest power-of-two less than or equal to comm_size */
int nsteps = opal_hibit(comm_size, comm->c_cube_dim + 1); /* ilog2(comm_size) */
assert(nsteps >= 0);
int nprocs_pof2 = 1 << nsteps; /* flp2(comm_size) */
if (count < nprocs_pof2 || !ompi_op_is_commute(op)) {
opal_output_verbose(20, mca_coll_spacc_stream,
"coll:spacc:reduce_intra_redscat_gather: rank %d/%d count %d switching to base reduce",
rank, comm_size, count);
return ompi_coll_base_reduce_intra_basic_linear(sbuf, rbuf, count, dtype,
op, root, comm, module);
}
int err = MPI_SUCCESS;
int *rindex = NULL, *rcount = NULL, *sindex = NULL, *scount = NULL;
ptrdiff_t lb, extent, dsize, gap;
ompi_datatype_get_extent(dtype, &lb, &extent);
dsize = opal_datatype_span(&dtype->super, count, &gap);
/* Temporary buffer for receiving messages */
char *tmp_buf = NULL;
char *tmp_buf_raw = (char *)malloc(dsize);
if (NULL == tmp_buf_raw)
return OMPI_ERR_OUT_OF_RESOURCE;
tmp_buf = tmp_buf_raw - gap;
char *rbuf_raw = NULL;
if (rank != root) {
rbuf_raw = (char *)malloc(dsize);
if (NULL == rbuf_raw) {
err = OMPI_ERR_OUT_OF_RESOURCE;
goto cleanup_and_return;
}
rbuf = rbuf_raw - gap;
}
if ((rank != root) || (sbuf != MPI_IN_PLACE)) {
/* Copy sbuf to rbuf */
err = ompi_datatype_copy_content_same_ddt(dtype, count, (char *)rbuf,
(char *)sbuf);
}
/*
* Step 1. Reduce the number of processes to the nearest lower power of two
* p' = 2^{\floor{\log_2 p}} by removing r = p - p' processes.
* 1. In the first 2r processes (ranks 0 to 2r - 1), all the even ranks send
* the second half of the input vector to their right neighbor (rank + 1)
* and all the odd ranks send the first half of the input vector to their
* left neighbor (rank - 1).
* 2. All 2r processes compute the reduction on their half.
* 3. The odd ranks then send the result to their left neighbors
* (the even ranks).
*
* The even ranks (0 to 2r - 1) now contain the reduction with the input
* vector on their right neighbors (the odd ranks). The first r even
* processes and the p - 2r last processes are renumbered from
* 0 to 2^{\floor{\log_2 p}} - 1. These odd ranks do not participate in the
* rest of the algorithm.
*/
int vrank, step, wsize;
int nprocs_rem = comm_size - nprocs_pof2;
if (rank < 2 * nprocs_rem) {
int count_lhalf = count / 2;
int count_rhalf = count - count_lhalf;
if (rank % 2 != 0) {
/*
* Odd process -- exchange with rank - 1
* Send the left half of the input vector to the left neighbor,
* Recv the right half of the input vector from the left neighbor
*/
err = ompi_coll_base_sendrecv(rbuf, count_lhalf, dtype, rank - 1,
MCA_COLL_BASE_TAG_REDUCE,
(char *)tmp_buf + (ptrdiff_t)count_lhalf * extent,
count_rhalf, dtype, rank - 1,
MCA_COLL_BASE_TAG_REDUCE, comm,
MPI_STATUS_IGNORE, rank);
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
/* Reduce on the right half of the buffers (result in rbuf) */
ompi_op_reduce(op, (char *)tmp_buf + (ptrdiff_t)count_lhalf * extent,
(char *)rbuf + count_lhalf * extent, count_rhalf, dtype);
/* Send the right half to the left neighbor */
err = MCA_PML_CALL(send((char *)rbuf + (ptrdiff_t)count_lhalf * extent,
count_rhalf, dtype, rank - 1,
MCA_COLL_BASE_TAG_REDUCE,
MCA_PML_BASE_SEND_STANDARD, comm));
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
/* This process does not pariticipate in recursive doubling phase */
vrank = -1;
} else {
/*
* Even process -- exchange with rank + 1
* Send the right half of the input vector to the right neighbor,
* Recv the left half of the input vector from the right neighbor
*/
err = ompi_coll_base_sendrecv((char *)rbuf + (ptrdiff_t)count_lhalf * extent,
count_rhalf, dtype, rank + 1,
MCA_COLL_BASE_TAG_REDUCE,
tmp_buf, count_lhalf, dtype, rank + 1,
MCA_COLL_BASE_TAG_REDUCE, comm,
MPI_STATUS_IGNORE, rank);
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
/* Reduce on the right half of the buffers (result in rbuf) */
ompi_op_reduce(op, tmp_buf, rbuf, count_lhalf, dtype);
/* Recv the right half from the right neighbor */
err = MCA_PML_CALL(recv((char *)rbuf + (ptrdiff_t)count_lhalf * extent,
count_rhalf, dtype, rank + 1,
MCA_COLL_BASE_TAG_REDUCE, comm,
MPI_STATUS_IGNORE));
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
vrank = rank / 2;
}
} else { /* rank >= 2 * nprocs_rem */
vrank = rank - nprocs_rem;
}
/*
* Step 2. Reduce-scatter implemented with recursive vector halving and
* recursive distance doubling. We have p' = 2^{\floor{\log_2 p}}
* power-of-two number of processes with new ranks (vrank) and result in rbuf.
*
* The even-ranked processes send the right half of their buffer to rank + 1
* and the odd-ranked processes send the left half of their buffer to
* rank - 1. All processes then compute the reduction between the local
* buffer and the received buffer. In the next \log_2(p') - 1 steps, the
* buffers are recursively halved, and the distance is doubled. At the end,
* each of the p' processes has 1 / p' of the total reduction result.
*/
rindex = malloc(sizeof(*rindex) * nsteps); /* O(\log_2(p)) */
sindex = malloc(sizeof(*sindex) * nsteps);
rcount = malloc(sizeof(*rcount) * nsteps);
scount = malloc(sizeof(*scount) * nsteps);
if (NULL == rindex || NULL == sindex || NULL == rcount || NULL == scount) {
err = OMPI_ERR_OUT_OF_RESOURCE;
goto cleanup_and_return;
}
if (vrank != -1) {
step = 0;
wsize = count;
sindex[0] = rindex[0] = 0;
for (int mask = 1; mask < nprocs_pof2; mask <<= 1) {
/*
* On each iteration: rindex[step] = sindex[step] -- begining of the
* current window. Length of the current window is storded in wsize.
*/
int vdest = vrank ^ mask;
/* Translate vdest virtual rank to real rank */
int dest = (vdest < nprocs_rem) ? vdest * 2 : vdest + nprocs_rem;
if (rank < dest) {
/*
* Recv into the left half of the current window, send the right
* half of the window to the peer (perform reduce on the left
* half of the current window)
*/
rcount[step] = wsize / 2;
scount[step] = wsize - rcount[step];
sindex[step] = rindex[step] + rcount[step];
} else {
/*
* Recv into the right half of the current window, send the left
* half of the window to the peer (perform reduce on the right
* half of the current window)
*/
scount[step] = wsize / 2;
rcount[step] = wsize - scount[step];
rindex[step] = sindex[step] + scount[step];
}
/* Send part of data from the rbuf, recv into the tmp_buf */
err = ompi_coll_base_sendrecv((char *)rbuf + (ptrdiff_t)sindex[step] * extent,
scount[step], dtype, dest,
MCA_COLL_BASE_TAG_REDUCE,
(char *)tmp_buf + (ptrdiff_t)rindex[step] * extent,
rcount[step], dtype, dest,
MCA_COLL_BASE_TAG_REDUCE, comm,
MPI_STATUS_IGNORE, rank);
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
/* Local reduce: rbuf[] = tmp_buf[] <op> rbuf[] */
ompi_op_reduce(op, (char *)tmp_buf + (ptrdiff_t)rindex[step] * extent,
(char *)rbuf + (ptrdiff_t)rindex[step] * extent,
rcount[step], dtype);
/* Move the current window to the received message */
if (step + 1 < nsteps) {
rindex[step + 1] = rindex[step];
sindex[step + 1] = rindex[step];
wsize = rcount[step];
step++;
}
}
}
/*
* Assertion: each process has 1 / p' of the total reduction result:
* rcount[nsteps - 1] elements in the rbuf[rindex[nsteps - 1], ...].
*/
/*
* Setup the root process for gather operation.
* Case 1: root < 2r and root is odd -- root process was excluded on step 1
* Recv data from process 0, vroot = 0, vrank = 0
* Case 2: root < 2r and root is even: vroot = root / 2
* Case 3: root >= 2r: vroot = root - r
*/
int vroot = 0;
if (root < 2 * nprocs_rem) {
if (root % 2 != 0) {
vroot = 0;
if (rank == root) {
/*
* Case 1: root < 2r and root is odd -- root process was
* excluded on step 1 (newrank == -1).
* Recv a data from the process 0.
*/
rindex[0] = 0;
step = 0, wsize = count;
for (int mask = 1; mask < nprocs_pof2; mask *= 2) {
rcount[step] = wsize / 2;
scount[step] = wsize - rcount[step];
rindex[step] = 0;
sindex[step] = rcount[step];
step++;
wsize /= 2;
}
err = MCA_PML_CALL(recv(rbuf, rcount[nsteps - 1], dtype, 0,
MCA_COLL_BASE_TAG_REDUCE, comm,
MPI_STATUS_IGNORE));
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
vrank = 0;
} else if (vrank == 0) {
/* Send a data to the root */
err = MCA_PML_CALL(send(rbuf, rcount[nsteps - 1], dtype, root,
MCA_COLL_BASE_TAG_REDUCE,
MCA_PML_BASE_SEND_STANDARD, comm));
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
vrank = -1;
}
} else {
/* Case 2: root < 2r and a root is even: vroot = root / 2 */
vroot = root / 2;
}
} else {
/* Case 3: root >= 2r: newroot = root - r */
vroot = root - nprocs_rem;
}
/*
* Step 3. Gather result at the vroot by the binomial tree algorithm.
* Each process has 1 / p' of the total reduction result:
* rcount[nsteps - 1] elements in the rbuf[rindex[nsteps - 1], ...].
* All exchanges are executed in reverse order relative
* to recursive doubling (previous step).
*/
if (vrank != -1) {
int vdest_tree, vroot_tree;
step = nsteps - 1; /* step = ilog2(p') - 1 */
for (int mask = nprocs_pof2 >> 1; mask > 0; mask >>= 1) {
int vdest = vrank ^ mask;
/* Translate vdest virtual rank to real rank */
int dest = (vdest < nprocs_rem) ? vdest * 2 : vdest + nprocs_rem;
if ((vdest == 0) && (root < 2 * nprocs_rem) && (root % 2 != 0))
dest = root;
vdest_tree = vdest >> step;
vdest_tree <<= step;
vroot_tree = vroot >> step;
vroot_tree <<= step;
if (vdest_tree == vroot_tree) {
/* Send data from rbuf and exit */
err = MCA_PML_CALL(send((char *)rbuf + (ptrdiff_t)rindex[step] * extent,
rcount[step], dtype, dest,
MCA_COLL_BASE_TAG_REDUCE,
MCA_PML_BASE_SEND_STANDARD, comm));
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
break;
} else {
/* Recv and continue */
err = MCA_PML_CALL(recv((char *)rbuf + (ptrdiff_t)sindex[step] * extent,
scount[step], dtype, dest,
MCA_COLL_BASE_TAG_REDUCE, comm,
MPI_STATUS_IGNORE));
if (MPI_SUCCESS != err) { goto cleanup_and_return; }
}
step--;
}
}
cleanup_and_return:
if (NULL != tmp_buf_raw)
free(tmp_buf_raw);
if (NULL != rbuf_raw)
free(rbuf_raw);
if (NULL != rindex)
free(rindex);
if (NULL != sindex)
free(sindex);
if (NULL != rcount)
free(rcount);
if (NULL != scount)
free(scount);
return err;
}
|