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Troubleshooting
===============
Launching MPI jobs can be a complex process that involves many moving parts.
This section attempts to provide solutions to some of the most common
problems users encounter.
Messages about missing symbols
------------------------------
Open MPI loads a lot of plugins (sometimes called "components" or
"modules") at run time. Sometimes a plugin can fail to load because it
can't resolve all the symbols that it needs. There are a few reasons
why this can happen.
* The plugin is for a different version of Open MPI. :ref:`See this
section <building-open-mpi-install-overwrite-label>` for an
explanation of how Open MPI might try to open the "wrong" plugins.
* An application is trying to manually dynamically open ``libmpi`` in
a private symbol space. For example, if an application is not
linked against ``libmpi``, but rather calls something like this:
.. code-block:: c
/* This is a Linux example |mdash| the issue is similar/the same on other
operating systems */
handle = dlopen("libmpi.so", RTLD_NOW | RTLD_LOCAL);
This is due to some deep run-time linker voodoo |mdash| it is
discussed towards the end of `this post to the Open MPI developer's
list
<https://www.mail-archive.com/devel@lists.open-mpi.org/msg07981.html>`_.
Briefly, the issue is this:
#. The dynamic library ``libmpi`` is opened in a "local" symbol
space.
#. ``MPI_INIT`` is invoked, which tries to open Open MPI's plugins.
#. Open MPI's plugins rely on symbols in ``libmpi`` (and other Open
MPI support libraries); these symbols must be resolved when the
plugin is loaded.
#. However, since ``libmpi`` was opened in a "local" symbol space,
its symbols are not available to the plugins that it opens.
#. Hence, the plugin fails to load because it can't resolve all of
its symbols, and displays a warning message to that effect.
The ultimate fix for this issue is a bit bigger than Open MPI,
unfortunately |mdash| it's a POSIX issue (as briefly described in the
devel mailing list posting, above).
However, there are several common workarounds:
* Dynamically open ``libmpi`` in a public / global symbol scope
|mdash| not a private / local scope. This will enable
``libmpi``'s symbols to be available for resolution when Open MPI
dynamically opens its plugins.
* If ``libmpi`` is opened as part of some underlying framework where
it is not possible to change the private / local scope to a public
/ global scope, then dynamically open ``libmpi`` in a public /
global scope before invoking the underlying framework. This
sounds a little gross (and it is), but at least the run-time
linker is smart enough to not load ``libmpi`` twice |mdash| but it
does keeps ``libmpi`` in a public scope.
* Use the ``--disable-dlopen`` or ``--disable-mca-dso`` options to
Open MPI's ``configure`` script (see this TODO NONEXISTENT FAQ entry
for more details on these
options). These options slurp all of Open MPI's plugins up in to
``libmpi`` |mdash| meaning that the plugins physically reside in
``libmpi`` and will not be dynamically opened at run time.
* Build Open MPI as a static library by configuring Open MPI with
``--disable-shared`` and ``--enable-static``. This has the same
effect as ``--disable-dlopen``, but it also makes ``libmpi.a`` (as
opposed to a shared library).
Errors about missing libraries
------------------------------
When building Open MPI with the compilers that have libraries in
non-default search path locations, you may see errors about those
compiler's support libraries when trying to launch MPI applications if
their corresponding environments were not setup properly.
For example, you may see warnings similar to the following:
.. code-block:: sh
# With the Intel compiler suite
shell$ mpirun -n 1 --host node1.example.com mpi_hello
prted: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory
--------------------------------------------------------------------------
A daemon (pid 11893) died unexpectedly with status 127 while
attempting to launch so we are aborting.
...more error messages...
# With the PGI compiler suite
shell$ mpirun -n 1 --host node1.example.com mpi_hello
prted: error while loading shared libraries: libpgcc.so: cannot open shared object file: No such file or directory
...more error messages...
# With the PathScale compiler suite
shell$ mpirun -n 1 --host node1.example.com mpi_hello
prted: error while loading shared libraries: libmv.so: cannot open shared object file: No such file or directory
...more error messages...
Specifically, Open MPI first attempts to launch a "helper" daemon
``prted`` on ``node1.example.com``, but it failed because one of
``prted``'s dependent libraries was not able to be found. The
libraries shown above (``libimf.so``, ``libpgcc.so``, and
``libmv.so``) are specific to their compiler suites (Intel, PGI, and
PathScale, respectively). As such, it is likely that the user did not
setup the compiler library in their environment properly on this node.
Double check that you have setup the appropriate compiler environment
on the target node, for both interactive and non-interactive logins.
.. note:: It is a common error to ensure that the compiler environment
is setup properly for *interactive* logins, but not for
*non-interactive* logins.
Here's an example of a user-compiled MPI application working fine
locally, but failing when invoked non-interactively on a remote node:
.. code-block:: sh
# Compile a trivial MPI application
head_node$ cd $HOME
head_node$ mpicc mpi_hello.c -o mpi_hello
# Run it locally; it works fine
head_node$ ./mpi_hello
Hello world, I am 0 of 1.
# Run it remotely interactively; it works fine
head_node$ ssh node2.example.com
Welcome to node2.
node2$ ./mpi_hello
Hello world, I am 0 of 1.
node2$ exit
# Run it remotely *NON*-interactively; it fails
head_node$ ssh node2.example.com $HOME/mpi_hello
mpi_hello: error while loading shared libraries: libimf.so: cannot open shared object file: No such file or directory
In cases like this, check your shell script startup files and verify
that the appropriate compiler environment is setup properly for
non-interactive logins.
Problems when running across multiple hosts
-------------------------------------------
When you are able to run MPI jobs on a single host, but fail to run
them across multiple hosts, try the following:
#. Ensure that your launcher is able to launch across multiple hosts.
For example, if you are using ``ssh``, try to ``ssh`` to each
remote host and ensure that you are not prompted for a password.
For example:
.. code-block::
shell$ ssh remotehost hostname
remotehost
If you are unable to launch across multiple hosts, check that your
SSH keys are setup properly. Or, if you are running in a managed
environment, such as in a Slurm, Torque, or other job launcher,
check that you have reserved enough hosts, are running in an
allocated job, etc.
#. Ensure that your ``PATH`` and ``LD_LIBRARY_PATH`` are set correctly
on each remote host on which you are trying to run. For example,
with ``ssh``:
.. code-block::
shell$ ssh remotehost env | grep -i path
PATH=...path on the remote host...
LD_LIBRARY_PATH=...LD library path on the remote host...
If your ``PATH`` or ``LD_LIBRARY_PATH`` are not set properly, see
:ref:`this section <running-prerequisites-label>` for
the correct values. Keep in mind that it is fine to have multiple
Open MPI installations installed on a machine; the *first* Open MPI
installation found by ``PATH`` and ``LD_LIBARY_PATH`` is the one
that matters.
#. Run a simple, non-MPI job across multiple hosts. This verifies
that the Open MPI run-time system is functioning properly across
multiple hosts. For example, try running the ``hostname`` command:
.. code-block::
shell$ mpirun --host remotehost hostname
remotehost
shell$ mpirun --host remotehost,otherhost hostname
remotehost
otherhost
If you are unable to run non-MPI jobs across multiple hosts, check
for common problems such as:
#. Check your non-interactive shell setup on each remote host to
ensure that it is setting up the ``PATH`` and
``LD_LIBRARY_PATH`` properly.
#. Check that Open MPI is finding and launching the correct
version of Open MPI on the remote hosts.
#. Ensure that you have firewalling disabled between hosts (Open
MPI opens random TCP and sometimes random UDP ports between
hosts in a single MPI job).
#. Try running with the ``plm_base_verbose`` MCA parameter at level
10, which will enable extra debugging output to see how Open MPI
launches on remote hosts. For example:
.. code-block::
mpirun --mca plm_base_verbose 10 --host remotehost hostname``
#. Now run a simple MPI job across multiple hosts that does not
involve MPI communications. The ``hello_c`` program in the
``examples`` directory in the Open MPI distribution is a good
choice. This verifies that the MPI subsystem is able to initialize
and terminate properly. For example:
.. code-block::
shell$ mpirun --host remotehost,otherhost hello_c
Hello, world, I am 0 of 1, (Open MPI VERSION, package: Open MPI jsquyres@example.com Distribution, ident: VERSION, DATE)
Hello, world, I am 1 of 1, (Open MPI VERSION, package: Open MPI jsquyres@example.com Distribution, ident: VERSION, DATE)
If you are unable to run simple, non-communication MPI jobs, this
can indicate that your Open MPI installation is unable to
initialize properly on remote hosts. Double check your
non-interactive login setup on remote hosts.
#. Now run a simple MPI job across multiple hosts that does does some
simple MPI communications. The ``ring_c`` program in the
``examples`` directory in the Open MPI distribution is a good
choice. This verifies that the MPI subsystem is able to pass MPI
traffic across your network. For example:
.. code-block::
shell$ mpirun --host remotehost,otherhost ring_c
Process 0 sending 10 to 0, tag 201 (1 processes in ring)
Process 0 sent to 0
Process 0 decremented value: 9
Process 0 decremented value: 8
Process 0 decremented value: 7
Process 0 decremented value: 6
Process 0 decremented value: 5
Process 0 decremented value: 4
Process 0 decremented value: 3
Process 0 decremented value: 2
Process 0 decremented value: 1
Process 0 decremented value: 0
Process 0 exiting
If you are unable to run simple MPI jobs across multiple hosts,
this may indicate a problem with the network(s) that Open MPI is
trying to use for MPI communications. Try limiting the networks
that it uses, and/or exploring levels 1 through 3 MCA parameters
for the communications module that you are using. For example, if
you're using the TCP BTL, see the output of:
.. code-block::
ompi_info --level 3 --param btl tcp
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