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<a href="BaseFeature_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
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<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
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<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Hendrik Weisser $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Hendrik Weisser, Chris Bielow $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_KERNEL_BASEFEATURE_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_KERNEL_BASEFEATURE_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="RichPeak2D_8h.html">OpenMS/KERNEL/RichPeak2D.h</a>&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="PeptideIdentification_8h.html">OpenMS/METADATA/PeptideIdentification.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;{</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;</div>
<div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html">   55</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> :</div>
<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1RichPeak2D.html">RichPeak2D</a></div>
<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160;  {</div>
<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;</div>
<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;    <span class="keyword">typedef</span> <a class="code" href="group__Concept.html#gab685845059e8a2c92743427d9a698c70">Real</a> <a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a>;</div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">   64</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">ChargeType</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#aba0baf0503db57d523b7d2d49bc9695b">   66</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="group__Concept.html#gab685845059e8a2c92743427d9a698c70">Real</a> <a class="code" href="classOpenMS_1_1BaseFeature.html#aba0baf0503db57d523b7d2d49bc9695b">WidthType</a>;</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;</div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556">   69</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556">AnnotationState</a></div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    {</div>
<div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556aa675578619ae37796e70e401cd8ef07c">   71</a></span>&#160;      <a class="code" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556aa675578619ae37796e70e401cd8ef07c">FEATURE_ID_NONE</a>,</div>
<div class="line"><a name="l00072"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556a0dd9d8fd3a75771cb3dde82431020efb">   72</a></span>&#160;      <a class="code" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556a0dd9d8fd3a75771cb3dde82431020efb">FEATURE_ID_SINGLE</a>,</div>
<div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556a0a01b1ae53e3d211c271b5503f167144">   73</a></span>&#160;      <a class="code" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556a0a01b1ae53e3d211c271b5503f167144">FEATURE_ID_MULTIPLE_SAME</a>,</div>
<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556aaf6da6102623aef3380a5d35fe9eb614">   74</a></span>&#160;      <a class="code" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556aaf6da6102623aef3380a5d35fe9eb614">FEATURE_ID_MULTIPLE_DIVERGENT</a>,</div>
<div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556a601dd3bb9261dbacbb5d05b199fd6f90">   75</a></span>&#160;      SIZE_OF_ANNOTATIONSTATE</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;    };</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;</div>
<div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#ae1a2644b875b7d081595182dda5d662a">   78</a></span>&#160;    <span class="keyword">static</span> <span class="keyword">const</span> std::string NamesOfAnnotationState[SIZE_OF_ANNOTATIONSTATE];</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a>();</div>
<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;    <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; feature);</div>
<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;    <span class="keyword">explicit</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Peak2D.html">Peak2D</a> &amp; point);</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    <span class="keyword">explicit</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1RichPeak2D.html">RichPeak2D</a> &amp; point);</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;    ~<a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a>();</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;    <a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a> getQuality() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;    <span class="keywordtype">void</span> setQuality(<a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a> q);</div>
<div class="line"><a name="l00108"></a><span class="lineno"><a class="line" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html">  108</a></span>&#160;    <span class="keyword">struct </span><a class="code" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html">QualityLess</a> :</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;      std::binary_function&lt;BaseFeature, BaseFeature, bool&gt;</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    {</div>
<div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#aef5ac6c7652f91369894f1179dfc70bc">  111</a></span>&#160;      <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#aef5ac6c7652f91369894f1179dfc70bc">operator()</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; left, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; right)<span class="keyword"> const</span></div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;<span class="keyword">      </span>{</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;        <span class="keywordflow">return</span> left.<a class="code" href="classOpenMS_1_1BaseFeature.html#a813d0a480b9d3394e13763d4514cb239">getQuality</a>() &lt; right.<a class="code" href="classOpenMS_1_1BaseFeature.html#a813d0a480b9d3394e13763d4514cb239">getQuality</a>();</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;      }</div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;</div>
<div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#aee2ccb315b290a6bc71259ec51563fe9">  116</a></span>&#160;      <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#aee2ccb315b290a6bc71259ec51563fe9">operator()</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; left, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a> &amp; right)<span class="keyword"> const</span></div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;<span class="keyword">      </span>{</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        <span class="keywordflow">return</span> left.<a class="code" href="classOpenMS_1_1BaseFeature.html#a813d0a480b9d3394e13763d4514cb239">getQuality</a>() &lt; right;</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;      }</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;</div>
<div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#a849733831d8a9bca6dd05ffa98bb3e5d">  121</a></span>&#160;      <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#a849733831d8a9bca6dd05ffa98bb3e5d">operator()</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a> &amp; left, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; right)<span class="keyword"> const</span></div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;<span class="keyword">      </span>{</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        <span class="keywordflow">return</span> left &lt; right.<a class="code" href="classOpenMS_1_1BaseFeature.html#a813d0a480b9d3394e13763d4514cb239">getQuality</a>();</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;      }</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;</div>
<div class="line"><a name="l00126"></a><span class="lineno"><a class="line" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#a61b073be506f3e87a56b8906dbbe30bb">  126</a></span>&#160;      <span class="keywordtype">bool</span> <a class="code" href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#a61b073be506f3e87a56b8906dbbe30bb">operator()</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a> &amp; left, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a> &amp; right)<span class="keyword"> const</span></div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;<span class="keyword">      </span>{</div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;        <span class="keywordflow">return</span> left &lt; right;</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;      }</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;    };</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;    WidthType getWidth() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;    <span class="keywordtype">void</span> setWidth(WidthType fwhm);</div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;    <span class="keyword">const</span> ChargeType &amp; getCharge() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;    <span class="keywordtype">void</span> setCharge(<span class="keyword">const</span> ChargeType &amp; ch);</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;    <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; rhs);</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;    <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;    <span class="keywordtype">bool</span> operator!=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1BaseFeature.html">BaseFeature</a> &amp; rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;    <span class="keyword">const</span> std::vector&lt;PeptideIdentification&gt; &amp; getPeptideIdentifications() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;    std::vector&lt;PeptideIdentification&gt; &amp; getPeptideIdentifications();</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    <span class="keywordtype">void</span> setPeptideIdentifications(<span class="keyword">const</span> std::vector&lt;PeptideIdentification&gt; &amp; peptides);</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;    AnnotationState getAnnotationState() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;</div>
<div class="line"><a name="l00169"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#aae57ec1341e9cb073065c3829ea429e2">  169</a></span>&#160;    <a class="code" href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">QualityType</a> <a class="code" href="classOpenMS_1_1BaseFeature.html#aae57ec1341e9cb073065c3829ea429e2">quality_</a>;</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;</div>
<div class="line"><a name="l00172"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#a3c72e662cac0433d13549b88c7a9b3aa">  172</a></span>&#160;    <a class="code" href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">ChargeType</a> <a class="code" href="classOpenMS_1_1BaseFeature.html#a3c72e662cac0433d13549b88c7a9b3aa">charge_</a>;</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;</div>
<div class="line"><a name="l00175"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#a227b8e51e850641a77857003ee78454c">  175</a></span>&#160;    <a class="code" href="classOpenMS_1_1BaseFeature.html#aba0baf0503db57d523b7d2d49bc9695b">WidthType</a> <a class="code" href="classOpenMS_1_1BaseFeature.html#a227b8e51e850641a77857003ee78454c">width_</a>;</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;</div>
<div class="line"><a name="l00178"></a><span class="lineno"><a class="line" href="classOpenMS_1_1BaseFeature.html#adab38ed9f5e6a92eafa936ce71fd4d81">  178</a></span>&#160;    std::vector&lt;PeptideIdentification&gt; <a class="code" href="classOpenMS_1_1BaseFeature.html#adab38ed9f5e6a92eafa936ce71fd4d81">peptides_</a>;</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;  };</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;} <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;<span class="preprocessor">#endif // OPENMS_KERNEL_BASEFEATURE_H</span></div>
<div class="ttc" id="structOpenMS_1_1BaseFeature_1_1QualityLess_html_aee2ccb315b290a6bc71259ec51563fe9"><div class="ttname"><a href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#aee2ccb315b290a6bc71259ec51563fe9">OpenMS::BaseFeature::QualityLess::operator()</a></div><div class="ttdeci">bool operator()(const BaseFeature &amp;left, const QualityType &amp;right) const </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:116</div></div>
<div class="ttc" id="group__Concept_html_gab685845059e8a2c92743427d9a698c70"><div class="ttname"><a href="group__Concept.html#gab685845059e8a2c92743427d9a698c70">OpenMS::Real</a></div><div class="ttdeci">float Real</div><div class="ttdoc">Real type. </div><div class="ttdef"><b>Definition:</b> Types.h:109</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_ad99a6d91a3af7fb0c9914b2f41556556aa675578619ae37796e70e401cd8ef07c"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556aa675578619ae37796e70e401cd8ef07c">OpenMS::BaseFeature::FEATURE_ID_NONE</a></div><div class="ttdef"><b>Definition:</b> BaseFeature.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html">OpenMS::Peak2D</a></div><div class="ttdoc">A 2-dimensional raw data point or peak. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_a87171116869a9f9511d7ce9ad7baf5d6"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#a87171116869a9f9511d7ce9ad7baf5d6">OpenMS::BaseFeature::ChargeType</a></div><div class="ttdeci">Int ChargeType</div><div class="ttdoc">Type of charge values. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:64</div></div>
<div class="ttc" id="structOpenMS_1_1BaseFeature_1_1QualityLess_html"><div class="ttname"><a href="structOpenMS_1_1BaseFeature_1_1QualityLess.html">OpenMS::BaseFeature::QualityLess</a></div><div class="ttdoc">Compare by quality. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html">OpenMS::BaseFeature</a></div><div class="ttdoc">A basic LC-MS feature. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_ad99a6d91a3af7fb0c9914b2f41556556a0a01b1ae53e3d211c271b5503f167144"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556a0a01b1ae53e3d211c271b5503f167144">OpenMS::BaseFeature::FEATURE_ID_MULTIPLE_SAME</a></div><div class="ttdef"><b>Definition:</b> BaseFeature.h:73</div></div>
<div class="ttc" id="structOpenMS_1_1BaseFeature_1_1QualityLess_html_a849733831d8a9bca6dd05ffa98bb3e5d"><div class="ttname"><a href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#a849733831d8a9bca6dd05ffa98bb3e5d">OpenMS::BaseFeature::QualityLess::operator()</a></div><div class="ttdeci">bool operator()(const QualityType &amp;left, const BaseFeature &amp;right) const </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:121</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_aae57ec1341e9cb073065c3829ea429e2"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#aae57ec1341e9cb073065c3829ea429e2">OpenMS::BaseFeature::quality_</a></div><div class="ttdeci">QualityType quality_</div><div class="ttdoc">Overall quality measure of the feature. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:169</div></div>
<div class="ttc" id="structOpenMS_1_1BaseFeature_1_1QualityLess_html_a61b073be506f3e87a56b8906dbbe30bb"><div class="ttname"><a href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#a61b073be506f3e87a56b8906dbbe30bb">OpenMS::BaseFeature::QualityLess::operator()</a></div><div class="ttdeci">bool operator()(const QualityType &amp;left, const QualityType &amp;right) const </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:126</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_a813d0a480b9d3394e13763d4514cb239"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#a813d0a480b9d3394e13763d4514cb239">OpenMS::BaseFeature::getQuality</a></div><div class="ttdeci">QualityType getQuality() const </div><div class="ttdoc">Non-mutable access to the overall quality. </div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_aba0baf0503db57d523b7d2d49bc9695b"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#aba0baf0503db57d523b7d2d49bc9695b">OpenMS::BaseFeature::WidthType</a></div><div class="ttdeci">Real WidthType</div><div class="ttdoc">Type of feature width/FWHM (RT) </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:66</div></div>
<div class="ttc" id="structOpenMS_1_1BaseFeature_1_1QualityLess_html_aef5ac6c7652f91369894f1179dfc70bc"><div class="ttname"><a href="structOpenMS_1_1BaseFeature_1_1QualityLess.html#aef5ac6c7652f91369894f1179dfc70bc">OpenMS::BaseFeature::QualityLess::operator()</a></div><div class="ttdeci">bool operator()(const BaseFeature &amp;left, const BaseFeature &amp;right) const </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_a8ca1d75ff489493f4458fa7137186089"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#a8ca1d75ff489493f4458fa7137186089">OpenMS::BaseFeature::QualityType</a></div><div class="ttdeci">Real QualityType</div><div class="ttdoc">Type of quality values. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_ad99a6d91a3af7fb0c9914b2f41556556a0dd9d8fd3a75771cb3dde82431020efb"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556a0dd9d8fd3a75771cb3dde82431020efb">OpenMS::BaseFeature::FEATURE_ID_SINGLE</a></div><div class="ttdef"><b>Definition:</b> BaseFeature.h:72</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_a227b8e51e850641a77857003ee78454c"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#a227b8e51e850641a77857003ee78454c">OpenMS::BaseFeature::width_</a></div><div class="ttdeci">WidthType width_</div><div class="ttdoc">Width (FWHM) for the feature. The default value is 0.0, a feature finding algorithm can compute this ...</div><div class="ttdef"><b>Definition:</b> BaseFeature.h:175</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_ad99a6d91a3af7fb0c9914b2f41556556aaf6da6102623aef3380a5d35fe9eb614"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556aaf6da6102623aef3380a5d35fe9eb614">OpenMS::BaseFeature::FEATURE_ID_MULTIPLE_DIVERGENT</a></div><div class="ttdef"><b>Definition:</b> BaseFeature.h:74</div></div>
<div class="ttc" id="PeptideIdentification_8h_html"><div class="ttname"><a href="PeptideIdentification_8h.html">PeptideIdentification.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1RichPeak2D_html"><div class="ttname"><a href="classOpenMS_1_1RichPeak2D.html">OpenMS::RichPeak2D</a></div><div class="ttdoc">A 2-dimensional raw data point or peak with meta information. </div><div class="ttdef"><b>Definition:</b> RichPeak2D.h:53</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_ad99a6d91a3af7fb0c9914b2f41556556"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#ad99a6d91a3af7fb0c9914b2f41556556">OpenMS::BaseFeature::AnnotationState</a></div><div class="ttdeci">AnnotationState</div><div class="ttdoc">state of identification, use getIDState() to query it </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_adab38ed9f5e6a92eafa936ce71fd4d81"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#adab38ed9f5e6a92eafa936ce71fd4d81">OpenMS::BaseFeature::peptides_</a></div><div class="ttdeci">std::vector&lt; PeptideIdentification &gt; peptides_</div><div class="ttdoc">Peptide PeptideIdentifications belonging to the feature. </div><div class="ttdef"><b>Definition:</b> BaseFeature.h:178</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="RichPeak2D_8h_html"><div class="ttname"><a href="RichPeak2D_8h.html">RichPeak2D.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1BaseFeature_html_a3c72e662cac0433d13549b88c7a9b3aa"><div class="ttname"><a href="classOpenMS_1_1BaseFeature.html#a3c72e662cac0433d13549b88c7a9b3aa">OpenMS::BaseFeature::charge_</a></div><div class="ttdeci">ChargeType charge_</div><div class="ttdoc">Charge of the peptide represented by this feature. The default value is 0, which represents an unknow...</div><div class="ttdef"><b>Definition:</b> BaseFeature.h:172</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:11 using doxygen 1.8.5</font></TD>
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