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<a href="Compomer_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
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<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
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<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: Chris Bielow $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Chris Bielow $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_DATASTRUCTURES_COMPOMER_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_DATASTRUCTURES_COMPOMER_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;</div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Macros_8h.html">OpenMS/CONCEPT/Macros.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="Map_8h.html">OpenMS/DATASTRUCTURES/Map.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;{</div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;</div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;  <span class="keyword">class </span>String;</div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;  <span class="keyword">class </span>StringList;</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;  <span class="keyword">class </span>Adduct;</div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;</div>
<div class="line"><a name="l00058"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html">   58</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a></div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;  {</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#aed1a25f4b15c6110f7ac1dc385827049">   62</a></span>&#160;    <span class="keyword">enum</span> <a class="code" href="classOpenMS_1_1Compomer.html#aed1a25f4b15c6110f7ac1dc385827049">SIDE</a> {LEFT, RIGHT, BOTH};</div>
<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;</div>
<div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#aa78d7d17b5d5ff670a4e82e93066fa82">   64</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Map.html">Map&lt;String, Adduct&gt;</a> <a class="code" href="classOpenMS_1_1Compomer.html#aa78d7d17b5d5ff670a4e82e93066fa82">CompomerSide</a>; </div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#ad04aa9f009caf6b9f464c6713afaf028">   65</a></span>&#160;    <span class="keyword">typedef</span> std::vector&lt;CompomerSide&gt; <a class="code" href="classOpenMS_1_1Compomer.html#ad04aa9f009caf6b9f464c6713afaf028">CompomerComponents</a>; </div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a>();</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;    <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a>(<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> net_charge, <a class="code" href="classdouble.html">DoubleReal</a> mass, <a class="code" href="classdouble.html">DoubleReal</a> log_p);</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; p);</div>
<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;    <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; operator=(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; source);</div>
<div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;    <span class="keywordtype">void</span> add(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Adduct.html">Adduct</a> &amp; a, <a class="code" href="classunsigned_01int.html">UInt</a> side);</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;    <span class="keywordtype">bool</span> isConflicting(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; cmp, <a class="code" href="classunsigned_01int.html">UInt</a> side_this, <a class="code" href="classunsigned_01int.html">UInt</a> side_other) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    <span class="keywordtype">void</span> setID(<span class="keyword">const</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> &amp; <span class="keywordtype">id</span>);</div>
<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;    <span class="keyword">const</span> <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> &amp; getID() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html#ad04aa9f009caf6b9f464c6713afaf028">CompomerComponents</a> &amp; getComponent() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;    <span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> &amp; getNetCharge() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;    <span class="keyword">const</span> <a class="code" href="classdouble.html">DoubleReal</a> &amp; getMass() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;    <span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> &amp; getPositiveCharges() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;</div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;    <span class="keyword">const</span> <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> &amp; getNegativeCharges() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    <span class="keyword">const</span> <a class="code" href="classdouble.html">DoubleReal</a> &amp; getLogP() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;    <span class="keyword">const</span> <a class="code" href="classdouble.html">DoubleReal</a> &amp; getRTShift() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> getAdductsAsString() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> getAdductsAsString(<a class="code" href="classunsigned_01int.html">UInt</a> side) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;    <span class="keywordtype">bool</span> isSingleAdduct(<a class="code" href="classOpenMS_1_1Adduct.html">Adduct</a> &amp; a, <span class="keyword">const</span> <a class="code" href="classunsigned_01int.html">UInt</a> side) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;    <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> removeAdduct(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Adduct.html">Adduct</a> &amp; a) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> removeAdduct(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Adduct.html">Adduct</a> &amp; a, <span class="keyword">const</span> <a class="code" href="classunsigned_01int.html">UInt</a> side) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;    <a class="code" href="classOpenMS_1_1StringList.html">StringList</a> getLabels(<span class="keyword">const</span> <a class="code" href="classunsigned_01int.html">UInt</a> side) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;    <span class="keywordtype">void</span> add(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Map.html">CompomerSide</a> &amp; add_side, <a class="code" href="classunsigned_01int.html">UInt</a> side);</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;    <span class="keyword">friend</span> OPENMS_DLLAPI <span class="keywordtype">bool</span> operator&lt;(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; c1, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; c2);</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    <span class="keyword">friend</span> OPENMS_DLLAPI std::ostream &amp; <a class="code" href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">operator&lt;&lt;</a>(std::ostream &amp; os, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; cmp);</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;    <span class="keyword">friend</span> OPENMS_DLLAPI <span class="keywordtype">bool</span> operator==(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; a, <span class="keyword">const</span>  <a class="code" href="classOpenMS_1_1Compomer.html">Compomer</a> &amp; b);</div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;<span class="keyword">private</span>:</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;</div>
<div class="line"><a name="l00164"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#a3e741a5d9b798bb989188d5fb20f030c">  164</a></span>&#160;    <a class="code" href="classOpenMS_1_1Compomer.html#ad04aa9f009caf6b9f464c6713afaf028">CompomerComponents</a> <a class="code" href="classOpenMS_1_1Compomer.html#a3e741a5d9b798bb989188d5fb20f030c">cmp_</a>; <span class="comment">//&lt; adducts of left and right side</span></div>
<div class="line"><a name="l00165"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#aafb410a448913ab950ee7f373475968f">  165</a></span>&#160;    <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="classOpenMS_1_1Compomer.html#aafb410a448913ab950ee7f373475968f">net_charge_</a>;         <span class="comment">//&lt; net charge (right - left)</span></div>
<div class="line"><a name="l00166"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#ac0c786325cbcf73a4146acd843b3e404">  166</a></span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1Compomer.html#ac0c786325cbcf73a4146acd843b3e404">mass_</a>;        <span class="comment">//&lt; net mass (right - left)</span></div>
<div class="line"><a name="l00167"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#a9c196faf8786109533ddc88ab71ece1a">  167</a></span>&#160;    <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="classOpenMS_1_1Compomer.html#a9c196faf8786109533ddc88ab71ece1a">pos_charges_</a>;        <span class="comment">//&lt; net charges on the right</span></div>
<div class="line"><a name="l00168"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#a3efb91145d637849c1ac65735056276c">  168</a></span>&#160;    <a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> <a class="code" href="classOpenMS_1_1Compomer.html#a3efb91145d637849c1ac65735056276c">neg_charges_</a>;        <span class="comment">//&lt; net charges on the left</span></div>
<div class="line"><a name="l00169"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#a4342985a05bfd3ce6774d5648c70dc5e">  169</a></span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1Compomer.html#a4342985a05bfd3ce6774d5648c70dc5e">log_p_</a>;   <span class="comment">//&lt; log probability of compomer</span></div>
<div class="line"><a name="l00170"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#a1df0bce61094fa69cb0d0864792856c5">  170</a></span>&#160;    <a class="code" href="classdouble.html">DoubleReal</a> <a class="code" href="classOpenMS_1_1Compomer.html#a1df0bce61094fa69cb0d0864792856c5">rt_shift_</a>; <span class="comment">//&lt; expected net RT shift of compomer (-shift_leftside + shift_rightside)</span></div>
<div class="line"><a name="l00171"></a><span class="lineno"><a class="line" href="classOpenMS_1_1Compomer.html#ae9abbad657fb4c7c3265d65c74b0e65c">  171</a></span>&#160;    <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1Compomer.html#ae9abbad657fb4c7c3265d65c74b0e65c">id_</a>;</div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;  }; <span class="comment">// \Compomer</span></div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;} <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;<span class="preprocessor">#endif //OPENMS_DATASTRUCTURES_COMPOMER_H</span></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_a3e741a5d9b798bb989188d5fb20f030c"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#a3e741a5d9b798bb989188d5fb20f030c">OpenMS::Compomer::cmp_</a></div><div class="ttdeci">CompomerComponents cmp_</div><div class="ttdef"><b>Definition:</b> Compomer.h:164</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_a3efb91145d637849c1ac65735056276c"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#a3efb91145d637849c1ac65735056276c">OpenMS::Compomer::neg_charges_</a></div><div class="ttdeci">Int neg_charges_</div><div class="ttdef"><b>Definition:</b> Compomer.h:168</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_ad04aa9f009caf6b9f464c6713afaf028"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#ad04aa9f009caf6b9f464c6713afaf028">OpenMS::Compomer::CompomerComponents</a></div><div class="ttdeci">std::vector&lt; CompomerSide &gt; CompomerComponents</div><div class="ttdoc">adducts and their abundance etc </div><div class="ttdef"><b>Definition:</b> Compomer.h:65</div></div>
<div class="ttc" id="Map_8h_html"><div class="ttname"><a href="Map_8h.html">Map.h</a></div></div>
<div class="ttc" id="namespaceOpenMS_html_a74df8b74439d1f76961c8d987fb074fd"><div class="ttname"><a href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">OpenMS::operator&lt;&lt;</a></div><div class="ttdeci">std::ostream &amp; operator&lt;&lt;(std::ostream &amp;os, const ItraqQuantifier::ItraqQuantifierStats &amp;stats)</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html"><div class="ttname"><a href="classOpenMS_1_1Compomer.html">OpenMS::Compomer</a></div><div class="ttdoc">Holds information on an edge connecting two features from a (putative) charge ladder. </div><div class="ttdef"><b>Definition:</b> Compomer.h:58</div></div>
<div class="ttc" id="classdouble_html"><div class="ttname"><a href="classdouble.html">double</a></div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_aafb410a448913ab950ee7f373475968f"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#aafb410a448913ab950ee7f373475968f">OpenMS::Compomer::net_charge_</a></div><div class="ttdeci">Int net_charge_</div><div class="ttdef"><b>Definition:</b> Compomer.h:165</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_a4342985a05bfd3ce6774d5648c70dc5e"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#a4342985a05bfd3ce6774d5648c70dc5e">OpenMS::Compomer::log_p_</a></div><div class="ttdeci">DoubleReal log_p_</div><div class="ttdef"><b>Definition:</b> Compomer.h:169</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_aa78d7d17b5d5ff670a4e82e93066fa82"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#aa78d7d17b5d5ff670a4e82e93066fa82">OpenMS::Compomer::CompomerSide</a></div><div class="ttdeci">Map&lt; String, Adduct &gt; CompomerSide</div><div class="ttdef"><b>Definition:</b> Compomer.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1Adduct_html"><div class="ttname"><a href="classOpenMS_1_1Adduct.html">OpenMS::Adduct</a></div><div class="ttdef"><b>Definition:</b> Adduct.h:46</div></div>
<div class="ttc" id="Macros_8h_html"><div class="ttname"><a href="Macros_8h.html">Macros.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_ae9abbad657fb4c7c3265d65c74b0e65c"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#ae9abbad657fb4c7c3265d65c74b0e65c">OpenMS::Compomer::id_</a></div><div class="ttdeci">Size id_</div><div class="ttdef"><b>Definition:</b> Compomer.h:171</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_ac0c786325cbcf73a4146acd843b3e404"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#ac0c786325cbcf73a4146acd843b3e404">OpenMS::Compomer::mass_</a></div><div class="ttdeci">DoubleReal mass_</div><div class="ttdef"><b>Definition:</b> Compomer.h:166</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_aed1a25f4b15c6110f7ac1dc385827049"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#aed1a25f4b15c6110f7ac1dc385827049">OpenMS::Compomer::SIDE</a></div><div class="ttdeci">SIDE</div><div class="ttdoc">side of compomer (LEFT ^ substract; RIGHT ^ add) </div><div class="ttdef"><b>Definition:</b> Compomer.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1StringList_html"><div class="ttname"><a href="classOpenMS_1_1StringList.html">OpenMS::StringList</a></div><div class="ttdoc">String list. </div><div class="ttdef"><b>Definition:</b> StringList.h:56</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_a9c196faf8786109533ddc88ab71ece1a"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#a9c196faf8786109533ddc88ab71ece1a">OpenMS::Compomer::pos_charges_</a></div><div class="ttdeci">Int pos_charges_</div><div class="ttdef"><b>Definition:</b> Compomer.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1Compomer_html_a1df0bce61094fa69cb0d0864792856c5"><div class="ttname"><a href="classOpenMS_1_1Compomer.html#a1df0bce61094fa69cb0d0864792856c5">OpenMS::Compomer::rt_shift_</a></div><div class="ttdeci">DoubleReal rt_shift_</div><div class="ttdef"><b>Definition:</b> Compomer.h:170</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1Map_html"><div class="ttname"><a href="classOpenMS_1_1Map.html">OpenMS::Map</a></div><div class="ttdoc">Map class based on the STL map (containing serveral convenience functions) </div><div class="ttdef"><b>Definition:</b> Map.h:50</div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:12 using doxygen 1.8.5</font></TD>
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