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/*
* Copyright (C) by Argonne National Laboratory
* See COPYRIGHT in top-level directory
*/
#include "adio.h"
#include "adio_extern.h"
void ADIOI_GEN_ReadStrided_naive(ADIO_File fd, void *buf, int count,
MPI_Datatype buftype, int file_ptr_type,
ADIO_Offset offset, ADIO_Status * status, int
*error_code)
{
/* offset is in units of etype relative to the filetype. */
ADIOI_Flatlist_node *flat_buf, *flat_file;
ADIO_Offset size, brd_size, frd_size = 0, req_len, sum;
int b_index;
int n_etypes_in_filetype;
ADIO_Offset n_filetypes, etype_in_filetype;
ADIO_Offset abs_off_in_filetype = 0;
MPI_Count bufsize, filetype_size, buftype_size, size_in_filetype;
ADIO_Offset etype_size;
MPI_Aint lb, filetype_extent, buftype_extent;
int buf_count, buftype_is_contig, filetype_is_contig;
ADIO_Offset userbuf_off;
ADIO_Offset off, req_off, disp, end_offset = 0, start_off;
ADIO_Status status1;
*error_code = MPI_SUCCESS; /* changed below if error */
ADIOI_Datatype_iscontig(buftype, &buftype_is_contig);
ADIOI_Datatype_iscontig(fd->filetype, &filetype_is_contig);
MPI_Type_size_x(fd->filetype, &filetype_size);
if (!filetype_size) {
#ifdef HAVE_STATUS_SET_BYTES
MPIR_Status_set_bytes(status, buftype, 0);
#endif
*error_code = MPI_SUCCESS;
return;
}
MPI_Type_get_extent(fd->filetype, &lb, &filetype_extent);
MPI_Type_size_x(buftype, &buftype_size);
MPI_Type_get_extent(buftype, &lb, &buftype_extent);
etype_size = fd->etype_size;
ADIOI_Assert((buftype_size * count) == ((ADIO_Offset) buftype_size * (ADIO_Offset) count));
bufsize = buftype_size * count;
/* contiguous in buftype and filetype is handled elsewhere */
if (!buftype_is_contig && filetype_is_contig) {
int b_count;
/* noncontiguous in memory, contiguous in file. */
flat_buf = ADIOI_Flatten_and_find(buftype);
off = (file_ptr_type == ADIO_INDIVIDUAL) ? fd->fp_ind : fd->disp + etype_size * offset;
start_off = off;
end_offset = off + bufsize - 1;
/* if atomicity is true, lock (exclusive) the region to be accessed */
if ((fd->atomicity) && ADIO_Feature(fd, ADIO_LOCKS)) {
ADIOI_WRITE_LOCK(fd, start_off, SEEK_SET, end_offset - start_off + 1);
}
/* for each region in the buffer, grab the data and put it in
* place
*/
for (b_count = 0; b_count < count; b_count++) {
for (b_index = 0; b_index < flat_buf->count; b_index++) {
userbuf_off = (ADIO_Offset) b_count *(ADIO_Offset) buftype_extent +
flat_buf->indices[b_index];
req_off = off;
req_len = flat_buf->blocklens[b_index];
ADIOI_Assert((((ADIO_Offset) (uintptr_t) buf) + userbuf_off) ==
(ADIO_Offset) (uintptr_t) ((uintptr_t) buf + userbuf_off));
ADIOI_Assert(req_len == (int) req_len);
ADIO_ReadContig(fd,
(char *) buf + userbuf_off,
req_len,
MPI_BYTE, ADIO_EXPLICIT_OFFSET, req_off, &status1, error_code);
if (*error_code != MPI_SUCCESS)
return;
/* off is (potentially) used to save the final offset later */
off += flat_buf->blocklens[b_index];
}
}
if ((fd->atomicity) && ADIO_Feature(fd, ADIO_LOCKS)) {
ADIOI_UNLOCK(fd, start_off, SEEK_SET, end_offset - start_off + 1);
}
if (file_ptr_type == ADIO_INDIVIDUAL)
fd->fp_ind = off;
}
else { /* noncontiguous in file */
int f_index, st_index = 0;
ADIO_Offset st_n_filetypes;
ADIO_Offset st_frd_size;
int flag;
/* First we're going to calculate a set of values for use in all
* the noncontiguous in file cases:
* start_off - starting byte position of data in file
* end_offset - last byte offset to be acessed in the file
* st_n_filetypes - how far into the file we start in terms of
* whole filetypes
* st_index - index of block in first filetype that we will be
* starting in (?)
* st_frd_size - size of the data in the first filetype block
* that we will read (accounts for being part-way
* into reading this block of the filetype
*
*/
flat_file = ADIOI_Flatten_and_find(fd->filetype);
disp = fd->disp;
if (file_ptr_type == ADIO_INDIVIDUAL) {
start_off = fd->fp_ind; /* in bytes */
n_filetypes = -1;
flag = 0;
while (!flag) {
n_filetypes++;
for (f_index = 0; f_index < flat_file->count; f_index++) {
if (disp + flat_file->indices[f_index] +
n_filetypes * (ADIO_Offset) filetype_extent +
flat_file->blocklens[f_index] >= start_off) {
/* this block contains our starting position */
st_index = f_index;
frd_size = disp + flat_file->indices[f_index] +
n_filetypes * (ADIO_Offset) filetype_extent +
flat_file->blocklens[f_index] - start_off;
flag = 1;
break;
}
}
}
} else {
n_etypes_in_filetype = filetype_size / etype_size;
n_filetypes = offset / n_etypes_in_filetype;
etype_in_filetype = (int) (offset % n_etypes_in_filetype);
size_in_filetype = (unsigned) etype_in_filetype *(unsigned) etype_size;
sum = 0;
for (f_index = 0; f_index < flat_file->count; f_index++) {
sum += flat_file->blocklens[f_index];
if (sum > size_in_filetype) {
st_index = f_index;
frd_size = sum - size_in_filetype;
abs_off_in_filetype = flat_file->indices[f_index] +
size_in_filetype - (sum - flat_file->blocklens[f_index]);
break;
}
}
/* abs. offset in bytes in the file */
start_off = disp + n_filetypes * (ADIO_Offset) filetype_extent + abs_off_in_filetype;
}
st_frd_size = frd_size;
st_n_filetypes = n_filetypes;
/* start_off, st_n_filetypes, st_index, and st_frd_size are
* all calculated at this point
*/
/* Calculate end_offset, the last byte-offset that will be accessed.
* e.g., if start_off=0 and 100 bytes to be read, end_offset=99
*/
userbuf_off = 0;
f_index = st_index;
off = start_off;
frd_size = MPL_MIN(st_frd_size, bufsize);
while (userbuf_off < bufsize) {
userbuf_off += frd_size;
end_offset = off + frd_size - 1;
if (f_index < (flat_file->count - 1))
f_index++;
else {
f_index = 0;
n_filetypes++;
}
off = disp + flat_file->indices[f_index] + n_filetypes * (ADIO_Offset) filetype_extent;
frd_size = MPL_MIN(flat_file->blocklens[f_index], bufsize - (unsigned) userbuf_off);
}
/* End of calculations. At this point the following values have
* been calculated and are ready for use:
* - start_off
* - end_offset
* - st_n_filetypes
* - st_index
* - st_frd_size
*/
/* if atomicity is true, lock (exclusive) the region to be accessed */
if ((fd->atomicity) && ADIO_Feature(fd, ADIO_LOCKS)) {
ADIOI_WRITE_LOCK(fd, start_off, SEEK_SET, end_offset - start_off + 1);
}
if (buftype_is_contig && !filetype_is_contig) {
/* contiguous in memory, noncontiguous in file. should be the
* most common case.
*/
userbuf_off = 0;
f_index = st_index;
off = start_off;
n_filetypes = st_n_filetypes;
frd_size = MPL_MIN(st_frd_size, bufsize);
/* while there is still space in the buffer, read more data */
while (userbuf_off < bufsize) {
if (frd_size) {
/* TYPE_UB and TYPE_LB can result in
* frd_size = 0. save system call in such cases */
req_off = off;
req_len = frd_size;
ADIOI_Assert((((ADIO_Offset) (uintptr_t) buf) + userbuf_off) ==
(ADIO_Offset) (uintptr_t) ((uintptr_t) buf + userbuf_off));
ADIOI_Assert(req_len == (int) req_len);
ADIO_ReadContig(fd,
(char *) buf + userbuf_off,
req_len,
MPI_BYTE, ADIO_EXPLICIT_OFFSET, req_off, &status1, error_code);
if (*error_code != MPI_SUCCESS)
return;
}
userbuf_off += frd_size;
if (off + frd_size < disp + flat_file->indices[f_index] +
flat_file->blocklens[f_index] + n_filetypes * (ADIO_Offset) filetype_extent) {
/* important that this value be correct, as it is
* used to set the offset in the fd near the end of
* this function.
*/
off += frd_size;
}
/* did not reach end of contiguous block in filetype.
* no more I/O needed. off is incremented by frd_size.
*/
else {
if (f_index < (flat_file->count - 1))
f_index++;
else {
f_index = 0;
n_filetypes++;
}
off = disp + flat_file->indices[f_index] +
n_filetypes * (ADIO_Offset) filetype_extent;
frd_size = MPL_MIN(flat_file->blocklens[f_index],
bufsize - (unsigned) userbuf_off);
}
}
} else {
ADIO_Offset i_offset, tmp_bufsize = 0;
/* noncontiguous in memory as well as in file */
flat_buf = ADIOI_Flatten_and_find(buftype);
b_index = buf_count = 0;
i_offset = flat_buf->indices[0];
f_index = st_index;
off = start_off;
n_filetypes = st_n_filetypes;
frd_size = st_frd_size;
brd_size = flat_buf->blocklens[0];
/* while we haven't read size * count bytes, keep going */
while (tmp_bufsize < bufsize) {
ADIO_Offset new_brd_size = brd_size, new_frd_size = frd_size;
size = MPL_MIN(frd_size, brd_size);
/* keep max of a single read amount <= INT_MAX */
size = MPL_MIN(size, INT_MAX);
if (size) {
req_off = off;
req_len = size;
userbuf_off = i_offset;
ADIOI_Assert((((ADIO_Offset) (uintptr_t) buf) + userbuf_off) ==
(ADIO_Offset) (uintptr_t) ((uintptr_t) buf + userbuf_off));
ADIOI_Assert(req_len == (int) req_len);
ADIO_ReadContig(fd,
(char *) buf + userbuf_off,
req_len,
MPI_BYTE, ADIO_EXPLICIT_OFFSET, req_off, &status1, error_code);
if (*error_code != MPI_SUCCESS)
return;
}
if (size == frd_size) {
/* reached end of contiguous block in file */
if (f_index < (flat_file->count - 1))
f_index++;
else {
f_index = 0;
n_filetypes++;
}
off = disp + flat_file->indices[f_index] +
n_filetypes * (ADIO_Offset) filetype_extent;
new_frd_size = flat_file->blocklens[f_index];
if (size != brd_size) {
i_offset += size;
new_brd_size -= size;
}
}
if (size == brd_size) {
/* reached end of contiguous block in memory */
b_index = (b_index + 1) % flat_buf->count;
buf_count++;
i_offset = buftype_extent * (buf_count / flat_buf->count) +
flat_buf->indices[b_index];
new_brd_size = flat_buf->blocklens[b_index];
if (size != frd_size) {
off += size;
new_frd_size -= size;
}
}
tmp_bufsize += size;
frd_size = new_frd_size;
brd_size = new_brd_size;
}
}
/* unlock the file region if we locked it */
if ((fd->atomicity) && ADIO_Feature(fd, ADIO_LOCKS)) {
ADIOI_UNLOCK(fd, start_off, SEEK_SET, end_offset - start_off + 1);
}
if (file_ptr_type == ADIO_INDIVIDUAL)
fd->fp_ind = off;
} /* end of (else noncontiguous in file) */
fd->fp_sys_posn = -1; /* mark it as invalid. */
#ifdef HAVE_STATUS_SET_BYTES
MPIR_Status_set_bytes(status, buftype, bufsize);
/* This is a temporary way of filling in status. The right way is to
* keep track of how much data was actually read and placed in buf
*/
#endif
}
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