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<a href="ConsensusMap_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> <span class="comment">// notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="comment">// * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="comment">// notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="comment">// documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="comment">// * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="comment">// may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="comment">// without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"</span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> <span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="comment">// $Maintainer: Erhan Kenar $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="comment">// $Authors: $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> </div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor">#ifndef OPENMS_KERNEL_CONSENSUSMAP_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span><span class="preprocessor">#define OPENMS_KERNEL_CONSENSUSMAP_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor">#include <<a class="code" href="Map_8h.html">OpenMS/DATASTRUCTURES/Map.h</a>></span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor">#include <<a class="code" href="MSExperiment_8h.html">OpenMS/KERNEL/MSExperiment.h</a>></span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor">#include <<a class="code" href="ConsensusFeature_8h.html">OpenMS/KERNEL/ConsensusFeature.h</a>></span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor">#include <<a class="code" href="RangeManager_8h.html">OpenMS/KERNEL/RangeManager.h</a>></span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor">#include <<a class="code" href="ComparatorUtils_8h.html">OpenMS/KERNEL/ComparatorUtils.h</a>></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span> <span class="preprocessor">#include <<a class="code" href="ProteinIdentification_8h.html">OpenMS/METADATA/ProteinIdentification.h</a>></span></div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#include <<a class="code" href="FeatureMap_8h.html">OpenMS/KERNEL/FeatureMap.h</a>></span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor">#include <<a class="code" href="UniqueIdIndexer_8h.html">OpenMS/CONCEPT/UniqueIdIndexer.h</a>></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span> {</div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html"> 60</a></span>  <span class="keyword">class </span><a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> : <span class="comment">// no OPENMS_DLLAPI here, since the class is derived from an STL class - we do not want parts of the STL lib in OpenMS.lib, since it will cause linker errors</span></div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="keyword">private</span> std::vector<ConsensusFeature>,</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a>,</div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager</a><2>,</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1DocumentIdentifier.html">DocumentIdentifier</a>,</div>
<div class="line"><a name="l00065"></a><span class="lineno"> 65</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1UniqueIdInterface.html">UniqueIdInterface</a>,</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1UniqueIdIndexer.html">UniqueIdIndexer</a><ConsensusMap></div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  {</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> <span class="keyword">public</span>:</div>
<div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#af05c3613b1411d927984b2e59cb58353"> 70</a></span>  <span class="keyword">typedef</span> std::vector<ConsensusFeature> <a class="code" href="classOpenMS_1_1ConsensusMap.html#af05c3613b1411d927984b2e59cb58353">privvec</a>;</div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span>  <span class="comment">// types</span></div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span>  <span class="keyword">using</span> privvec::value_type; </div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span>  <span class="keyword">using</span> privvec::iterator; </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span>  <span class="keyword">using</span> privvec::const_iterator; </div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span>  <span class="keyword">using</span> privvec::size_type; </div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span>  <span class="keyword">using</span> privvec::pointer; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="keyword">using</span> privvec::reference; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <span class="keyword">using</span> privvec::const_reference; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keyword">using</span> privvec::difference_type; <span class="comment">// ConstRefVector</span></div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span>  </div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span>  <span class="comment">// functions</span></div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span>  <span class="keyword">using</span> privvec::begin; </div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span>  <span class="keyword">using</span> privvec::end; </div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> </div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span>  <span class="keyword">using</span> privvec::size; </div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span>  <span class="keyword">using</span> privvec::resize;</div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span>  <span class="keyword">using</span> privvec::empty; </div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span>  <span class="keyword">using</span> privvec::reserve; </div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span>  <span class="keyword">using</span> privvec::operator[]; </div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span>  <span class="keyword">using</span> privvec::at; <span class="comment">// UniqueIdIndexer</span></div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span>  <span class="keyword">using</span> privvec::back; <span class="comment">// source/ANALYSIS/DECHARGING/FeatureDeconvolution.C:977:</span></div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> </div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span>  <span class="keyword">using</span> privvec::push_back; </div>
<div class="line"><a name="l00095"></a><span class="lineno"> 95</span> </div>
<div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html"> 97</a></span>  <span class="keyword">struct </span>OPENMS_DLLAPI <a class="code" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html">FileDescription</a> :</div>
<div class="line"><a name="l00098"></a><span class="lineno"> 98</span>  <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a></div>
<div class="line"><a name="l00099"></a><span class="lineno"> 99</span>  {</div>
<div class="line"><a name="l00101"></a><span class="lineno"> 101</span>  <a class="code" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html">FileDescription</a>();</div>
<div class="line"><a name="l00102"></a><span class="lineno"> 102</span> </div>
<div class="line"><a name="l00104"></a><span class="lineno"> 104</span>  FileDescription(<span class="keyword">const</span> FileDescription &);</div>
<div class="line"><a name="l00105"></a><span class="lineno"> 105</span> </div>
<div class="line"><a name="l00107"></a><span class="lineno"><a class="line" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#ae59f2daabb9fbadf96ab4fceb44d6f77"> 107</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#ae59f2daabb9fbadf96ab4fceb44d6f77">filename</a>;</div>
<div class="line"><a name="l00109"></a><span class="lineno"><a class="line" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#aec69fbfab86b7473c3e6ccea79368f0f"> 109</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#aec69fbfab86b7473c3e6ccea79368f0f">label</a>;</div>
<div class="line"><a name="l00112"></a><span class="lineno"><a class="line" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#a693887ab47dee6ab960fb1ef887c56cf"> 112</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#a693887ab47dee6ab960fb1ef887c56cf">size</a>;</div>
<div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#a563c11f5d5ba0d20ba161a3e077fd2e3"> 114</a></span>  <a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> <a class="code" href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#a563c11f5d5ba0d20ba161a3e077fd2e3">unique_id</a>;</div>
<div class="line"><a name="l00115"></a><span class="lineno"> 115</span>  };</div>
<div class="line"><a name="l00116"></a><span class="lineno"> 116</span> </div>
<div class="line"><a name="l00118"></a><span class="lineno"> 118</span> </div>
<div class="line"><a name="l00119"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a32a2cc1b22a3a3f270385f02847fc41f"> 119</a></span>  <span class="keyword">typedef</span> std::vector<ConsensusFeature> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a32a2cc1b22a3a3f270385f02847fc41f">Base</a>;</div>
<div class="line"><a name="l00120"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a035217389fa12c02d059ddfb29c459e1"> 120</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1RangeManager.html">RangeManager<2></a> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a035217389fa12c02d059ddfb29c459e1">RangeManagerType</a>;</div>
<div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#ae8509d3be6d8935837b78e9c7c40eb38"> 121</a></span>  <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1Map.html">Map<UInt64, FileDescription></a> <a class="code" href="classOpenMS_1_1ConsensusMap.html#ae8509d3be6d8935837b78e9c7c40eb38">FileDescriptions</a>;</div>
<div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a3932d0584af43e58f8859bba93b28c4f"> 123</a></span>  <span class="keyword">typedef</span> std::vector<ConsensusFeature>::iterator <a class="code" href="classOpenMS_1_1ConsensusMap.html#a3932d0584af43e58f8859bba93b28c4f">Iterator</a>;</div>
<div class="line"><a name="l00125"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#aa247b0d70b8d241fbe404d0e692c99b8"> 125</a></span>  <span class="keyword">typedef</span> std::vector<ConsensusFeature>::const_iterator <a class="code" href="classOpenMS_1_1ConsensusMap.html#aa247b0d70b8d241fbe404d0e692c99b8">ConstIterator</a>;</div>
<div class="line"><a name="l00127"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#abd9dec28283eb419db8e4d531893a901"> 127</a></span>  <span class="keyword">typedef</span> std::vector<ConsensusFeature>::reverse_iterator <a class="code" href="classOpenMS_1_1ConsensusMap.html#abd9dec28283eb419db8e4d531893a901">ReverseIterator</a>;</div>
<div class="line"><a name="l00129"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a6e2057b7fe81b9ede0225a46984df571"> 129</a></span>  <span class="keyword">typedef</span> std::vector<ConsensusFeature>::const_reverse_iterator <a class="code" href="classOpenMS_1_1ConsensusMap.html#a6e2057b7fe81b9ede0225a46984df571">ConstReverseIterator</a>;</div>
<div class="line"><a name="l00131"></a><span class="lineno"> 131</span> </div>
<div class="line"><a name="l00133"></a><span class="lineno"> 133</span>  OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ConsensusMap.html#a7e4c78c79368fccedda7e461aa830147">ConsensusMap</a>();</div>
<div class="line"><a name="l00134"></a><span class="lineno"> 134</span> </div>
<div class="line"><a name="l00136"></a><span class="lineno"> 136</span>  OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ConsensusMap.html#a7e4c78c79368fccedda7e461aa830147">ConsensusMap</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & source);</div>
<div class="line"><a name="l00137"></a><span class="lineno"> 137</span> </div>
<div class="line"><a name="l00139"></a><span class="lineno"> 139</span>  OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ConsensusMap.html#a599f8cdb4ba7eed59e5b5ea043f43d88">~ConsensusMap</a>();</div>
<div class="line"><a name="l00140"></a><span class="lineno"> 140</span> </div>
<div class="line"><a name="l00142"></a><span class="lineno"> 142</span>  OPENMS_DLLAPI <span class="keyword">explicit</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a7e4c78c79368fccedda7e461aa830147">ConsensusMap</a>(Base::size_type n);</div>
<div class="line"><a name="l00143"></a><span class="lineno"> 143</span> </div>
<div class="line"><a name="l00145"></a><span class="lineno"> 145</span>  OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#a3043bd8fe62c3615c7f5dec91a40aad8">operator=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & source);</div>
<div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#a8e89143e2b323a0c0822b4898818adfd">operator+=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & rhs);</div>
<div class="line"><a name="l00157"></a><span class="lineno"> 157</span> </div>
<div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a7b5660c6199fa9d5fef65974c7e3e733">clear</a>(<span class="keywordtype">bool</span> clear_meta_data = <span class="keyword">true</span>);</div>
<div class="line"><a name="l00164"></a><span class="lineno"> 164</span> </div>
<div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  OPENMS_DLLAPI <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Map.html">FileDescriptions</a> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#af06e9b6397019879824fd6a6f238bfb1">getFileDescriptions</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00167"></a><span class="lineno"> 167</span> </div>
<div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1Map.html">FileDescriptions</a> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#af06e9b6397019879824fd6a6f238bfb1">getFileDescriptions</a>();</div>
<div class="line"><a name="l00170"></a><span class="lineno"> 170</span> </div>
<div class="line"><a name="l00172"></a><span class="lineno"> 172</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#aa3516e447cd3c4ff4d1f2c90f828e9b2">setFileDescriptions</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Map.html">FileDescriptions</a> & file_description);</div>
<div class="line"><a name="l00173"></a><span class="lineno"> 173</span> </div>
<div class="line"><a name="l00175"></a><span class="lineno"> 175</span>  OPENMS_DLLAPI <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#aa42f45c3d16f8d854a52a8de49faa734">getExperimentType</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00176"></a><span class="lineno"> 176</span> </div>
<div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#af3fc434b747ad4f686744aca8fe9ef84">setExperimentType</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> & experiment_type);</div>
<div class="line"><a name="l00179"></a><span class="lineno"> 179</span> </div>
<div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a93f1c9f620403aec160d98e83e125502">sortByIntensity</a>(<span class="keywordtype">bool</span> reverse = <span class="keyword">false</span>);</div>
<div class="line"><a name="l00189"></a><span class="lineno"> 189</span> </div>
<div class="line"><a name="l00191"></a><span class="lineno"> 191</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a13c4a8ce7f8275728e865728698173e6">sortByRT</a>();</div>
<div class="line"><a name="l00192"></a><span class="lineno"> 192</span> </div>
<div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a604ce6f3380b18acbebda3c1ed14e70c">sortByMZ</a>();</div>
<div class="line"><a name="l00195"></a><span class="lineno"> 195</span> </div>
<div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a86f7b200260209865e730a2e4fcaa628">sortByPosition</a>();</div>
<div class="line"><a name="l00198"></a><span class="lineno"> 198</span> </div>
<div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#abe20215d16b61fa78f24dab794497294">sortByQuality</a>(<span class="keywordtype">bool</span> reverse = <span class="keyword">false</span>);</div>
<div class="line"><a name="l00201"></a><span class="lineno"> 201</span> </div>
<div class="line"><a name="l00203"></a><span class="lineno"> 203</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a771c345052f7ce541a6b1fec88fa37c4">sortBySize</a>();</div>
<div class="line"><a name="l00204"></a><span class="lineno"> 204</span> </div>
<div class="line"><a name="l00206"></a><span class="lineno"> 206</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a4b00fc68dab08aa80d06f295999d8ade">sortByMaps</a>();</div>
<div class="line"><a name="l00207"></a><span class="lineno"> 207</span> </div>
<div class="line"><a name="l00209"></a><span class="lineno"> 209</span> </div>
<div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> FeatureT></div>
<div class="line"><a name="l00230"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#addd3e7ab2d02c8ff9377da76cf2fcaff"> 230</a></span>  <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#addd3e7ab2d02c8ff9377da76cf2fcaff">convert</a>(<a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> <span class="keyword">const</span> input_map_index,</div>
<div class="line"><a name="l00231"></a><span class="lineno"> 231</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap<FeatureT></a> <span class="keyword">const</span> & input_map,</div>
<div class="line"><a name="l00232"></a><span class="lineno"> 232</span>  <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & output_map,</div>
<div class="line"><a name="l00233"></a><span class="lineno"> 233</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> n = -1)</div>
<div class="line"><a name="l00234"></a><span class="lineno"> 234</span>  {</div>
<div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  <span class="keywordflow">if</span> (n > input_map.size())</div>
<div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  {</div>
<div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  n = input_map.size();</div>
<div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  }</div>
<div class="line"><a name="l00239"></a><span class="lineno"> 239</span> </div>
<div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#a7b5660c6199fa9d5fef65974c7e3e733">clear</a>(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  output_map.reserve(n);</div>
<div class="line"><a name="l00242"></a><span class="lineno"> 242</span> </div>
<div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  <span class="comment">// An arguable design decision, see above.</span></div>
<div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  output_map.<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a9c908a735f82adb8f66a326547a9acf8">setUniqueId</a>(input_map.<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a0a9d0893724cca92411b6051f4ce3e16">getUniqueId</a>());</div>
<div class="line"><a name="l00245"></a><span class="lineno"> 245</span> </div>
<div class="line"><a name="l00246"></a><span class="lineno"> 246</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> element_index = 0; element_index < n; ++element_index)</div>
<div class="line"><a name="l00247"></a><span class="lineno"> 247</span>  {</div>
<div class="line"><a name="l00248"></a><span class="lineno"> 248</span>  output_map.push_back(<a class="code" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a>(input_map_index, input_map[element_index]));</div>
<div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  }</div>
<div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#af06e9b6397019879824fd6a6f238bfb1">getFileDescriptions</a>()[input_map_index].size = (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>) input_map.size();</div>
<div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#a6d85ac28bb82da988383fd19b8504988">setProteinIdentifications</a>(input_map.<a class="code" href="classOpenMS_1_1FeatureMap.html#acef58bf2531b77d0191c4780739281c6">getProteinIdentifications</a>());</div>
<div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#a37631ce8db66a5227a34ae2e40b22b8b">setUnassignedPeptideIdentifications</a>(input_map.<a class="code" href="classOpenMS_1_1FeatureMap.html#a001ea2eb2a9c05266a69f50594f25604">getUnassignedPeptideIdentifications</a>());</div>
<div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#adda2fd1aa19da6622530d9073fbcf66d">updateRanges</a>();</div>
<div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  }</div>
<div class="line"><a name="l00255"></a><span class="lineno"> 255</span> </div>
<div class="line"><a name="l00269"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#ae48739acf91763132e117f8b608da145"> 269</a></span>  OPENMS_DLLAPI <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#ae48739acf91763132e117f8b608da145">convert</a>(<a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> <span class="keyword">const</span> input_map_index,</div>
<div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  <a class="code" href="classOpenMS_1_1MSExperiment.html">MSExperiment<></a> & input_map,</div>
<div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & output_map,</div>
<div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> n = -1)</div>
<div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  {</div>
<div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#a7b5660c6199fa9d5fef65974c7e3e733">clear</a>(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00275"></a><span class="lineno"> 275</span> </div>
<div class="line"><a name="l00276"></a><span class="lineno"> 276</span>  <span class="comment">// see @todo above</span></div>
<div class="line"><a name="l00277"></a><span class="lineno"> 277</span>  output_map.<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a9c908a735f82adb8f66a326547a9acf8">setUniqueId</a>();</div>
<div class="line"><a name="l00278"></a><span class="lineno"> 278</span> </div>
<div class="line"><a name="l00279"></a><span class="lineno"> 279</span>  input_map.<a class="code" href="classOpenMS_1_1MSExperiment.html#ae6cec659c6191c8cb73a1f6af8eba1cd">updateRanges</a>(1);</div>
<div class="line"><a name="l00280"></a><span class="lineno"> 280</span>  <span class="keywordflow">if</span> (n > input_map.<a class="code" href="classOpenMS_1_1MSExperiment.html#aac09407a6369916d487f3a83527b8398">getSize</a>())</div>
<div class="line"><a name="l00281"></a><span class="lineno"> 281</span>  {</div>
<div class="line"><a name="l00282"></a><span class="lineno"> 282</span>  n = input_map.<a class="code" href="classOpenMS_1_1MSExperiment.html#aac09407a6369916d487f3a83527b8398">getSize</a>();</div>
<div class="line"><a name="l00283"></a><span class="lineno"> 283</span>  }</div>
<div class="line"><a name="l00284"></a><span class="lineno"> 284</span>  output_map.reserve(n);</div>
<div class="line"><a name="l00285"></a><span class="lineno"> 285</span>  std::vector<Peak2D> tmp;</div>
<div class="line"><a name="l00286"></a><span class="lineno"> 286</span>  tmp.reserve(input_map.<a class="code" href="classOpenMS_1_1MSExperiment.html#aac09407a6369916d487f3a83527b8398">getSize</a>());</div>
<div class="line"><a name="l00287"></a><span class="lineno"> 287</span> </div>
<div class="line"><a name="l00288"></a><span class="lineno"> 288</span>  <span class="comment">// TODO Avoid tripling the memory consumption by this call</span></div>
<div class="line"><a name="l00289"></a><span class="lineno"> 289</span>  input_map.<a class="code" href="classOpenMS_1_1MSExperiment.html#a39cd3877560af16732f709348724f53a">get2DData</a>(tmp);</div>
<div class="line"><a name="l00290"></a><span class="lineno"> 290</span> </div>
<div class="line"><a name="l00291"></a><span class="lineno"> 291</span>  std::partial_sort(tmp.begin(),</div>
<div class="line"><a name="l00292"></a><span class="lineno"> 292</span>  tmp.begin() + n,</div>
<div class="line"><a name="l00293"></a><span class="lineno"> 293</span>  tmp.end(),</div>
<div class="line"><a name="l00294"></a><span class="lineno"> 294</span>  <a class="code" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">reverseComparator</a>(<a class="code" href="structOpenMS_1_1Peak2D_1_1IntensityLess.html">Peak2D::IntensityLess</a>()));</div>
<div class="line"><a name="l00295"></a><span class="lineno"> 295</span> </div>
<div class="line"><a name="l00296"></a><span class="lineno"> 296</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> element_index = 0; element_index < n; ++element_index)</div>
<div class="line"><a name="l00297"></a><span class="lineno"> 297</span>  {</div>
<div class="line"><a name="l00298"></a><span class="lineno"> 298</span>  output_map.push_back(<a class="code" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a>(input_map_index,</div>
<div class="line"><a name="l00299"></a><span class="lineno"> 299</span>  tmp[element_index],</div>
<div class="line"><a name="l00300"></a><span class="lineno"> 300</span>  element_index));</div>
<div class="line"><a name="l00301"></a><span class="lineno"> 301</span>  }</div>
<div class="line"><a name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a name="l00303"></a><span class="lineno"> 303</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#af06e9b6397019879824fd6a6f238bfb1">getFileDescriptions</a>()[input_map_index].size = n;</div>
<div class="line"><a name="l00304"></a><span class="lineno"> 304</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#adda2fd1aa19da6622530d9073fbcf66d">updateRanges</a>();</div>
<div class="line"><a name="l00305"></a><span class="lineno"> 305</span>  }</div>
<div class="line"><a name="l00306"></a><span class="lineno"> 306</span> </div>
<div class="line"><a name="l00319"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#af6f8ba65d3c875e1e6c58618301de25a"> 319</a></span>  OPENMS_DLLAPI <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#af6f8ba65d3c875e1e6c58618301de25a">convert</a>(<a class="code" href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">UInt64</a> <span class="keyword">const</span> input_map_index,</div>
<div class="line"><a name="l00320"></a><span class="lineno"> 320</span>  std::vector<Peak2D> & input_map,</div>
<div class="line"><a name="l00321"></a><span class="lineno"> 321</span>  <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & output_map,</div>
<div class="line"><a name="l00322"></a><span class="lineno"> 322</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> n = -1)</div>
<div class="line"><a name="l00323"></a><span class="lineno"> 323</span>  {</div>
<div class="line"><a name="l00324"></a><span class="lineno"> 324</span>  <span class="comment">// Clear the map and assign new ID.</span></div>
<div class="line"><a name="l00325"></a><span class="lineno"> 325</span>  output_map.<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a9c908a735f82adb8f66a326547a9acf8">setUniqueId</a>();</div>
<div class="line"><a name="l00326"></a><span class="lineno"> 326</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#a7b5660c6199fa9d5fef65974c7e3e733">clear</a>(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00327"></a><span class="lineno"> 327</span> </div>
<div class="line"><a name="l00328"></a><span class="lineno"> 328</span>  <span class="comment">// Determine the maximum size of the map and resize the output map accordingly.</span></div>
<div class="line"><a name="l00329"></a><span class="lineno"> 329</span>  <span class="keywordflow">if</span> (n > input_map.size())</div>
<div class="line"><a name="l00330"></a><span class="lineno"> 330</span>  {</div>
<div class="line"><a name="l00331"></a><span class="lineno"> 331</span>  n = input_map.size();</div>
<div class="line"><a name="l00332"></a><span class="lineno"> 332</span>  }</div>
<div class="line"><a name="l00333"></a><span class="lineno"> 333</span>  output_map.reserve(n);</div>
<div class="line"><a name="l00334"></a><span class="lineno"> 334</span> </div>
<div class="line"><a name="l00335"></a><span class="lineno"> 335</span>  std::partial_sort(input_map.begin(),</div>
<div class="line"><a name="l00336"></a><span class="lineno"> 336</span>  input_map.begin() + n,</div>
<div class="line"><a name="l00337"></a><span class="lineno"> 337</span>  input_map.end(),</div>
<div class="line"><a name="l00338"></a><span class="lineno"> 338</span>  <a class="code" href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">reverseComparator</a>(<a class="code" href="structOpenMS_1_1Peak2D_1_1IntensityLess.html">Peak2D::IntensityLess</a>()));</div>
<div class="line"><a name="l00339"></a><span class="lineno"> 339</span> </div>
<div class="line"><a name="l00340"></a><span class="lineno"> 340</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> element_index = 0; element_index < n; ++element_index)</div>
<div class="line"><a name="l00341"></a><span class="lineno"> 341</span>  {</div>
<div class="line"><a name="l00342"></a><span class="lineno"> 342</span>  output_map.push_back(<a class="code" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a>(input_map_index, input_map[element_index], element_index));</div>
<div class="line"><a name="l00343"></a><span class="lineno"> 343</span>  }</div>
<div class="line"><a name="l00344"></a><span class="lineno"> 344</span> </div>
<div class="line"><a name="l00345"></a><span class="lineno"> 345</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#af06e9b6397019879824fd6a6f238bfb1">getFileDescriptions</a>()[input_map_index].size = n;</div>
<div class="line"><a name="l00346"></a><span class="lineno"> 346</span>  output_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#adda2fd1aa19da6622530d9073fbcf66d">updateRanges</a>();</div>
<div class="line"><a name="l00347"></a><span class="lineno"> 347</span>  }</div>
<div class="line"><a name="l00348"></a><span class="lineno"> 348</span> </div>
<div class="line"><a name="l00359"></a><span class="lineno"> 359</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> FeatureT></div>
<div class="line"><a name="l00360"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a409f35fc16fe5b85dd576c79ae4e15c0"> 360</a></span>  <span class="keyword">static</span> <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a409f35fc16fe5b85dd576c79ae4e15c0">convert</a>(<a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> <span class="keyword">const</span> & input_map,</div>
<div class="line"><a name="l00361"></a><span class="lineno"> 361</span>  <span class="keyword">const</span> <span class="keywordtype">bool</span> keep_uids,</div>
<div class="line"><a name="l00362"></a><span class="lineno"> 362</span>  <a class="code" href="classOpenMS_1_1FeatureMap.html">FeatureMap<FeatureT></a> & output_map)</div>
<div class="line"><a name="l00363"></a><span class="lineno"> 363</span>  {</div>
<div class="line"><a name="l00364"></a><span class="lineno"> 364</span>  output_map.<a class="code" href="classOpenMS_1_1FeatureMap.html#a7b5660c6199fa9d5fef65974c7e3e733">clear</a>(<span class="keyword">true</span>);</div>
<div class="line"><a name="l00365"></a><span class="lineno"> 365</span>  output_map.resize(input_map.size());</div>
<div class="line"><a name="l00366"></a><span class="lineno"> 366</span>  output_map.DocumentIdentifier::operator=(input_map);</div>
<div class="line"><a name="l00367"></a><span class="lineno"> 367</span> </div>
<div class="line"><a name="l00368"></a><span class="lineno"> 368</span>  <span class="keywordflow">if</span> (keep_uids) output_map.UniqueIdInterface::operator=(input_map);</div>
<div class="line"><a name="l00369"></a><span class="lineno"> 369</span>  <span class="keywordflow">else</span> output_map.<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a9c908a735f82adb8f66a326547a9acf8">setUniqueId</a>();</div>
<div class="line"><a name="l00370"></a><span class="lineno"> 370</span> </div>
<div class="line"><a name="l00371"></a><span class="lineno"> 371</span>  output_map.<a class="code" href="classOpenMS_1_1FeatureMap.html#a6d85ac28bb82da988383fd19b8504988">setProteinIdentifications</a>(input_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#acef58bf2531b77d0191c4780739281c6">getProteinIdentifications</a>());</div>
<div class="line"><a name="l00372"></a><span class="lineno"> 372</span>  output_map.<a class="code" href="classOpenMS_1_1FeatureMap.html#a37631ce8db66a5227a34ae2e40b22b8b">setUnassignedPeptideIdentifications</a>(input_map.<a class="code" href="classOpenMS_1_1ConsensusMap.html#a001ea2eb2a9c05266a69f50594f25604">getUnassignedPeptideIdentifications</a>());</div>
<div class="line"><a name="l00373"></a><span class="lineno"> 373</span> </div>
<div class="line"><a name="l00374"></a><span class="lineno"> 374</span>  <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> i = 0; i < input_map.size(); ++i)</div>
<div class="line"><a name="l00375"></a><span class="lineno"> 375</span>  {</div>
<div class="line"><a name="l00376"></a><span class="lineno"> 376</span>  <a class="code" href="classOpenMS_1_1Feature.html">Feature</a> & f = output_map[i];</div>
<div class="line"><a name="l00377"></a><span class="lineno"> 377</span>  <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusFeature.html">ConsensusFeature</a> & <a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a> = input_map[i];</div>
<div class="line"><a name="l00378"></a><span class="lineno"> 378</span>  f.BaseFeature::operator=(<a class="code" href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">c</a>);</div>
<div class="line"><a name="l00379"></a><span class="lineno"> 379</span>  <span class="keywordflow">if</span> (!keep_uids) f.<a class="code" href="classOpenMS_1_1UniqueIdInterface.html#a9c908a735f82adb8f66a326547a9acf8">setUniqueId</a>();</div>
<div class="line"><a name="l00380"></a><span class="lineno"> 380</span>  }</div>
<div class="line"><a name="l00381"></a><span class="lineno"> 381</span> </div>
<div class="line"><a name="l00382"></a><span class="lineno"> 382</span>  output_map.<a class="code" href="classOpenMS_1_1FeatureMap.html#adda2fd1aa19da6622530d9073fbcf66d">updateRanges</a>();</div>
<div class="line"><a name="l00383"></a><span class="lineno"> 383</span>  }</div>
<div class="line"><a name="l00384"></a><span class="lineno"> 384</span> </div>
<div class="line"><a name="l00385"></a><span class="lineno"> 385</span>  <span class="comment">// Docu in base class</span></div>
<div class="line"><a name="l00386"></a><span class="lineno"> 386</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#adda2fd1aa19da6622530d9073fbcf66d">updateRanges</a>();</div>
<div class="line"><a name="l00387"></a><span class="lineno"> 387</span> </div>
<div class="line"><a name="l00389"></a><span class="lineno"> 389</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#acba0591900981bb045b43840136f5e8e">swap</a>(<a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & from);</div>
<div class="line"><a name="l00390"></a><span class="lineno"> 390</span> </div>
<div class="line"><a name="l00392"></a><span class="lineno"> 392</span>  OPENMS_DLLAPI <span class="keyword">const</span> std::vector<ProteinIdentification> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#acef58bf2531b77d0191c4780739281c6">getProteinIdentifications</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00393"></a><span class="lineno"> 393</span> </div>
<div class="line"><a name="l00395"></a><span class="lineno"> 395</span>  OPENMS_DLLAPI std::vector<ProteinIdentification> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#acef58bf2531b77d0191c4780739281c6">getProteinIdentifications</a>();</div>
<div class="line"><a name="l00396"></a><span class="lineno"> 396</span> </div>
<div class="line"><a name="l00398"></a><span class="lineno"> 398</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a6d85ac28bb82da988383fd19b8504988">setProteinIdentifications</a>(<span class="keyword">const</span> std::vector<ProteinIdentification> & protein_identifications);</div>
<div class="line"><a name="l00399"></a><span class="lineno"> 399</span> </div>
<div class="line"><a name="l00401"></a><span class="lineno"> 401</span>  OPENMS_DLLAPI <span class="keyword">const</span> std::vector<PeptideIdentification> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#a001ea2eb2a9c05266a69f50594f25604">getUnassignedPeptideIdentifications</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00402"></a><span class="lineno"> 402</span> </div>
<div class="line"><a name="l00404"></a><span class="lineno"> 404</span>  OPENMS_DLLAPI std::vector<PeptideIdentification> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#a001ea2eb2a9c05266a69f50594f25604">getUnassignedPeptideIdentifications</a>();</div>
<div class="line"><a name="l00405"></a><span class="lineno"> 405</span> </div>
<div class="line"><a name="l00407"></a><span class="lineno"> 407</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a37631ce8db66a5227a34ae2e40b22b8b">setUnassignedPeptideIdentifications</a>(<span class="keyword">const</span> std::vector<PeptideIdentification> & unassigned_peptide_identifications);</div>
<div class="line"><a name="l00408"></a><span class="lineno"> 408</span> </div>
<div class="line"><a name="l00410"></a><span class="lineno"> 410</span>  OPENMS_DLLAPI <span class="keyword">const</span> std::vector<DataProcessing> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#ae131ea2ec923582f86aa9805e72241ad">getDataProcessing</a>() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00411"></a><span class="lineno"> 411</span> </div>
<div class="line"><a name="l00413"></a><span class="lineno"> 413</span>  OPENMS_DLLAPI std::vector<DataProcessing> & <a class="code" href="classOpenMS_1_1ConsensusMap.html#ae131ea2ec923582f86aa9805e72241ad">getDataProcessing</a>();</div>
<div class="line"><a name="l00414"></a><span class="lineno"> 414</span> </div>
<div class="line"><a name="l00416"></a><span class="lineno"> 416</span>  OPENMS_DLLAPI <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a8b8822043dbf3e8451ff65ce4403a0e5">setDataProcessing</a>(<span class="keyword">const</span> std::vector<DataProcessing> & processing_method);</div>
<div class="line"><a name="l00417"></a><span class="lineno"> 417</span> </div>
<div class="line"><a name="l00419"></a><span class="lineno"> 419</span>  OPENMS_DLLAPI <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a3a3395bcd5ba6aae6f5bb66c3a91753a">operator==</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00420"></a><span class="lineno"> 420</span> </div>
<div class="line"><a name="l00422"></a><span class="lineno"> 422</span>  OPENMS_DLLAPI <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a7ec1deab30423312316b88f0e4c629cc">operator!=</a>(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & rhs) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00423"></a><span class="lineno"> 423</span> </div>
<div class="line"><a name="l00437"></a><span class="lineno"> 437</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> Type></div>
<div class="line"><a name="l00438"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a2ba4cf095974c86863027d78210dc2fa"> 438</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a2ba4cf095974c86863027d78210dc2fa">applyMemberFunction</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> (Type::* member_function)())</div>
<div class="line"><a name="l00439"></a><span class="lineno"> 439</span>  {</div>
<div class="line"><a name="l00440"></a><span class="lineno"> 440</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> assignments = 0;</div>
<div class="line"><a name="l00441"></a><span class="lineno"> 441</span>  assignments += ((*this).*member_function)();</div>
<div class="line"><a name="l00442"></a><span class="lineno"> 442</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ConsensusMap.html#a3932d0584af43e58f8859bba93b28c4f">Iterator</a> iter = this->begin(); iter != this->end(); ++iter)</div>
<div class="line"><a name="l00443"></a><span class="lineno"> 443</span>  {</div>
<div class="line"><a name="l00444"></a><span class="lineno"> 444</span>  assignments += ((*iter).*member_function)();</div>
<div class="line"><a name="l00445"></a><span class="lineno"> 445</span>  }</div>
<div class="line"><a name="l00446"></a><span class="lineno"> 446</span>  <span class="keywordflow">return</span> assignments;</div>
<div class="line"><a name="l00447"></a><span class="lineno"> 447</span>  }</div>
<div class="line"><a name="l00448"></a><span class="lineno"> 448</span> </div>
<div class="line"><a name="l00450"></a><span class="lineno"> 450</span>  <span class="keyword">template</span> <<span class="keyword">typename</span> Type></div>
<div class="line"><a name="l00451"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#ac4a24ec632c6289210b0db06d7f2af9f"> 451</a></span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> <a class="code" href="classOpenMS_1_1ConsensusMap.html#ac4a24ec632c6289210b0db06d7f2af9f">applyMemberFunction</a>(<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> (Type::* member_function)() <span class="keyword">const</span>)<span class="keyword"> const</span></div>
<div class="line"><a name="l00452"></a><span class="lineno"> 452</span> <span class="keyword"> </span>{</div>
<div class="line"><a name="l00453"></a><span class="lineno"> 453</span>  <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> assignments = 0;</div>
<div class="line"><a name="l00454"></a><span class="lineno"> 454</span>  assignments += ((*this).*member_function)();</div>
<div class="line"><a name="l00455"></a><span class="lineno"> 455</span>  <span class="keywordflow">for</span> (<a class="code" href="classOpenMS_1_1ConsensusMap.html#aa247b0d70b8d241fbe404d0e692c99b8">ConstIterator</a> iter = this->begin(); iter != this->end(); ++iter)</div>
<div class="line"><a name="l00456"></a><span class="lineno"> 456</span>  {</div>
<div class="line"><a name="l00457"></a><span class="lineno"> 457</span>  assignments += ((*iter).*member_function)();</div>
<div class="line"><a name="l00458"></a><span class="lineno"> 458</span>  }</div>
<div class="line"><a name="l00459"></a><span class="lineno"> 459</span>  <span class="keywordflow">return</span> assignments;</div>
<div class="line"><a name="l00460"></a><span class="lineno"> 460</span>  }</div>
<div class="line"><a name="l00461"></a><span class="lineno"> 461</span> </div>
<div class="line"><a name="l00474"></a><span class="lineno"> 474</span>  <span class="keywordtype">bool</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a380c513dab359f5fc067b41e2b75db43">isMapConsistent</a>(<a class="code" href="classOpenMS_1_1Logger_1_1LogStream.html">Logger::LogStream</a>* stream = 0) <span class="keyword">const</span>;</div>
<div class="line"><a name="l00475"></a><span class="lineno"> 475</span> </div>
<div class="line"><a name="l00476"></a><span class="lineno"> 476</span> <span class="keyword">protected</span>:</div>
<div class="line"><a name="l00477"></a><span class="lineno"> 477</span> </div>
<div class="line"><a name="l00479"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#adf3c5f4c9d22a5c79457a77450d1bd27"> 479</a></span>  <a class="code" href="classOpenMS_1_1Map.html">FileDescriptions</a> <a class="code" href="classOpenMS_1_1ConsensusMap.html#adf3c5f4c9d22a5c79457a77450d1bd27">file_description_</a>;</div>
<div class="line"><a name="l00480"></a><span class="lineno"> 480</span> </div>
<div class="line"><a name="l00482"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a06ffc0b467a566f59d9f5a5b2fc88142"> 482</a></span>  <a class="code" href="classOpenMS_1_1String.html">String</a> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a06ffc0b467a566f59d9f5a5b2fc88142">experiment_type_</a>;</div>
<div class="line"><a name="l00483"></a><span class="lineno"> 483</span> </div>
<div class="line"><a name="l00485"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#ad9d205c1045bb7a3b829070054db706f"> 485</a></span>  std::vector<ProteinIdentification> <a class="code" href="classOpenMS_1_1ConsensusMap.html#ad9d205c1045bb7a3b829070054db706f">protein_identifications_</a>;</div>
<div class="line"><a name="l00486"></a><span class="lineno"> 486</span> </div>
<div class="line"><a name="l00488"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#aab0c90b6e3119dc1ebfe70c37becce6c"> 488</a></span>  std::vector<PeptideIdentification> <a class="code" href="classOpenMS_1_1ConsensusMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">unassigned_peptide_identifications_</a>;</div>
<div class="line"><a name="l00489"></a><span class="lineno"> 489</span> </div>
<div class="line"><a name="l00491"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ConsensusMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63"> 491</a></span>  std::vector<DataProcessing> <a class="code" href="classOpenMS_1_1ConsensusMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">data_processing_</a>;</div>
<div class="line"><a name="l00492"></a><span class="lineno"> 492</span>  };</div>
<div class="line"><a name="l00493"></a><span class="lineno"> 493</span> </div>
<div class="line"><a name="l00495"></a><span class="lineno"> 495</span>  OPENMS_DLLAPI std::ostream & <a class="code" href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">operator<<</a>(std::ostream & os, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1ConsensusMap.html">ConsensusMap</a> & cons_map);</div>
<div class="line"><a name="l00496"></a><span class="lineno"> 496</span> </div>
<div class="line"><a name="l00497"></a><span class="lineno"> 497</span> } <span class="comment">// namespace OpenMS</span></div>
<div class="line"><a name="l00498"></a><span class="lineno"> 498</span> </div>
<div class="line"><a name="l00499"></a><span class="lineno"> 499</span> <span class="preprocessor">#endif // OPENMS_KERNEL_CONSENSUSMAP_H</span></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a8b8822043dbf3e8451ff65ce4403a0e5"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a8b8822043dbf3e8451ff65ce4403a0e5">OpenMS::ConsensusMap::setDataProcessing</a></div><div class="ttdeci">void setDataProcessing(const std::vector< DataProcessing > &processing_method)</div><div class="ttdoc">sets the description of the applied data processing </div></div>
<div class="ttc" id="UniqueIdIndexer_8h_html"><div class="ttname"><a href="UniqueIdIndexer_8h.html">UniqueIdIndexer.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a3932d0584af43e58f8859bba93b28c4f"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a3932d0584af43e58f8859bba93b28c4f">OpenMS::ConsensusMap::Iterator</a></div><div class="ttdeci">std::vector< ConsensusFeature >::iterator Iterator</div><div class="ttdoc">Mutable iterator. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:123</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a604ce6f3380b18acbebda3c1ed14e70c"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a604ce6f3380b18acbebda3c1ed14e70c">OpenMS::ConsensusMap::sortByMZ</a></div><div class="ttdeci">void sortByMZ()</div><div class="ttdoc">Sorts the peaks to m/z position. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_acef58bf2531b77d0191c4780739281c6"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#acef58bf2531b77d0191c4780739281c6">OpenMS::ConsensusMap::getProteinIdentifications</a></div><div class="ttdeci">const std::vector< ProteinIdentification > & getProteinIdentifications() const </div><div class="ttdoc">non-mutable access to the protein identifications </div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_a39cd3877560af16732f709348724f53a"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#a39cd3877560af16732f709348724f53a">OpenMS::MSExperiment::get2DData</a></div><div class="ttdeci">void get2DData(Container &cont) const </div><div class="ttdoc">Reads out a 2D Spectrum. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:248</div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a7b5660c6199fa9d5fef65974c7e3e733"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a7b5660c6199fa9d5fef65974c7e3e733">OpenMS::ConsensusMap::clear</a></div><div class="ttdeci">void clear(bool clear_meta_data=true)</div><div class="ttdoc">Clears all data and meta data. </div></div>
<div class="ttc" id="structOpenMS_1_1ConsensusMap_1_1FileDescription_html_aec69fbfab86b7473c3e6ccea79368f0f"><div class="ttname"><a href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#aec69fbfab86b7473c3e6ccea79368f0f">OpenMS::ConsensusMap::FileDescription::label</a></div><div class="ttdeci">String label</div><div class="ttdoc">Label e.g. &#39;heavy&#39; and &#39;light&#39; for ICAT, or &#39;sample1&#39; and &#39;sample2&#39; for label-free quantitation...</div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:109</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_acef58bf2531b77d0191c4780739281c6"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#acef58bf2531b77d0191c4780739281c6">OpenMS::FeatureMap::getProteinIdentifications</a></div><div class="ttdeci">const std::vector< ProteinIdentification > & getProteinIdentifications() const </div><div class="ttdoc">non-mutable access to the protein identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:410</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a6e2057b7fe81b9ede0225a46984df571"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a6e2057b7fe81b9ede0225a46984df571">OpenMS::ConsensusMap::ConstReverseIterator</a></div><div class="ttdeci">std::vector< ConsensusFeature >::const_reverse_iterator ConstReverseIterator</div><div class="ttdoc">Non-mutable reverse iterator. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:129</div></div>
<div class="ttc" id="structOpenMS_1_1ConsensusMap_1_1FileDescription_html"><div class="ttname"><a href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html">OpenMS::ConsensusMap::FileDescription</a></div><div class="ttdoc">Source file description for input files. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:97</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a001ea2eb2a9c05266a69f50594f25604"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a001ea2eb2a9c05266a69f50594f25604">OpenMS::ConsensusMap::getUnassignedPeptideIdentifications</a></div><div class="ttdeci">const std::vector< PeptideIdentification > & getUnassignedPeptideIdentifications() const </div><div class="ttdoc">non-mutable access to the unassigned peptide identifications </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a409f35fc16fe5b85dd576c79ae4e15c0"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a409f35fc16fe5b85dd576c79ae4e15c0">OpenMS::ConsensusMap::convert</a></div><div class="ttdeci">static void convert(ConsensusMap const &input_map, const bool keep_uids, FeatureMap< FeatureT > &output_map)</div><div class="ttdoc">Convert a ConsensusMap to a FeatureMap (of any feature type). </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:360</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html">OpenMS::FeatureMap</a></div><div class="ttdoc">A container for features. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:111</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_aab0c90b6e3119dc1ebfe70c37becce6c"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#aab0c90b6e3119dc1ebfe70c37becce6c">OpenMS::ConsensusMap::unassigned_peptide_identifications_</a></div><div class="ttdeci">std::vector< PeptideIdentification > unassigned_peptide_identifications_</div><div class="ttdoc">protein identifications </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:488</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_af06e9b6397019879824fd6a6f238bfb1"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#af06e9b6397019879824fd6a6f238bfb1">OpenMS::ConsensusMap::getFileDescriptions</a></div><div class="ttdeci">const FileDescriptions & getFileDescriptions() const </div><div class="ttdoc">Non-mutable access to the file descriptions. </div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a001ea2eb2a9c05266a69f50594f25604"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a001ea2eb2a9c05266a69f50594f25604">OpenMS::FeatureMap::getUnassignedPeptideIdentifications</a></div><div class="ttdeci">const std::vector< PeptideIdentification > & getUnassignedPeptideIdentifications() const </div><div class="ttdoc">non-mutable access to the unassigned peptide identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:428</div></div>
<div class="ttc" id="structOpenMS_1_1ConsensusMap_1_1FileDescription_html_a563c11f5d5ba0d20ba161a3e077fd2e3"><div class="ttname"><a href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#a563c11f5d5ba0d20ba161a3e077fd2e3">OpenMS::ConsensusMap::FileDescription::unique_id</a></div><div class="ttdeci">UInt64 unique_id</div><div class="ttdoc">Unique id of the file. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:114</div></div>
<div class="ttc" id="Map_8h_html"><div class="ttname"><a href="Map_8h.html">Map.h</a></div></div>
<div class="ttc" id="namespaceOpenMS_html_a74df8b74439d1f76961c8d987fb074fd"><div class="ttname"><a href="namespaceOpenMS.html#a74df8b74439d1f76961c8d987fb074fd">OpenMS::operator<<</a></div><div class="ttdeci">std::ostream & operator<<(std::ostream &os, const ItraqQuantifier::ItraqQuantifierStats &stats)</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_a9c908a735f82adb8f66a326547a9acf8"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#a9c908a735f82adb8f66a326547a9acf8">OpenMS::UniqueIdInterface::setUniqueId</a></div><div class="ttdeci">Size setUniqueId()</div><div class="ttdoc">Assigns a new, valid unique id. Always returns 1. </div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:150</div></div>
<div class="ttc" id="namespaceOpenMS_html_a74e80d32be63268d8a46039297e18cc6"><div class="ttname"><a href="namespaceOpenMS.html#a74e80d32be63268d8a46039297e18cc6">OpenMS::reverseComparator</a></div><div class="ttdeci">ReverseComparator< Cmp > reverseComparator(Cmp const &cmp)</div><div class="ttdoc">Make-function to create a ReverseComparator from another comparator without the need to specify the t...</div><div class="ttdef"><b>Definition:</b> ComparatorUtils.h:261</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html">OpenMS::ConsensusMap</a></div><div class="ttdoc">A container for consensus elements. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_abe20215d16b61fa78f24dab794497294"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#abe20215d16b61fa78f24dab794497294">OpenMS::ConsensusMap::sortByQuality</a></div><div class="ttdeci">void sortByQuality(bool reverse=false)</div><div class="ttdoc">Sorts the peaks according to ascending quality. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a2ba4cf095974c86863027d78210dc2fa"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a2ba4cf095974c86863027d78210dc2fa">OpenMS::ConsensusMap::applyMemberFunction</a></div><div class="ttdeci">Size applyMemberFunction(Size(Type::*member_function)())</div><div class="ttdoc">Applies a member function of Type to the container itself and all consensus features. The returned values are accumulated. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:438</div></div>
<div class="ttc" id="structOpenMS_1_1Peak2D_1_1IntensityLess_html"><div class="ttname"><a href="structOpenMS_1_1Peak2D_1_1IntensityLess.html">OpenMS::Peak2D::IntensityLess</a></div><div class="ttdef"><b>Definition:</b> Peak2D.h:246</div></div>
<div class="ttc" id="namespaceOpenMS_1_1Constants_html_a8fc6defe4e499b1b9b9c275689e44352"><div class="ttname"><a href="namespaceOpenMS_1_1Constants.html#a8fc6defe4e499b1b9b9c275689e44352">OpenMS::Constants::c</a></div><div class="ttdeci">const double c</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a50a6b2cdb2828e1f3e29c0096fd4ef63"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a50a6b2cdb2828e1f3e29c0096fd4ef63">OpenMS::ConsensusMap::data_processing_</a></div><div class="ttdeci">std::vector< DataProcessing > data_processing_</div><div class="ttdoc">applied data processing </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:491</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_af3fc434b747ad4f686744aca8fe9ef84"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#af3fc434b747ad4f686744aca8fe9ef84">OpenMS::ConsensusMap::setExperimentType</a></div><div class="ttdeci">void setExperimentType(const String &experiment_type)</div><div class="ttdoc">Mutable access to the experiment type. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a7e4c78c79368fccedda7e461aa830147"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a7e4c78c79368fccedda7e461aa830147">OpenMS::ConsensusMap::ConsensusMap</a></div><div class="ttdeci">ConsensusMap()</div><div class="ttdoc">Default constructor. </div></div>
<div class="ttc" id="classOpenMS_1_1Logger_1_1LogStream_html"><div class="ttname"><a href="classOpenMS_1_1Logger_1_1LogStream.html">OpenMS::Logger::LogStream</a></div><div class="ttdoc">Log Stream Class. </div><div class="ttdef"><b>Definition:</b> LogStream.h:303</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a599f8cdb4ba7eed59e5b5ea043f43d88"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a599f8cdb4ba7eed59e5b5ea043f43d88">OpenMS::ConsensusMap::~ConsensusMap</a></div><div class="ttdeci">~ConsensusMap()</div><div class="ttdoc">Destructor. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_aa42f45c3d16f8d854a52a8de49faa734"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#aa42f45c3d16f8d854a52a8de49faa734">OpenMS::ConsensusMap::getExperimentType</a></div><div class="ttdeci">const String & getExperimentType() const </div><div class="ttdoc">Non-mutable access to the experiment type. </div></div>
<div class="ttc" id="ComparatorUtils_8h_html"><div class="ttname"><a href="ComparatorUtils_8h.html">ComparatorUtils.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_af6f8ba65d3c875e1e6c58618301de25a"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#af6f8ba65d3c875e1e6c58618301de25a">OpenMS::ConsensusMap::convert</a></div><div class="ttdeci">static void convert(UInt64 const input_map_index, std::vector< Peak2D > &input_map, ConsensusMap &output_map, Size n=-1)</div><div class="ttdoc">Convert a vector of 2D Peaks (Peak2D) into a ConsensusMap. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:319</div></div>
<div class="ttc" id="MSExperiment_8h_html"><div class="ttname"><a href="MSExperiment_8h.html">MSExperiment.h</a></div></div>
<div class="ttc" id="ProteinIdentification_8h_html"><div class="ttname"><a href="ProteinIdentification_8h.html">ProteinIdentification.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_adf3c5f4c9d22a5c79457a77450d1bd27"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#adf3c5f4c9d22a5c79457a77450d1bd27">OpenMS::ConsensusMap::file_description_</a></div><div class="ttdeci">FileDescriptions file_description_</div><div class="ttdoc">Map from index to file description. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:479</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_abd9dec28283eb419db8e4d531893a901"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#abd9dec28283eb419db8e4d531893a901">OpenMS::ConsensusMap::ReverseIterator</a></div><div class="ttdeci">std::vector< ConsensusFeature >::reverse_iterator ReverseIterator</div><div class="ttdoc">Mutable reverse iterator. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:127</div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a6d85ac28bb82da988383fd19b8504988"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a6d85ac28bb82da988383fd19b8504988">OpenMS::FeatureMap::setProteinIdentifications</a></div><div class="ttdeci">void setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications)</div><div class="ttdoc">sets the protein identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:422</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a06ffc0b467a566f59d9f5a5b2fc88142"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a06ffc0b467a566f59d9f5a5b2fc88142">OpenMS::ConsensusMap::experiment_type_</a></div><div class="ttdeci">String experiment_type_</div><div class="ttdoc">type of experiment (label-free, itraq, ...); see xsd schema </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:482</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a32a2cc1b22a3a3f270385f02847fc41f"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a32a2cc1b22a3a3f270385f02847fc41f">OpenMS::ConsensusMap::Base</a></div><div class="ttdeci">std::vector< ConsensusFeature > Base</div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:119</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a4b00fc68dab08aa80d06f295999d8ade"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a4b00fc68dab08aa80d06f295999d8ade">OpenMS::ConsensusMap::sortByMaps</a></div><div class="ttdeci">void sortByMaps()</div><div class="ttdoc">Sorts with respect to the sets of maps covered by the consensus features (lexicographically). </div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdIndexer_html"><div class="ttname"><a href="classOpenMS_1_1UniqueIdIndexer.html">OpenMS::UniqueIdIndexer</a></div><div class="ttdoc">A base class for random access containers for classes derived from UniqueIdInterface that adds functi...</div><div class="ttdef"><b>Definition:</b> UniqueIdIndexer.h:63</div></div>
<div class="ttc" id="RangeManager_8h_html"><div class="ttname"><a href="RangeManager_8h.html">RangeManager.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_aa3516e447cd3c4ff4d1f2c90f828e9b2"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#aa3516e447cd3c4ff4d1f2c90f828e9b2">OpenMS::ConsensusMap::setFileDescriptions</a></div><div class="ttdeci">void setFileDescriptions(const FileDescriptions &file_description)</div><div class="ttdoc">Mutable access to the file descriptions. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a035217389fa12c02d059ddfb29c459e1"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a035217389fa12c02d059ddfb29c459e1">OpenMS::ConsensusMap::RangeManagerType</a></div><div class="ttdeci">RangeManager< 2 > RangeManagerType</div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:120</div></div>
<div class="ttc" id="classOpenMS_1_1Feature_html"><div class="ttname"><a href="classOpenMS_1_1Feature.html">OpenMS::Feature</a></div><div class="ttdoc">An LC-MS feature. </div><div class="ttdef"><b>Definition:</b> Feature.h:66</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a37631ce8db66a5227a34ae2e40b22b8b"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a37631ce8db66a5227a34ae2e40b22b8b">OpenMS::ConsensusMap::setUnassignedPeptideIdentifications</a></div><div class="ttdeci">void setUnassignedPeptideIdentifications(const std::vector< PeptideIdentification > &unassigned_peptide_identifications)</div><div class="ttdoc">sets the unassigned peptide identifications </div></div>
<div class="ttc" id="group__Concept_html_ga5162db95dc78bdf2e3a71d73bec703e9"><div class="ttname"><a href="group__Concept.html#ga5162db95dc78bdf2e3a71d73bec703e9">OpenMS::UInt64</a></div><div class="ttdeci">OPENMS_UINT64_TYPE UInt64</div><div class="ttdoc">Unsigned integer type (64bit) </div><div class="ttdef"><b>Definition:</b> Types.h:75</div></div>
<div class="ttc" id="classOpenMS_1_1MetaInfoInterface_html"><div class="ttname"><a href="classOpenMS_1_1MetaInfoInterface.html">OpenMS::MetaInfoInterface</a></div><div class="ttdoc">Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). </div><div class="ttdef"><b>Definition:</b> MetaInfoInterface.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html">OpenMS::UniqueIdInterface</a></div><div class="ttdoc">A base class defining a common interface for all classes having a unique id. </div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_ae131ea2ec923582f86aa9805e72241ad"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#ae131ea2ec923582f86aa9805e72241ad">OpenMS::ConsensusMap::getDataProcessing</a></div><div class="ttdeci">const std::vector< DataProcessing > & getDataProcessing() const </div><div class="ttdoc">returns a const reference to the description of the applied data processing </div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html">OpenMS::MSExperiment</a></div><div class="ttdoc">Representation of a mass spectrometry experiment. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:68</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_ad9d205c1045bb7a3b829070054db706f"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#ad9d205c1045bb7a3b829070054db706f">OpenMS::ConsensusMap::protein_identifications_</a></div><div class="ttdeci">std::vector< ProteinIdentification > protein_identifications_</div><div class="ttdoc">protein identifications </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:485</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_ae8509d3be6d8935837b78e9c7c40eb38"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#ae8509d3be6d8935837b78e9c7c40eb38">OpenMS::ConsensusMap::FileDescriptions</a></div><div class="ttdeci">Map< UInt64, FileDescription > FileDescriptions</div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:121</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a3043bd8fe62c3615c7f5dec91a40aad8"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a3043bd8fe62c3615c7f5dec91a40aad8">OpenMS::ConsensusMap::operator=</a></div><div class="ttdeci">ConsensusMap & operator=(const ConsensusMap &source)</div><div class="ttdoc">Assignment operator. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_ae48739acf91763132e117f8b608da145"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#ae48739acf91763132e117f8b608da145">OpenMS::ConsensusMap::convert</a></div><div class="ttdeci">static void convert(UInt64 const input_map_index, MSExperiment<> &input_map, ConsensusMap &output_map, Size n=-1)</div><div class="ttdoc">Similar to convert for FeatureMaps. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:269</div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_aac09407a6369916d487f3a83527b8398"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#aac09407a6369916d487f3a83527b8398">OpenMS::MSExperiment::getSize</a></div><div class="ttdeci">UInt64 getSize() const </div><div class="ttdoc">returns the total number of peaks </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:555</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a771c345052f7ce541a6b1fec88fa37c4"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a771c345052f7ce541a6b1fec88fa37c4">OpenMS::ConsensusMap::sortBySize</a></div><div class="ttdeci">void sortBySize()</div><div class="ttdoc">Sorts with respect to the size (number of elements) </div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_adda2fd1aa19da6622530d9073fbcf66d"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#adda2fd1aa19da6622530d9073fbcf66d">OpenMS::FeatureMap::updateRanges</a></div><div class="ttdeci">void updateRanges()</div><div class="ttdoc">Updates minimum and maximum position/intensity. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:343</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_af05c3613b1411d927984b2e59cb58353"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#af05c3613b1411d927984b2e59cb58353">OpenMS::ConsensusMap::privvec</a></div><div class="ttdeci">std::vector< ConsensusFeature > privvec</div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:70</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_acba0591900981bb045b43840136f5e8e"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#acba0591900981bb045b43840136f5e8e">OpenMS::ConsensusMap::swap</a></div><div class="ttdeci">void swap(ConsensusMap &from)</div><div class="ttdoc">Swaps the content of this map with the content of from. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_addd3e7ab2d02c8ff9377da76cf2fcaff"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#addd3e7ab2d02c8ff9377da76cf2fcaff">OpenMS::ConsensusMap::convert</a></div><div class="ttdeci">static void convert(UInt64 const input_map_index, FeatureMap< FeatureT > const &input_map, ConsensusMap &output_map, Size n=-1)</div><div class="ttdoc">Convert a FeatureMap (of any feature type) to a ConsensusMap. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:230</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a380c513dab359f5fc067b41e2b75db43"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a380c513dab359f5fc067b41e2b75db43">OpenMS::ConsensusMap::isMapConsistent</a></div><div class="ttdeci">bool isMapConsistent(Logger::LogStream *stream=0) const </div><div class="ttdoc">checks if the given maps are unique and all FeatureHandles actually refer to a registered map ...</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a3a3395bcd5ba6aae6f5bb66c3a91753a"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a3a3395bcd5ba6aae6f5bb66c3a91753a">OpenMS::ConsensusMap::operator==</a></div><div class="ttdeci">bool operator==(const ConsensusMap &rhs) const </div><div class="ttdoc">Equality operator. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a7ec1deab30423312316b88f0e4c629cc"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a7ec1deab30423312316b88f0e4c629cc">OpenMS::ConsensusMap::operator!=</a></div><div class="ttdeci">bool operator!=(const ConsensusMap &rhs) const </div><div class="ttdoc">Equality operator. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a86f7b200260209865e730a2e4fcaa628"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a86f7b200260209865e730a2e4fcaa628">OpenMS::ConsensusMap::sortByPosition</a></div><div class="ttdeci">void sortByPosition()</div><div class="ttdoc">Lexicographically sorts the peaks by their position (First RT then m/z). </div></div>
<div class="ttc" id="classOpenMS_1_1RangeManager_html"><div class="ttname"><a href="classOpenMS_1_1RangeManager.html">OpenMS::RangeManager</a></div><div class="ttdoc">Handles the managment of a position and intensity range. </div><div class="ttdef"><b>Definition:</b> RangeManager.h:48</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_adda2fd1aa19da6622530d9073fbcf66d"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#adda2fd1aa19da6622530d9073fbcf66d">OpenMS::ConsensusMap::updateRanges</a></div><div class="ttdeci">void updateRanges()</div><div class="ttdoc">Updates minimum and maximum position/intensity. </div></div>
<div class="ttc" id="classOpenMS_1_1MSExperiment_html_ae6cec659c6191c8cb73a1f6af8eba1cd"><div class="ttname"><a href="classOpenMS_1_1MSExperiment.html#ae6cec659c6191c8cb73a1f6af8eba1cd">OpenMS::MSExperiment::updateRanges</a></div><div class="ttdeci">virtual void updateRanges()</div><div class="ttdoc">Updates minimum and maximum position/intensity. </div><div class="ttdef"><b>Definition:</b> MSExperiment.h:403</div></div>
<div class="ttc" id="ConsensusFeature_8h_html"><div class="ttname"><a href="ConsensusFeature_8h.html">ConsensusFeature.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_aa247b0d70b8d241fbe404d0e692c99b8"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#aa247b0d70b8d241fbe404d0e692c99b8">OpenMS::ConsensusMap::ConstIterator</a></div><div class="ttdeci">std::vector< ConsensusFeature >::const_iterator ConstIterator</div><div class="ttdoc">Non-mutable iterator. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:125</div></div>
<div class="ttc" id="structOpenMS_1_1ConsensusMap_1_1FileDescription_html_ae59f2daabb9fbadf96ab4fceb44d6f77"><div class="ttname"><a href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#ae59f2daabb9fbadf96ab4fceb44d6f77">OpenMS::ConsensusMap::FileDescription::filename</a></div><div class="ttdeci">String filename</div><div class="ttdoc">File name of the file. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:107</div></div>
<div class="ttc" id="structOpenMS_1_1ConsensusMap_1_1FileDescription_html_a693887ab47dee6ab960fb1ef887c56cf"><div class="ttname"><a href="structOpenMS_1_1ConsensusMap_1_1FileDescription.html#a693887ab47dee6ab960fb1ef887c56cf">OpenMS::ConsensusMap::FileDescription::size</a></div><div class="ttdeci">Size size</div><div class="ttdoc">Number of elements (features, peaks, ...). This is e.g. used to check for correct element indices whe...</div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:112</div></div>
<div class="ttc" id="classOpenMS_1_1Map_html"><div class="ttname"><a href="classOpenMS_1_1Map.html">OpenMS::Map< UInt64, FileDescription ></a></div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a6d85ac28bb82da988383fd19b8504988"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a6d85ac28bb82da988383fd19b8504988">OpenMS::ConsensusMap::setProteinIdentifications</a></div><div class="ttdeci">void setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications)</div><div class="ttdoc">sets the protein identifications </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a13c4a8ce7f8275728e865728698173e6"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a13c4a8ce7f8275728e865728698173e6">OpenMS::ConsensusMap::sortByRT</a></div><div class="ttdeci">void sortByRT()</div><div class="ttdoc">Sorts the peaks to RT position. </div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a8e89143e2b323a0c0822b4898818adfd"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a8e89143e2b323a0c0822b4898818adfd">OpenMS::ConsensusMap::operator+=</a></div><div class="ttdeci">ConsensusMap & operator+=(const ConsensusMap &rhs)</div><div class="ttdoc">Add one consensus map to another. </div></div>
<div class="ttc" id="classOpenMS_1_1UniqueIdInterface_html_a0a9d0893724cca92411b6051f4ce3e16"><div class="ttname"><a href="classOpenMS_1_1UniqueIdInterface.html#a0a9d0893724cca92411b6051f4ce3e16">OpenMS::UniqueIdInterface::getUniqueId</a></div><div class="ttdeci">UInt64 getUniqueId() const </div><div class="ttdoc">Non-mutable access to unique id - returns the unique id. </div><div class="ttdef"><b>Definition:</b> UniqueIdInterface.h:109</div></div>
<div class="ttc" id="FeatureMap_8h_html"><div class="ttname"><a href="FeatureMap_8h.html">FeatureMap.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a7b5660c6199fa9d5fef65974c7e3e733"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a7b5660c6199fa9d5fef65974c7e3e733">OpenMS::FeatureMap::clear</a></div><div class="ttdeci">void clear(bool clear_meta_data=true)</div><div class="ttdoc">Clears all data and meta data. </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:468</div></div>
<div class="ttc" id="classOpenMS_1_1DocumentIdentifier_html"><div class="ttname"><a href="classOpenMS_1_1DocumentIdentifier.html">OpenMS::DocumentIdentifier</a></div><div class="ttdoc">Manage source document information. </div><div class="ttdef"><b>Definition:</b> DocumentIdentifier.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusFeature_html"><div class="ttname"><a href="classOpenMS_1_1ConsensusFeature.html">OpenMS::ConsensusFeature</a></div><div class="ttdoc">A 2-dimensional consensus feature. </div><div class="ttdef"><b>Definition:</b> ConsensusFeature.h:59</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_a93f1c9f620403aec160d98e83e125502"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#a93f1c9f620403aec160d98e83e125502">OpenMS::ConsensusMap::sortByIntensity</a></div><div class="ttdeci">void sortByIntensity(bool reverse=false)</div><div class="ttdoc">Sorts the peaks according to ascending intensity. </div></div>
<div class="ttc" id="classOpenMS_1_1FeatureMap_html_a37631ce8db66a5227a34ae2e40b22b8b"><div class="ttname"><a href="classOpenMS_1_1FeatureMap.html#a37631ce8db66a5227a34ae2e40b22b8b">OpenMS::FeatureMap::setUnassignedPeptideIdentifications</a></div><div class="ttdeci">void setUnassignedPeptideIdentifications(const std::vector< PeptideIdentification > &unassigned_peptide_identifications)</div><div class="ttdoc">sets the unassigned peptide identifications </div><div class="ttdef"><b>Definition:</b> FeatureMap.h:440</div></div>
<div class="ttc" id="classOpenMS_1_1ConsensusMap_html_ac4a24ec632c6289210b0db06d7f2af9f"><div class="ttname"><a href="classOpenMS_1_1ConsensusMap.html#ac4a24ec632c6289210b0db06d7f2af9f">OpenMS::ConsensusMap::applyMemberFunction</a></div><div class="ttdeci">Size applyMemberFunction(Size(Type::*member_function)() const) const </div><div class="ttdoc">The &quot;const&quot; variant. </div><div class="ttdef"><b>Definition:</b> ConsensusMap.h:451</div></div>
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