1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
|
<HTML>
<HEAD>
<TITLE>ClusteredMS2ConsensusSpectrum.h Source File</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
<LINK HREF="style_ini.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
<A href="index.html">Home</A> ·
<A href="classes.html">Classes</A> ·
<A href="annotated.html">Annotated Classes</A> ·
<A href="modules.html">Modules</A> ·
<A href="functions_func.html">Members</A> ·
<A href="namespaces.html">Namespaces</A> ·
<A href="pages.html">Related Pages</A>
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<!-- Generated by Doxygen 1.8.5 -->
<div id="nav-path" class="navpath">
<ul>
<li class="navelem"><a class="el" href="dir_e770f0cf77e550adde3f44739ef529fe.html">include</a></li><li class="navelem"><a class="el" href="dir_6a63c4937d4da007e55fff5dcf71e0f8.html">OpenMS</a></li><li class="navelem"><a class="el" href="dir_9f700962877a340cb515a8f4e78fa50c.html">TRANSFORMATIONS</a></li><li class="navelem"><a class="el" href="dir_37e9c1b52d0b253b62f883ccdf65930c.html">FEATUREFINDER</a></li><li class="navelem"><a class="el" href="dir_85426f95c54d3036067585334ac23a8c.html">SUPERHIRN</a></li> </ul>
</div>
</div><!-- top -->
<div class="header">
<div class="headertitle">
<div class="title">ClusteredMS2ConsensusSpectrum.h</div> </div>
</div><!--header-->
<div class="contents">
<a href="ClusteredMS2ConsensusSpectrum_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Florian Zeller $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: Lukas Mueller, Markus Mueller $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">//</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="comment"></span><span class="comment">//</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="comment">// PEAK DETECTION OF FOURIER TRANSFORME MS INSTRUMENT DATA</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="comment">//</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="comment">// written by Markus Mueller, markus.mueller@imsb.biol.ethz.ch</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="comment">// ( and Lukas Mueller, Lukas.Mueller@imsb.biol.ethz.ch)</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="comment">// October 2005</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="comment">//</span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="comment">// Ported to OpenMS by Florian Zeller, florian.zeller@bsse.ethz.ch</span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="comment">// December 2010</span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="comment">//</span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> <span class="comment">// Group of Prof. Ruedi Aebersold, IMSB, ETH Hoenggerberg, Zurich</span></div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="comment">//</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> <span class="comment">//</span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> </div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_CLUSTEREDMS2CONSENSUSSPECTRUM_H</span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_CLUSTEREDMS2CONSENSUSSPECTRUM_H</span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> <span class="preprocessor">#include <<a class="code" href="Types_8h.html">OpenMS/CONCEPT/Types.h</a>></span></div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> <span class="preprocessor">#include <<a class="code" href="MS2ConsensusSpectrum_8h.html">OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2ConsensusSpectrum.h</a>></span></div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"> 57</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span> {</div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span> </div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html"> 60</a></span>  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> :</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MS2ConsensusSpectrum.html">MS2ConsensusSpectrum</a></div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  {</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> </div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="comment">// declaration of the private members:</span></div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span> </div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span> <span class="keyword">private</span>:</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span>  <span class="comment">// declaration of the public members:</span></div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <span class="comment">// stores the individual MS/MS spectra:</span></div>
<div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a9a87b1d304f0adfccf2e0631d7b1d10c"> 73</a></span>  std::vector<int> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a9a87b1d304f0adfccf2e0631d7b1d10c">MS2Scans</a>;</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> </div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keyword">using</span> MS2ConsensusSpectrum::operator=;</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span> </div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="comment">// class destructor</span></div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  ~<a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a>();</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <span class="comment">// class constructor</span></div>
<div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#aacc5f74e68cb6a33f5d2f44f2626e4b6"> 83</a></span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#aacc5f74e68cb6a33f5d2f44f2626e4b6">ClusteredMS2ConsensusSpectrum</a>() {}</div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a>(<a class="code" href="classOpenMS_1_1MS2Fragment.html">MS2Fragment</a> *);</div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a>(<a class="code" href="classOpenMS_1_1MS2ConsensusSpectrum.html">MS2ConsensusSpectrum</a> *);</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a>(<span class="keywordtype">double</span>, <span class="keywordtype">double</span>, <span class="keywordtype">int</span>, <span class="keywordtype">int</span>);</div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="comment">// class copy constructor</span></div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> &);</div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <span class="comment">// class copy constructor</span></div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> *);</div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <span class="comment">// overload operators:</span></div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span>  <span class="comment">//ClusteredMS2ConsensusSpectrum& operator=(const ClusteredMS2ConsensusSpectrum&);</span></div>
<div class="line"><a name="l00096"></a><span class="lineno"> 96</span>  <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> &);</div>
<div class="line"><a name="l00097"></a><span class="lineno"> 97</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> & operator<=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> &);</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> & operator>=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> &);</div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> & operator<(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> &);</div>
<div class="line"><a name="l00100"></a><span class="lineno"> 100</span>  <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> & operator>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">ClusteredMS2ConsensusSpectrum</a> &);</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span> </div>
<div class="line"><a name="l00103"></a><span class="lineno"> 103</span>  <span class="comment">// trace the fragments across MS/MS scans runs:</span></div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  <span class="keywordtype">void</span> constructClusteredConsenusSpectraFragments(<a class="code" href="classOpenMS_1_1MS2ConsensusSpectrum.html">MS2ConsensusSpectrum</a> *);</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00106"></a><span class="lineno"> 106</span>  <span class="comment">// add a MS2 Consensus Spectrum:</span></div>
<div class="line"><a name="l00107"></a><span class="lineno"> 107</span>  <span class="keywordtype">void</span> addMS2ConsensusSpectrum(<a class="code" href="classOpenMS_1_1MS2ConsensusSpectrum.html">MS2ConsensusSpectrum</a> *);</div>
<div class="line"><a name="l00108"></a><span class="lineno"> 108</span> </div>
<div class="line"><a name="l00110"></a><span class="lineno"> 110</span>  <span class="comment">// extracts fragments from a MS/MS spectra and inserts</span></div>
<div class="line"><a name="l00111"></a><span class="lineno"> 111</span>  <span class="comment">// them into the Clustered MS/MS spectrum:</span></div>
<div class="line"><a name="l00112"></a><span class="lineno"> 112</span>  <span class="keywordtype">void</span> extractFragmentsFromSpectra(<a class="code" href="classOpenMS_1_1MS2ConsensusSpectrum.html">MS2ConsensusSpectrum</a> *);</div>
<div class="line"><a name="l00113"></a><span class="lineno"> 113</span>  <span class="comment">// merge a MS2 fragment into the target MS2 fragment:</span></div>
<div class="line"><a name="l00114"></a><span class="lineno"> 114</span>  <span class="keywordtype">void</span> mergeMS2Fragments(<a class="code" href="classOpenMS_1_1MS2Fragment.html">MS2Fragment</a> *, <a class="code" href="classOpenMS_1_1MS2Fragment.html">MS2Fragment</a> *);</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span> </div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span>  <span class="comment">// plot all the consensus MS2 spectrum in one plot:</span></div>
<div class="line"><a name="l00117"></a><span class="lineno"> 117</span>  <span class="keywordtype">void</span> plotCombinedSpectra();</div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"> 119</span>  <span class="comment">// remove outlier fragments based on their:</span></div>
<div class="line"><a name="l00120"></a><span class="lineno"> 120</span>  <span class="comment">// MS2Fragment::OutlierAttribute = ...</span></div>
<div class="line"><a name="l00121"></a><span class="lineno"> 121</span>  <span class="comment">// 1: retention time</span></div>
<div class="line"><a name="l00122"></a><span class="lineno"> 122</span>  <span class="comment">// 2: precursor mass</span></div>
<div class="line"><a name="l00123"></a><span class="lineno"> 123</span>  <span class="comment">// etc.</span></div>
<div class="line"><a name="l00124"></a><span class="lineno"> 124</span>  <span class="keywordtype">void</span> removeOutlierFragments();</div>
<div class="line"><a name="l00125"></a><span class="lineno"> 125</span> </div>
<div class="line"><a name="l00127"></a><span class="lineno"> 127</span>  <span class="comment">// start here all the get / set</span></div>
<div class="line"><a name="l00128"></a><span class="lineno"> 128</span>  <span class="comment">// function to access the</span></div>
<div class="line"><a name="l00129"></a><span class="lineno"> 129</span>  <span class="comment">// variables of the class</span></div>
<div class="line"><a name="l00130"></a><span class="lineno"> 130</span> </div>
<div class="line"><a name="l00131"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a58caffa8d450793b7e6c53daeee37ae8"> 131</a></span>  <span class="keywordtype">int</span> <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a58caffa8d450793b7e6c53daeee37ae8">getNumberOfSpectraScan</a>()</div>
<div class="line"><a name="l00132"></a><span class="lineno"> 132</span>  {</div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  <span class="keywordflow">return</span> (<span class="keywordtype">int</span>) MS2Scans.size();</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span>  }</div>
<div class="line"><a name="l00135"></a><span class="lineno"> 135</span> </div>
<div class="line"><a name="l00136"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a35707b648402952875145c465866083c"> 136</a></span>  std::vector<int>::iterator <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a35707b648402952875145c465866083c">getSpectraScanNumberStart</a>()</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span>  {</div>
<div class="line"><a name="l00138"></a><span class="lineno"> 138</span>  <span class="keywordflow">return</span> MS2Scans.begin();</div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  }</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> </div>
<div class="line"><a name="l00141"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a88fe48998d74a541f539d929aa1431aa"> 141</a></span>  std::vector<int>::iterator <a class="code" href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a88fe48998d74a541f539d929aa1431aa">getSpectraScanNumberEnd</a>()</div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  {</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span>  <span class="keywordflow">return</span> MS2Scans.end();</div>
<div class="line"><a name="l00144"></a><span class="lineno"> 144</span>  }</div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span> </div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span>  };</div>
<div class="line"><a name="l00147"></a><span class="lineno"> 147</span> </div>
<div class="line"><a name="l00148"></a><span class="lineno"> 148</span> } <span class="comment">// ns</span></div>
<div class="line"><a name="l00149"></a><span class="lineno"> 149</span> </div>
<div class="line"><a name="l00150"></a><span class="lineno"> 150</span> <span class="preprocessor">#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_CLUSTEREDMS2CONSENSUSSPECTRUM_H</span></div>
<div class="ttc" id="classOpenMS_1_1ClusteredMS2ConsensusSpectrum_html_a88fe48998d74a541f539d929aa1431aa"><div class="ttname"><a href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a88fe48998d74a541f539d929aa1431aa">OpenMS::ClusteredMS2ConsensusSpectrum::getSpectraScanNumberEnd</a></div><div class="ttdeci">std::vector< int >::iterator getSpectraScanNumberEnd()</div><div class="ttdef"><b>Definition:</b> ClusteredMS2ConsensusSpectrum.h:141</div></div>
<div class="ttc" id="classOpenMS_1_1ClusteredMS2ConsensusSpectrum_html_a35707b648402952875145c465866083c"><div class="ttname"><a href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a35707b648402952875145c465866083c">OpenMS::ClusteredMS2ConsensusSpectrum::getSpectraScanNumberStart</a></div><div class="ttdeci">std::vector< int >::iterator getSpectraScanNumberStart()</div><div class="ttdef"><b>Definition:</b> ClusteredMS2ConsensusSpectrum.h:136</div></div>
<div class="ttc" id="Types_8h_html"><div class="ttname"><a href="Types_8h.html">Types.h</a></div></div>
<div class="ttc" id="MS2ConsensusSpectrum_8h_html"><div class="ttname"><a href="MS2ConsensusSpectrum_8h.html">MS2ConsensusSpectrum.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ClusteredMS2ConsensusSpectrum_html_a58caffa8d450793b7e6c53daeee37ae8"><div class="ttname"><a href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a58caffa8d450793b7e6c53daeee37ae8">OpenMS::ClusteredMS2ConsensusSpectrum::getNumberOfSpectraScan</a></div><div class="ttdeci">int getNumberOfSpectraScan()</div><div class="ttdef"><b>Definition:</b> ClusteredMS2ConsensusSpectrum.h:131</div></div>
<div class="ttc" id="classOpenMS_1_1ClusteredMS2ConsensusSpectrum_html_aacc5f74e68cb6a33f5d2f44f2626e4b6"><div class="ttname"><a href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#aacc5f74e68cb6a33f5d2f44f2626e4b6">OpenMS::ClusteredMS2ConsensusSpectrum::ClusteredMS2ConsensusSpectrum</a></div><div class="ttdeci">ClusteredMS2ConsensusSpectrum()</div><div class="ttdef"><b>Definition:</b> ClusteredMS2ConsensusSpectrum.h:83</div></div>
<div class="ttc" id="classOpenMS_1_1ClusteredMS2ConsensusSpectrum_html_a9a87b1d304f0adfccf2e0631d7b1d10c"><div class="ttname"><a href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html#a9a87b1d304f0adfccf2e0631d7b1d10c">OpenMS::ClusteredMS2ConsensusSpectrum::MS2Scans</a></div><div class="ttdeci">std::vector< int > MS2Scans</div><div class="ttdef"><b>Definition:</b> ClusteredMS2ConsensusSpectrum.h:73</div></div>
<div class="ttc" id="classOpenMS_1_1ClusteredMS2ConsensusSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1ClusteredMS2ConsensusSpectrum.html">OpenMS::ClusteredMS2ConsensusSpectrum</a></div><div class="ttdef"><b>Definition:</b> ClusteredMS2ConsensusSpectrum.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1MS2ConsensusSpectrum_html"><div class="ttname"><a href="classOpenMS_1_1MS2ConsensusSpectrum.html">OpenMS::MS2ConsensusSpectrum</a></div><div class="ttdef"><b>Definition:</b> MS2ConsensusSpectrum.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1MS2Fragment_html"><div class="ttname"><a href="classOpenMS_1_1MS2Fragment.html">OpenMS::MS2Fragment</a></div><div class="ttdef"><b>Definition:</b> MS2Fragment.h:59</div></div>
</div><!-- fragment --></div><!-- contents -->
<HR style="height:1px; border:none; border-top:1px solid #c0c0c0;">
<TABLE width="100%" border="0">
<TR>
<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:12 using doxygen 1.8.5</font></TD>
</TR>
</TABLE>
</BODY>
</HTML>
|
