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<a href="ContinuousWaveletTransformNumIntegration_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
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<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor">#ifndef OPENMS_TRANSFORMATIONS_RAW2PEAK_CONTINUOUSWAVELETTRANSFORMNUMINTEGRATION_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_TRANSFORMATIONS_RAW2PEAK_CONTINUOUSWAVELETTRANSFORMNUMINTEGRATION_H</span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;cmath&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="MathFunctions_8h.html">OpenMS/MATH/MISC/MathFunctions.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="ContinuousWaveletTransform_8h.html">OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.h</a>&gt;</span></div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;</div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;</div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#include &lt;iostream&gt;</span></div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;<span class="preprocessor">#include &lt;fstream&gt;</span></div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;{</div>
<div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html">   57</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html">ContinuousWaveletTransformNumIntegration</a> :</div>
<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;    <span class="keyword">public</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html">ContinuousWaveletTransform</a></div>
<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;  {</div>
<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a04c36516132a7c8823c7cd19d26e41b8">   62</a></span>&#160;    <span class="keyword">typedef</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#ab7dc49f039c571f3f9374c2cf2707a3b">ContinuousWaveletTransform::PeakConstIterator</a> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a04c36516132a7c8823c7cd19d26e41b8">PeakConstIterator</a>;</div>
<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;</div>
<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;    <span class="keyword">using</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#aef0667170ea29951b8ae254a8f38c497">ContinuousWaveletTransform::signal_</a>;</div>
<div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    <span class="keyword">using</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#a1a352b796415b528e37d4e49a820c69a">ContinuousWaveletTransform::wavelet_</a>;</div>
<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    <span class="keyword">using</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#a10a612960934596534dc8a2f23b2e5af">ContinuousWaveletTransform::scale_</a>;</div>
<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    <span class="keyword">using</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#a60fac7ec2169fb31ba90ee55df9e2a23">ContinuousWaveletTransform::spacing_</a>;</div>
<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    <span class="keyword">using</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#a33d266e15575aa6246e061b14b3ea69d">ContinuousWaveletTransform::end_left_padding_</a>;</div>
<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;    <span class="keyword">using</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#a8174f101bded17656770830d412c25c6">ContinuousWaveletTransform::begin_right_padding_</a>;</div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    <span class="keyword">using</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html#ab9acd544e16486a5d1aa7cf27c2987ed">ContinuousWaveletTransform::signal_length_</a>;</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;</div>
<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;</div>
<div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#aa2b381cabf0375fe848db1667b0cc4fc">   74</a></span>&#160;    <a class="code" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#aa2b381cabf0375fe848db1667b0cc4fc">ContinuousWaveletTransformNumIntegration</a>() :</div>
<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;      <a class="code" href="classOpenMS_1_1ContinuousWaveletTransform.html">ContinuousWaveletTransform</a>()</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;    {}</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;</div>
<div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a9eeff87a73e78026befb418dbcba5501">   79</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a9eeff87a73e78026befb418dbcba5501">~ContinuousWaveletTransformNumIntegration</a>() {}</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">typename</span> InputPeakIterator&gt;</div>
<div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a8019148c30ed01c9243da4c7e1579926">   95</a></span>&#160;    <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a8019148c30ed01c9243da4c7e1579926">transform</a>(InputPeakIterator begin_input,</div>
<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;                   InputPeakIterator end_input,</div>
<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;                   <span class="keywordtype">float</span> resolution,</div>
<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;                   <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> zeros = 0)</div>
<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;    {</div>
<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;<span class="preprocessor"></span>      std::cout &lt;&lt; <span class="stringliteral">&quot;ContinuousWaveletTransformNumIntegration::transform: start &quot;</span> &lt;&lt; begin_input-&gt;getMZ() &lt;&lt; <span class="stringliteral">&quot; until &quot;</span> &lt;&lt; (end_input - 1)-&gt;getMZ() &lt;&lt; std::endl;</div>
<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;<span class="preprocessor"></span>      <span class="keywordflow">if</span> (fabs(resolution - 1) &lt; 0.0001)</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;      {</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;        <span class="comment">// resolution = 1 corresponds to the cwt at supporting points which have a distance corresponding to the minimal spacing in [begin_input,end_input)</span></div>
<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;        <a class="code" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> n = distance(begin_input, end_input);</div>
<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;        signal_length_ = n;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div>
<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;        signal_.clear();</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;        signal_.resize(n);</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;</div>
<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;        <span class="comment">// TODO avoid to compute the cwt for the zeros in signal</span></div>
<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;<span class="preprocessor"></span>        std::cout &lt;&lt; <span class="stringliteral">&quot;---------START TRANSFORM---------- \n&quot;</span>;</div>
<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;<span class="preprocessor"></span>        InputPeakIterator help = begin_input;</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; n; ++i)</div>
<div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;        {</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;          signal_[i].setMZ(help-&gt;getMZ());</div>
<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;          signal_[i].setIntensity((<a class="code" href="classOpenMS_1_1Peak1D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Peak1D::IntensityType</a>)integrate_(help, begin_input, end_input));</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;          ++help;</div>
<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;        }</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;<span class="preprocessor"></span>        std::cout &lt;&lt; <span class="stringliteral">&quot;---------END TRANSFORM----------&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;<span class="preprocessor"></span>        <span class="comment">// no zeropadding</span></div>
<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;        begin_right_padding_ = n;</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;        end_left_padding_ = -1;</div>
<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;      }</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;      {</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;        <a class="code" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> n = <a class="code" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a>(resolution * distance(begin_input, end_input));</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;        <span class="keywordtype">double</span> origin  = begin_input-&gt;getMZ();</div>
<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;        <span class="keywordtype">double</span> spacing = ((end_input - 1)-&gt;getMZ() - origin) / (n - 1);</div>
<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;</div>
<div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;        <span class="comment">// zero-padding at the ends?</span></div>
<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;        <span class="keywordflow">if</span> (zeros &gt; 0)</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;        {</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;          n += (2 * zeros);</div>
<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;        }</div>
<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;</div>
<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;</div>
<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;        std::vector&lt;double&gt; processed_input(n);</div>
<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;        signal_.clear();</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;        signal_.resize(n);</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;</div>
<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;        InputPeakIterator it_help = begin_input;</div>
<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;        <span class="keywordflow">if</span> (zeros &gt; 0)</div>
<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;        {</div>
<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;          processed_input[0] = it_help-&gt;getMZ() - zeros * spacing;</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;          <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; zeros; ++i) processed_input[i] = 0;</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;        }</div>
<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;        <span class="keywordflow">else</span> processed_input[0] = it_help-&gt;getIntensity();</div>
<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;</div>
<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        <span class="keywordtype">double</span> x;</div>
<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;        <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">SignedSize</a> <a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a> = 1; <a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a> &lt; n - (int)zeros; ++<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>)</div>
<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;        {</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;          x = origin + <a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a> * spacing;</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;          <span class="comment">// go to the real data point next to x</span></div>
<div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;          <span class="keywordflow">while</span> (((it_help + 1) &lt; end_input) &amp;&amp; ((it_help + 1)-&gt;getMZ() &lt; x))</div>
<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;          {</div>
<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;            ++it_help;</div>
<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;          }</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;          processed_input[<a class="code" href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">k</a>] = getInterpolatedValue_(x, it_help);</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;        }</div>
<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;        <span class="keywordflow">if</span> (zeros &gt; 0)</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;        {</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;          <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i = 0; i &lt; zeros; ++i) processed_input[n - zeros + i] = 0;</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;        }</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;</div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;        <span class="comment">// TODO avoid to compute the cwt for the zeros in signal</span></div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;        <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a> i = 0; i &lt; n; ++i)</div>
<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;        {</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;          signal_[i].setMZ(origin + i * spacing);</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;          signal_[i].setIntensity((<a class="code" href="classOpenMS_1_1Peak1D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">Peak1D::IntensityType</a>)integrate_(processed_input, spacing, i));</div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;        }</div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;</div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;        <span class="keywordflow">if</span> (zeros == 0)</div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;        {</div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;          begin_right_padding_ = n;</div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;          end_left_padding_ = -1;</div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;        }</div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;        <span class="keywordflow">else</span></div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;        {</div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;          begin_right_padding_ = n - zeros;</div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;          end_left_padding_ = zeros - 1;</div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;        }</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;      }</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;    }</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;    <span class="keyword">virtual</span> <span class="keywordtype">void</span> init(<span class="keywordtype">double</span> scale, <span class="keywordtype">double</span> spacing);</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;</div>
<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;<span class="keyword">protected</span>:</div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">typename</span> InputPeakIterator&gt;</div>
<div class="line"><a name="l00208"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a83ea5cd6da05562e7c3684becf1c6fc2">  208</a></span>&#160;    <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a83ea5cd6da05562e7c3684becf1c6fc2">integrate_</a>(InputPeakIterator x, InputPeakIterator first, InputPeakIterator last)</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;    {</div>
<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;<span class="preprocessor"></span>      std::cout &lt;&lt; <span class="stringliteral">&quot;integrate_&quot;</span> &lt;&lt; std::endl;</div>
<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;      <span class="keywordtype">double</span> v = 0.;</div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;      <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> middle = wavelet_.size();</div>
<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;      <span class="keywordtype">double</span> start_pos = ((x-&gt;getMZ() - (middle * spacing_)) &gt; first-&gt;getMZ()) ? (x-&gt;getMZ() - (middle * spacing_))</div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;                         : first-&gt;getMZ();</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;      <span class="keywordtype">double</span> end_pos = ((x-&gt;getMZ() + (middle * spacing_)) &lt; (last - 1)-&gt;getMZ()) ? (x-&gt;getMZ() + (middle * spacing_))</div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;                       : (last - 1)-&gt;getMZ();</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;      InputPeakIterator help = x;</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;<span class="preprocessor"></span>      std::cout &lt;&lt; <span class="stringliteral">&quot;integrate from middle to start_pos &quot;</span> &lt;&lt; help-&gt;getMZ() &lt;&lt; <span class="stringliteral">&quot; until &quot;</span> &lt;&lt; start_pos &lt;&lt; std::endl;</div>
<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;      <span class="comment">//integrate from middle to start_pos</span></div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;      <span class="keywordflow">while</span> ((help != first) &amp;&amp; ((help - 1)-&gt;getMZ() &gt; start_pos))</div>
<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;      {</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;        <span class="comment">// search for the corresponding datapoint of help in the wavelet (take the left most adjacent point)</span></div>
<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;        <span class="keywordtype">double</span> distance = fabs(x-&gt;getMZ() - help-&gt;getMZ());</div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;        <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index_w_r = (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>) <a class="code" href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">Math::round</a>(distance / spacing_);</div>
<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;        <span class="keywordflow">if</span> (index_w_r &gt;= wavelet_.size())</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;        {</div>
<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;          index_w_r = wavelet_.size() - 1;</div>
<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;        }</div>
<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;        <span class="keywordtype">double</span> wavelet_right =  wavelet_[index_w_r];</div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;</div>
<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;<span class="preprocessor"></span>        std::cout &lt;&lt; <span class="stringliteral">&quot;distance x help &quot;</span> &lt;&lt; distance &lt;&lt; std::endl;</div>
<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;distance in wavelet_ &quot;</span> &lt;&lt; index_w_r * spacing_ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;wavelet_right &quot;</span>  &lt;&lt;  wavelet_right &lt;&lt; std::endl;</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;        <span class="comment">// search for the corresponding datapoint for (help-1) in the wavelet (take the left most adjacent point)</span></div>
<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;        distance = fabs(x-&gt;getMZ() - (help - 1)-&gt;getMZ());</div>
<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;        <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index_w_l = (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>) <a class="code" href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">Math::round</a>(distance / spacing_);</div>
<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;        <span class="keywordflow">if</span> (index_w_l &gt;= wavelet_.size())</div>
<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;        {</div>
<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;          index_w_l = wavelet_.size() - 1;</div>
<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;        }</div>
<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;        <span class="keywordtype">double</span> wavelet_left =  wavelet_[index_w_l];</div>
<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;</div>
<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        <span class="comment">// start the interpolation for the true value in the wavelet</span></div>
<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;</div>
<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;<span class="preprocessor"></span>        std::cout &lt;&lt; <span class="stringliteral">&quot; help-1 &quot;</span> &lt;&lt; (help - 1)-&gt;getMZ() &lt;&lt; <span class="stringliteral">&quot; distance x, help-1&quot;</span> &lt;&lt; distance &lt;&lt; std::endl;</div>
<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;distance in wavelet_ &quot;</span> &lt;&lt; index_w_l * spacing_ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;wavelet_ at left &quot;</span> &lt;&lt;   wavelet_left &lt;&lt; std::endl;</div>
<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;</div>
<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot; intensity &quot;</span> &lt;&lt; fabs((help - 1)-&gt;getMZ() - help-&gt;getMZ()) / 2. &lt;&lt; <span class="stringliteral">&quot; * &quot;</span> &lt;&lt; (help - 1)-&gt;getIntensity() &lt;&lt; <span class="stringliteral">&quot; * &quot;</span> &lt;&lt; wavelet_left &lt;&lt; <span class="stringliteral">&quot; + &quot;</span> &lt;&lt; (help)-&gt;getIntensity() &lt;&lt; <span class="stringliteral">&quot;* &quot;</span> &lt;&lt; wavelet_right</div>
<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;                  &lt;&lt; std::endl;</div>
<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;        v += fabs((help - 1)-&gt;getMZ() - help-&gt;getMZ()) / 2. * ((help - 1)-&gt;getIntensity() * wavelet_left + help-&gt;getIntensity() * wavelet_right);</div>
<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;        --help;</div>
<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;      }</div>
<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;</div>
<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;</div>
<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;      <span class="comment">//integrate from middle to end_pos</span></div>
<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;      help = x;</div>
<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;<span class="preprocessor"></span>      std::cout &lt;&lt; <span class="stringliteral">&quot;integrate from middle to endpos &quot;</span> &lt;&lt; (help)-&gt;getMZ() &lt;&lt; <span class="stringliteral">&quot; until &quot;</span> &lt;&lt; end_pos &lt;&lt; std::endl;</div>
<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;<span class="preprocessor"></span>      <span class="keywordflow">while</span> ((help != (last - 1)) &amp;&amp; ((help + 1)-&gt;getMZ() &lt; end_pos))</div>
<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;      {</div>
<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;        <span class="comment">// search for the corresponding datapoint for help in the wavelet (take the left most adjacent point)</span></div>
<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;        <span class="keywordtype">double</span> distance = fabs(x-&gt;getMZ() - help-&gt;getMZ());</div>
<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;        <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index_w_l = (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>) <a class="code" href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">Math::round</a>(distance / spacing_);</div>
<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;        <span class="keywordflow">if</span> (index_w_l &gt;= wavelet_.size())</div>
<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;        {</div>
<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;          index_w_l = wavelet_.size() - 1;</div>
<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;        }</div>
<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;        <span class="keywordtype">double</span> wavelet_left =  wavelet_[index_w_l];</div>
<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;</div>
<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;<span class="preprocessor"></span>        std::cout &lt;&lt; <span class="stringliteral">&quot; help &quot;</span> &lt;&lt; (help)-&gt;getMZ() &lt;&lt; <span class="stringliteral">&quot; distance x, help&quot;</span> &lt;&lt; distance &lt;&lt; std::endl;</div>
<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;distance in wavelet_ &quot;</span> &lt;&lt; index_w_l * spacing_ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;wavelet_ at left &quot;</span> &lt;&lt;   wavelet_left &lt;&lt; std::endl;</div>
<div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;        <span class="comment">// search for the corresponding datapoint for (help+1) in the wavelet (take the left most adjacent point)</span></div>
<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;        distance = fabs(x-&gt;getMZ() - (help + 1)-&gt;getMZ());</div>
<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;        <a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> index_w_r = (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a>) <a class="code" href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">Math::round</a>(distance / spacing_);</div>
<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;        <span class="keywordflow">if</span> (index_w_r &gt;= wavelet_.size())</div>
<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;        {</div>
<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;          index_w_r = wavelet_.size() - 1;</div>
<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;        }</div>
<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;        <span class="keywordtype">double</span> wavelet_right =  wavelet_[index_w_r];</div>
<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;</div>
<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;<span class="preprocessor"></span>        std::cout &lt;&lt; <span class="stringliteral">&quot; help+1 &quot;</span> &lt;&lt; (help + 1)-&gt;getMZ() &lt;&lt; <span class="stringliteral">&quot; distance x, help+1&quot;</span> &lt;&lt; distance &lt;&lt; std::endl;</div>
<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;distance in wavelet_ &quot;</span> &lt;&lt; index_w_r * spacing_ &lt;&lt; std::endl;</div>
<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;        std::cout &lt;&lt; <span class="stringliteral">&quot;wavelet_ at right &quot;</span> &lt;&lt;   wavelet_right &lt;&lt; std::endl;</div>
<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;        v += fabs(help-&gt;getMZ() - (help + 1)-&gt;getMZ()) / 2. * (help-&gt;getIntensity() * wavelet_left + (help + 1)-&gt;getIntensity() * wavelet_right);</div>
<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;        ++help;</div>
<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;      }</div>
<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;</div>
<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;</div>
<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;<span class="preprocessor">#ifdef DEBUG_PEAK_PICKING</span></div>
<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;<span class="preprocessor"></span>      std::cout &lt;&lt; <span class="stringliteral">&quot;return&quot;</span> &lt;&lt; (v / sqrt(scale_)) &lt;&lt; std::endl;</div>
<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;<span class="preprocessor"></span>      <span class="keywordflow">return</span> v / sqrt(scale_);</div>
<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;    }</div>
<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;</div>
<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;    <span class="keywordtype">double</span> integrate_(<span class="keyword">const</span> std::vector&lt;double&gt; &amp; processed_input, <span class="keywordtype">double</span> spacing_data, <span class="keywordtype">int</span> index);</div>
<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;</div>
<div class="line"><a name="l00323"></a><span class="lineno"><a class="line" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#ab0a637258b78ee0c5e922bcd0ba33627">  323</a></span>&#160;    <span class="keyword">inline</span> <span class="keywordtype">double</span> <a class="code" href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#ab0a637258b78ee0c5e922bcd0ba33627">marr_</a>(<span class="keywordtype">double</span> x)</div>
<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;    {</div>
<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;      <span class="keywordflow">return</span> (1 - x * x) * exp(-x * x / 2);</div>
<div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;    }</div>
<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;</div>
<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;  };</div>
<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;} <span class="comment">//namespace OpenMS</span></div>
<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="namespaceOpenMS_1_1Constants_html_a93a8dc068053ec44ee7e45864ef969f7"><div class="ttname"><a href="namespaceOpenMS_1_1Constants.html#a93a8dc068053ec44ee7e45864ef969f7">OpenMS::Constants::k</a></div><div class="ttdeci">const double k</div></div>
<div class="ttc" id="MathFunctions_8h_html"><div class="ttname"><a href="MathFunctions_8h.html">MathFunctions.h</a></div></div>
<div class="ttc" id="ContinuousWaveletTransform_8h_html"><div class="ttname"><a href="ContinuousWaveletTransform_8h.html">ContinuousWaveletTransform.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransformNumIntegration_html_a04c36516132a7c8823c7cd19d26e41b8"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a04c36516132a7c8823c7cd19d26e41b8">OpenMS::ContinuousWaveletTransformNumIntegration::PeakConstIterator</a></div><div class="ttdeci">ContinuousWaveletTransform::PeakConstIterator PeakConstIterator</div><div class="ttdoc">Raw data const iterator type. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransformNumIntegration.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransformNumIntegration_html_a8019148c30ed01c9243da4c7e1579926"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a8019148c30ed01c9243da4c7e1579926">OpenMS::ContinuousWaveletTransformNumIntegration::transform</a></div><div class="ttdeci">void transform(InputPeakIterator begin_input, InputPeakIterator end_input, float resolution, unsigned int zeros=0)</div><div class="ttdoc">Computes the wavelet transform of a given raw data intervall [begin_input,end_input) ...</div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransformNumIntegration.h:95</div></div>
<div class="ttc" id="group__Concept_html_gae113cb41304c6692c7bf5d0624dc6f0f"><div class="ttname"><a href="group__Concept.html#gae113cb41304c6692c7bf5d0624dc6f0f">OpenMS::SignedSize</a></div><div class="ttdeci">ptrdiff_t SignedSize</div><div class="ttdoc">Signed Size type e.g. used as pointer difference. </div><div class="ttdef"><b>Definition:</b> Types.h:151</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_a10a612960934596534dc8a2f23b2e5af"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#a10a612960934596534dc8a2f23b2e5af">OpenMS::ContinuousWaveletTransform::scale_</a></div><div class="ttdeci">double scale_</div><div class="ttdoc">Spacing and scale of the wavelet and length of the signal. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:225</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html">OpenMS::ContinuousWaveletTransform</a></div><div class="ttdoc">This class is the base class of the continuous wavelet transformation. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:48</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransformNumIntegration_html"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html">OpenMS::ContinuousWaveletTransformNumIntegration</a></div><div class="ttdoc">This class computes the continuous wavelet transformation using a marr wavelet. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransformNumIntegration.h:57</div></div>
<div class="ttc" id="group__MathFunctionsMisc_html_ga3994eea4342458b8d83ae1984b72d6ac"><div class="ttname"><a href="group__MathFunctionsMisc.html#ga3994eea4342458b8d83ae1984b72d6ac">OpenMS::Math::round</a></div><div class="ttdeci">T round(T x)</div><div class="ttdoc">Rounds the value. </div><div class="ttdef"><b>Definition:</b> MathFunctions.h:135</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransformNumIntegration_html_a83ea5cd6da05562e7c3684becf1c6fc2"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a83ea5cd6da05562e7c3684becf1c6fc2">OpenMS::ContinuousWaveletTransformNumIntegration::integrate_</a></div><div class="ttdeci">double integrate_(InputPeakIterator x, InputPeakIterator first, InputPeakIterator last)</div><div class="ttdoc">Computes the convolution of the wavelet and the raw data at position x with resolution = 1...</div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransformNumIntegration.h:208</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_a8174f101bded17656770830d412c25c6"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#a8174f101bded17656770830d412c25c6">OpenMS::ContinuousWaveletTransform::begin_right_padding_</a></div><div class="ttdeci">SignedSize begin_right_padding_</div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:233</div></div>
<div class="ttc" id="classOpenMS_1_1Peak1D_html_a4a8c5b2adc05e9ff96a007385bfe9b47"><div class="ttname"><a href="classOpenMS_1_1Peak1D.html#a4a8c5b2adc05e9ff96a007385bfe9b47">OpenMS::Peak1D::IntensityType</a></div><div class="ttdeci">Real IntensityType</div><div class="ttdoc">Intensity type. </div><div class="ttdef"><b>Definition:</b> Peak1D.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransformNumIntegration_html_aa2b381cabf0375fe848db1667b0cc4fc"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#aa2b381cabf0375fe848db1667b0cc4fc">OpenMS::ContinuousWaveletTransformNumIntegration::ContinuousWaveletTransformNumIntegration</a></div><div class="ttdeci">ContinuousWaveletTransformNumIntegration()</div><div class="ttdoc">Constructor. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransformNumIntegration.h:74</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_a33d266e15575aa6246e061b14b3ea69d"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#a33d266e15575aa6246e061b14b3ea69d">OpenMS::ContinuousWaveletTransform::end_left_padding_</a></div><div class="ttdeci">SignedSize end_left_padding_</div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:232</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_ab9acd544e16486a5d1aa7cf27c2987ed"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#ab9acd544e16486a5d1aa7cf27c2987ed">OpenMS::ContinuousWaveletTransform::signal_length_</a></div><div class="ttdeci">SignedSize signal_length_</div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:227</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_aef0667170ea29951b8ae254a8f38c497"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#aef0667170ea29951b8ae254a8f38c497">OpenMS::ContinuousWaveletTransform::signal_</a></div><div class="ttdeci">std::vector&lt; Peak1D &gt; signal_</div><div class="ttdoc">The transformed signal. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:219</div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransformNumIntegration_html_a9eeff87a73e78026befb418dbcba5501"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#a9eeff87a73e78026befb418dbcba5501">OpenMS::ContinuousWaveletTransformNumIntegration::~ContinuousWaveletTransformNumIntegration</a></div><div class="ttdeci">virtual ~ContinuousWaveletTransformNumIntegration()</div><div class="ttdoc">Destructor. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransformNumIntegration.h:79</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransformNumIntegration_html_ab0a637258b78ee0c5e922bcd0ba33627"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransformNumIntegration.html#ab0a637258b78ee0c5e922bcd0ba33627">OpenMS::ContinuousWaveletTransformNumIntegration::marr_</a></div><div class="ttdeci">double marr_(double x)</div><div class="ttdoc">Computes the marr wavelet at position x. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransformNumIntegration.h:323</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_a1a352b796415b528e37d4e49a820c69a"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#a1a352b796415b528e37d4e49a820c69a">OpenMS::ContinuousWaveletTransform::wavelet_</a></div><div class="ttdeci">std::vector&lt; double &gt; wavelet_</div><div class="ttdoc">The pretabulated wavelet used for the transform. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:222</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_ab7dc49f039c571f3f9374c2cf2707a3b"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#ab7dc49f039c571f3f9374c2cf2707a3b">OpenMS::ContinuousWaveletTransform::PeakConstIterator</a></div><div class="ttdeci">std::vector&lt; Peak1D &gt;::const_iterator PeakConstIterator</div><div class="ttdoc">Raw data const iterator type. </div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1ContinuousWaveletTransform_html_a60fac7ec2169fb31ba90ee55df9e2a23"><div class="ttname"><a href="classOpenMS_1_1ContinuousWaveletTransform.html#a60fac7ec2169fb31ba90ee55df9e2a23">OpenMS::ContinuousWaveletTransform::spacing_</a></div><div class="ttdeci">double spacing_</div><div class="ttdef"><b>Definition:</b> ContinuousWaveletTransform.h:226</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
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