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<a href="DBAdapter_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">//                   OpenMS -- Open-Source Mass Spectrometry</span></div>
<div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,</span></div>
<div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment">// ETH Zurich, and Freie Universitaet Berlin 2002-2013.</span></div>
<div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">// This software is released under a three-clause BSD license:</span></div>
<div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">//  * Redistributions of source code must retain the above copyright</span></div>
<div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer.</span></div>
<div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment">//  * Redistributions in binary form must reproduce the above copyright</span></div>
<div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">//    notice, this list of conditions and the following disclaimer in the</span></div>
<div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">//    documentation and/or other materials provided with the distribution.</span></div>
<div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">//  * Neither the name of any author or any participating institution</span></div>
<div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">//    may be used to endorse or promote products derived from this software</span></div>
<div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment">//    without specific prior written permission.</span></div>
<div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">// For a full list of authors, refer to the file AUTHORS.</span></div>
<div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&quot;</span></div>
<div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="comment">// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE</span></div>
<div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="comment">// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE</span></div>
<div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;<span class="comment">// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING</span></div>
<div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="comment">// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,</span></div>
<div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="comment">// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,</span></div>
<div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="comment">// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;</span></div>
<div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="comment">// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,</span></div>
<div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="comment">// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR</span></div>
<div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="comment">// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF</span></div>
<div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;<span class="comment">// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</span></div>
<div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">//</span></div>
<div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="comment">// $Maintainer: $</span></div>
<div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="comment">// $Authors: Marc Sturm $</span></div>
<div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="comment">// --------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div>
<div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">#ifndef OPENMS_FORMAT_DB_DBADAPTER_H</span></div>
<div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="preprocessor"></span><span class="preprocessor">#define OPENMS_FORMAT_DB_DBADAPTER_H</span></div>
<div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="preprocessor"></span></div>
<div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;<span class="comment">//OpenMS includes</span></div>
<div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="MSExperiment_8h.html">OpenMS/KERNEL/MSExperiment.h</a>&gt;</span></div>
<div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="RichPeak1D_8h.html">OpenMS/KERNEL/RichPeak1D.h</a>&gt;</span></div>
<div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#include &lt;<a class="code" href="PeakFileOptions_8h.html">OpenMS/FORMAT/OPTIONS/PeakFileOptions.h</a>&gt;</span></div>
<div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;</div>
<div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="comment">//QT includes</span></div>
<div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;<span class="preprocessor">#include &lt;QtSql/QSqlQuery&gt;</span></div>
<div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;<span class="preprocessor">#include &lt;QtCore/QVariant&gt;</span></div>
<div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;<span class="preprocessor">#include &lt;QtCore/QDate&gt;</span></div>
<div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;</div>
<div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;<span class="comment">//std and STL includes</span></div>
<div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div>
<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div>
<div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;</div>
<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;<span class="keyword">namespace </span>OpenMS</div>
<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;{</div>
<div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;  <span class="keyword">class </span>DBConnection;</div>
<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;</div>
<div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DBAdapter.html">   69</a></span>&#160;  <span class="keyword">class </span>OPENMS_DLLAPI <a class="code" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a></div>
<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;  {</div>
<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;<span class="keyword">public</span>:</div>
<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a>(<a class="code" href="classOpenMS_1_1DBConnection.html">DBConnection</a> &amp; db_con);</div>
<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;</div>
<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;    ~<a class="code" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a>();</div>
<div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;</div>
<div class="line"><a name="l00079"></a><span class="lineno">   79</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">class</span> ExperimentType&gt;</div>
<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;    <span class="keywordtype">void</span> storeExperiment(ExperimentType &amp; exp);</div>
<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;</div>
<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">class</span> ExperimentType&gt;</div>
<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    <span class="keywordtype">void</span> loadExperiment(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, ExperimentType &amp; exp);</div>
<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;</div>
<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;    <span class="keyword">template</span> &lt;<span class="keyword">class</span> SpectrumType&gt;</div>
<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;    <span class="keywordtype">void</span> loadSpectrum(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, SpectrumType &amp; spec);</div>
<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;</div>
<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    <a class="code" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> &amp; getOptions();</div>
<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;</div>
<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> &amp; getOptions() <span class="keyword">const</span>;</div>
<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;</div>
<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;    <span class="keywordtype">bool</span> checkDBVersion(<span class="keywordtype">bool</span> warning);</div>
<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;</div>
<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;    <span class="keywordtype">void</span> createDB();</div>
<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;</div>
<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;<span class="keyword">private</span>:</div>
<div class="line"><a name="l00108"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">  108</a></span>&#160;    <a class="code" href="classOpenMS_1_1DBConnection.html">DBConnection</a> &amp; <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>;</div>
<div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div>
<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html">DBAdapter</a>();</div>
<div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;</div>
<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeMetaInfo_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; parent_table, <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &amp; info);</div>
<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeMetaInfo_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; parent_table, <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Peak1D.html">Peak1D</a> &amp; peak);</div>
<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeMetaInfo_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; parent_table, <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> &amp; peak);</div>
<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeMetaInfo_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; parent_table, <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Precursor.html">Precursor</a> &amp; peak);</div>
<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;</div>
<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    <span class="keywordtype">void</span> loadMetaInfo_(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, <a class="code" href="classOpenMS_1_1MetaInfoInterface.html">MetaInfoInterface</a> &amp; info);</div>
<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;    <span class="keywordtype">void</span> loadMetaInfo_(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, <a class="code" href="classOpenMS_1_1Peak1D.html">Peak1D</a> &amp; peak);</div>
<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;    <span class="keywordtype">void</span> loadMetaInfo_(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, <a class="code" href="classOpenMS_1_1RichPeak1D.html">RichPeak1D</a> &amp; peak);</div>
<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    <span class="keywordtype">void</span> loadMetaInfo_(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, <a class="code" href="classOpenMS_1_1Precursor.html">Precursor</a> &amp; peak);</div>
<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;</div>
<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    <span class="keywordtype">void</span> deleteMetaInfo_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; parent_table, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; condition);</div>
<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;</div>
<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeFile_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1String.html">String</a> &amp; parent_table, <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id, <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1SourceFile.html">SourceFile</a> &amp; file);</div>
<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;</div>
<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;    <span class="keywordtype">void</span> loadFile_(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, <a class="code" href="classOpenMS_1_1SourceFile.html">SourceFile</a> &amp; file);</div>
<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;</div>
<div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> storeSample_(<span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Sample.html">Sample</a> &amp; sample, <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> exp_id, <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id);</div>
<div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;</div>
<div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;    <span class="keywordtype">void</span> loadSample_(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, <a class="code" href="classOpenMS_1_1Sample.html">Sample</a> &amp; sample);</div>
<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;</div>
<div class="line"><a name="l00167"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">  167</a></span>&#160;    <a class="code" href="classOpenMS_1_1PeakFileOptions.html">PeakFileOptions</a> <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>;</div>
<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;  };</div>
<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;</div>
<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;</div>
<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;<span class="comment">//------------------------------------------- IMPLEMENTATION OF TEMPLATE METHODS ----------------------------------</span></div>
<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;</div>
<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;  <span class="keyword">template</span> &lt;<span class="keyword">class</span> ExperimentType&gt;</div>
<div class="line"><a name="l00174"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">  174</a></span>&#160;  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">DBAdapter::storeExperiment</a>(ExperimentType &amp; exp)</div>
<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;  {</div>
<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;    std::stringstream query;     <span class="comment">// query to build</span></div>
<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> end;                  <span class="comment">// end of the query that is added afer all fields</span></div>
<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> tmp;                  <span class="comment">// temporary data</span></div>
<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    <span class="keywordtype">bool</span> new_entry(<span class="keyword">false</span>);              <span class="comment">// stores if the current object is already in the DB</span></div>
<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    QSqlQuery result;            <span class="comment">// place to store the query results in</span></div>
<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    <span class="keywordtype">int</span> parent_id(-1);               <span class="comment">// stores parent_id of meta information</span></div>
<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> acquisition_info_id(0);     <span class="comment">// stores id of acquisition_info</span></div>
<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> meta_id(0);                 <span class="comment">// stores MetaInfo id of meta information that was just stored</span></div>
<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;</div>
<div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160;    <span class="comment">//------------------------------- CHECK DB VERSION ---------------------------------------</span></div>
<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;    <span class="keywordflow">if</span> (!<a class="code" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">checkDBVersion</a>(<span class="keyword">true</span>))</div>
<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;      <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;</div>
<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;</div>
<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;</div>
<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;    <span class="comment">//------------------------------- store EXPERIMENT ---------------------------------------</span></div>
<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;</div>
<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;    new_entry = (exp.getPersistenceId() == 0);</div>
<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;    <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;    {</div>
<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_MSExperiment SET &quot;</span>;</div>
<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;      end = <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;    }</div>
<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;    <span class="keywordflow">else</span></div>
<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;    {</div>
<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;UPDATE META_MSExperiment SET &quot;</span>;</div>
<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;      end = <span class="stringliteral">&quot; WHERE id=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp.getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;    }</div>
<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;    <span class="comment">//date</span></div>
<div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;    <span class="comment">//TODO make sure date and time are stored/loaded correctly</span></div>
<div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;Date=&#39;&quot;</span> &lt;&lt; exp.getDateTime().get() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;    <span class="comment">//description</span></div>
<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Description=&#39;&quot;</span> &lt;&lt; exp.getComment() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;    <span class="comment">//ExperimentalSettings FractionIdentifier</span></div>
<div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,FractionIdentifier=&#39;&quot;</span> &lt;&lt; exp.getFractionIdentifier() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;</div>
<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;    query &lt;&lt; end;</div>
<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;    <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;    {</div>
<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;      exp.setPersistenceId(<a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>());</div>
<div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;    }</div>
<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;</div>
<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_MSExperiment&quot;</span>, exp.getPersistenceId(), exp);</div>
<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;</div>
<div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160;    <span class="comment">//----------- store PROTEIN IDENTIFICATIONS/HITS / SEARCHPARAMETERS-----------------------</span></div>
<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;</div>
<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;    std::vector&lt;ProteinIdentification&gt; &amp; pi = exp.getProteinIdentifications();</div>
<div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;</div>
<div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;    <span class="comment">// first delete all old values, no matter whether we&#39;re updating or not</span></div>
<div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;    <span class="comment">// do we have to delete the MetaInfo as well?</span></div>
<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM ID_ProteinIdentification WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;</div>
<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;    <span class="keywordflow">for</span> (std::vector&lt;ProteinIdentification&gt;::const_iterator pi_it = pi.begin(); pi_it != pi.end(); pi_it++)</div>
<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;    {</div>
<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO ID_ProteinIdentification SET &quot;</span>;</div>
<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,SearchEngine=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchEngine() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,SearchEngineVersion=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchEngineVersion() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Date=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getDateTime().get() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ScoreType=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getScoreType() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,HigherScoreBetter=&#39;&quot;</span> &lt;&lt; pi_it-&gt;isHigherScoreBetter() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,SignificanceThreshold=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSignificanceThreshold() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;</div>
<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;      parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;</div>
<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;ID_ProteinIdentification&quot;</span>, parent_id, *pi_it);</div>
<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;      <span class="comment">//needs getter and setter methods first</span></div>
<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;      <span class="comment">//storeFile_(&quot;ID_ProteinIdentification&quot;, parent_id, pi_it-&gt;getSourceFile());</span></div>
<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;</div>
<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;      <span class="comment">//save the ProteinHits</span></div>
<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;ProteinHit&gt;::const_iterator ph_it = pi_it-&gt;getHits().begin(); ph_it != pi_it-&gt;getHits().end(); ph_it++)</div>
<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;      {</div>
<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO ID_ProteinHit SET &quot;</span>;</div>
<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_ProteinIdentification=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Score=&#39;&quot;</span> &lt;&lt; ph_it-&gt;getScore() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Accession=&#39;&quot;</span> &lt;&lt; ph_it-&gt;getAccession() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Sequence=&#39;&quot;</span> &lt;&lt; ph_it-&gt;getSequence() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Rank=&#39;&quot;</span> &lt;&lt; ph_it-&gt;getRank() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;</div>
<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;        meta_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;</div>
<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;ID_ProteinHit&quot;</span>, meta_id, *ph_it);</div>
<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;      }</div>
<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;</div>
<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;      <span class="comment">//save the searchparameters</span></div>
<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM ID_SearchParameters WHERE fid_ProteinIdentification=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;</div>
<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO ID_SearchParameters SET &quot;</span>;</div>
<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_ProteinIdentification=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,DB=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchParameters().db &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,DBVersion=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchParameters().db_version &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Taxonomy=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchParameters().taxonomy &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Charges=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchParameters().charges &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,MassType=&#39;&quot;</span> &lt;&lt; (1u + pi_it-&gt;getSearchParameters().mass_type) &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Enzyme=&#39;&quot;</span> &lt;&lt; (1u + pi_it-&gt;getSearchParameters().enzyme) &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,MissedCleavages=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchParameters().missed_cleavages &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,PeakMassTolerance=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchParameters().peak_mass_tolerance &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,PrecursorTolerance=&#39;&quot;</span> &lt;&lt; pi_it-&gt;getSearchParameters().precursor_tolerance &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;</div>
<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;</div>
<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;      meta_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;ID_SearchParameters&quot;</span>, meta_id, pi_it-&gt;getSearchParameters());</div>
<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;</div>
<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;      <span class="comment">//if modifications then save them</span></div>
<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM ID_FixedModifications WHERE fid_SearchParameters=&#39;&quot;</span> &lt;&lt; meta_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;</div>
<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;String&gt;::const_iterator mod_it = pi_it-&gt;getSearchParameters().fixed_modifications.begin(); mod_it != pi_it-&gt;getSearchParameters().fixed_modifications.end(); mod_it++)</div>
<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;      {</div>
<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;</div>
<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO ID_FixedModifications SET &quot;</span>;</div>
<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_SearchParameters=&#39;&quot;</span> &lt;&lt; meta_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,name=&#39;&quot;</span> &lt;&lt; *mod_it &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;</div>
<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;      }</div>
<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;String&gt;::const_iterator mod_it = pi_it-&gt;getSearchParameters().variable_modifications.begin(); mod_it != pi_it-&gt;getSearchParameters().variable_modifications.end(); mod_it++)</div>
<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;      {</div>
<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO ID_VariableModifications SET &quot;</span>;</div>
<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_SearchParameters=&#39;&quot;</span> &lt;&lt; meta_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,name=&#39;&quot;</span> &lt;&lt; *mod_it &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;</div>
<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;      }</div>
<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;    }</div>
<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;</div>
<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;</div>
<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;    <span class="comment">//-------------------------------- store SAMPLE ------------------------------------------</span></div>
<div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;</div>
<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_Sample&quot;</span>, <span class="stringliteral">&quot;fid_MSExperiment=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp.getPersistenceId()));</div>
<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;    <span class="comment">// this also deletes all references in META_SampleTreatment, META_Digestion and META_Modification by constraint</span></div>
<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_Sample WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#ae38edd7365e0241ed6b46b81ea5fe6ee">storeSample_</a>(exp.getSample(), exp.getPersistenceId(), 0);</div>
<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;</div>
<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;    <span class="comment">//-------------------------------- store CONTACTPERSON -----------------------------------</span></div>
<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;</div>
<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;    <span class="keyword">const</span> std::vector&lt;ContactPerson&gt; &amp; contacts = exp.getContacts();</div>
<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;</div>
<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_ContactPerson&quot;</span>, <span class="stringliteral">&quot;fid_MSExperiment=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp.getPersistenceId()));</div>
<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_ContactPerson WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;</div>
<div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;    <span class="keywordflow">for</span> (std::vector&lt;ContactPerson&gt;::const_iterator contact_it = contacts.begin(); contact_it != contacts.end(); contact_it++)</div>
<div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;    {</div>
<div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00348"></a><span class="lineno">  348</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_ContactPerson SET &quot;</span>;</div>
<div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,PreName=&#39;&quot;</span> &lt;&lt; contact_it-&gt;getFirstName() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,LastName=&#39;&quot;</span> &lt;&lt; contact_it-&gt;getLastName() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Affiliation=&#39;&quot;</span> &lt;&lt; contact_it-&gt;getInstitution() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00353"></a><span class="lineno">  353</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Email=&#39;&quot;</span> &lt;&lt; contact_it-&gt;getEmail() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00354"></a><span class="lineno">  354</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Comment=&#39;&quot;</span> &lt;&lt; contact_it-&gt;getContactInfo() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;</div>
<div class="line"><a name="l00356"></a><span class="lineno">  356</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00357"></a><span class="lineno">  357</span>&#160;      parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160;</div>
<div class="line"><a name="l00359"></a><span class="lineno">  359</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_ContactPerson&quot;</span>, parent_id, *contact_it);</div>
<div class="line"><a name="l00360"></a><span class="lineno">  360</span>&#160;    }</div>
<div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160;</div>
<div class="line"><a name="l00362"></a><span class="lineno">  362</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00363"></a><span class="lineno">  363</span>&#160;    <span class="comment">//-------------------------------------- store HPLC --------------------------------------</span></div>
<div class="line"><a name="l00364"></a><span class="lineno">  364</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00365"></a><span class="lineno">  365</span>&#160;</div>
<div class="line"><a name="l00366"></a><span class="lineno">  366</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1HPLC.html">HPLC</a> &amp; hplc = exp.getHPLC();</div>
<div class="line"><a name="l00367"></a><span class="lineno">  367</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00368"></a><span class="lineno">  368</span>&#160;</div>
<div class="line"><a name="l00369"></a><span class="lineno">  369</span>&#160;    <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00370"></a><span class="lineno">  370</span>&#160;    {</div>
<div class="line"><a name="l00371"></a><span class="lineno">  371</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_HPLC SET &quot;</span>;</div>
<div class="line"><a name="l00372"></a><span class="lineno">  372</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;,&quot;</span>;</div>
<div class="line"><a name="l00373"></a><span class="lineno">  373</span>&#160;      end = <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a name="l00374"></a><span class="lineno">  374</span>&#160;    }</div>
<div class="line"><a name="l00375"></a><span class="lineno">  375</span>&#160;    <span class="keywordflow">else</span></div>
<div class="line"><a name="l00376"></a><span class="lineno">  376</span>&#160;    {</div>
<div class="line"><a name="l00377"></a><span class="lineno">  377</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM META_HPLC WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00378"></a><span class="lineno">  378</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l00379"></a><span class="lineno">  379</span>&#160;      parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l00380"></a><span class="lineno">  380</span>&#160;</div>
<div class="line"><a name="l00381"></a><span class="lineno">  381</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00382"></a><span class="lineno">  382</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;UPDATE META_HPLC SET &quot;</span>;</div>
<div class="line"><a name="l00383"></a><span class="lineno">  383</span>&#160;      end = <span class="stringliteral">&quot; WHERE fid_MSExperiment=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp.getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00384"></a><span class="lineno">  384</span>&#160;    }</div>
<div class="line"><a name="l00385"></a><span class="lineno">  385</span>&#160;</div>
<div class="line"><a name="l00386"></a><span class="lineno">  386</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;InstrumentName=&#39;&quot;</span> &lt;&lt; hplc.<a class="code" href="classOpenMS_1_1HPLC.html#a7203e7128a52306e685cb04f0ddc756c">getInstrument</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00387"></a><span class="lineno">  387</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,ColumnName=&#39;&quot;</span> &lt;&lt; hplc.<a class="code" href="classOpenMS_1_1HPLC.html#a7f85e7384767cfef76bc5d30bb9888ee">getColumn</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00388"></a><span class="lineno">  388</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Description=&#39;&quot;</span> &lt;&lt; hplc.<a class="code" href="classOpenMS_1_1HPLC.html#aab4a6ffc575f5134842b0275bce5de7a">getComment</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00389"></a><span class="lineno">  389</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Flux=&quot;</span> &lt;&lt; hplc.<a class="code" href="classOpenMS_1_1HPLC.html#a6fe2c9238504babb49dce178380c69e9">getFlux</a>();</div>
<div class="line"><a name="l00390"></a><span class="lineno">  390</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Pressure=&quot;</span> &lt;&lt; hplc.<a class="code" href="classOpenMS_1_1HPLC.html#ac79b4a7512caa7c7700d61e0e9accaae">getPressure</a>();</div>
<div class="line"><a name="l00391"></a><span class="lineno">  391</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Temperature=&quot;</span> &lt;&lt; hplc.<a class="code" href="classOpenMS_1_1HPLC.html#aa2cdf2fabbf0210a4477b9c8fa746068">getTemperature</a>();</div>
<div class="line"><a name="l00392"></a><span class="lineno">  392</span>&#160;</div>
<div class="line"><a name="l00393"></a><span class="lineno">  393</span>&#160;    query &lt;&lt; end;</div>
<div class="line"><a name="l00394"></a><span class="lineno">  394</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00395"></a><span class="lineno">  395</span>&#160;</div>
<div class="line"><a name="l00396"></a><span class="lineno">  396</span>&#160;    <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00397"></a><span class="lineno">  397</span>&#160;    {</div>
<div class="line"><a name="l00398"></a><span class="lineno">  398</span>&#160;      parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00399"></a><span class="lineno">  399</span>&#160;    }</div>
<div class="line"><a name="l00400"></a><span class="lineno">  400</span>&#160;</div>
<div class="line"><a name="l00401"></a><span class="lineno">  401</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00402"></a><span class="lineno">  402</span>&#160;    <span class="comment">//------------------------- store GRADIENTEluent/Time/Percentage -------------------------</span></div>
<div class="line"><a name="l00403"></a><span class="lineno">  403</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00404"></a><span class="lineno">  404</span>&#160;</div>
<div class="line"><a name="l00405"></a><span class="lineno">  405</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Gradient.html">Gradient</a> &amp; gradient = exp.getHPLC().getGradient();</div>
<div class="line"><a name="l00406"></a><span class="lineno">  406</span>&#160;    <span class="keyword">const</span> std::vector&lt;String&gt; &amp; eluents = gradient.<a class="code" href="classOpenMS_1_1Gradient.html#a972de0061b9ae1f49d707ed7e2f4759a">getEluents</a>();</div>
<div class="line"><a name="l00407"></a><span class="lineno">  407</span>&#160;    <span class="keyword">const</span> std::vector&lt;Int&gt; &amp; time = gradient.<a class="code" href="classOpenMS_1_1Gradient.html#a03ce84fddeaaab05620cf0b0a61adc13">getTimepoints</a>();</div>
<div class="line"><a name="l00408"></a><span class="lineno">  408</span>&#160;    <span class="keyword">const</span> std::vector&lt;std::vector&lt;UInt&gt; &gt; &amp; percentages = gradient.<a class="code" href="classOpenMS_1_1Gradient.html#ae5e41d61e77f329411cf14d39e2a95b7">getPercentages</a>();</div>
<div class="line"><a name="l00409"></a><span class="lineno">  409</span>&#160;    std::stringstream query_eluents, query_time, query_percentages;</div>
<div class="line"><a name="l00410"></a><span class="lineno">  410</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> eluents_id(0), time_id(0);</div>
<div class="line"><a name="l00411"></a><span class="lineno">  411</span>&#160;</div>
<div class="line"><a name="l00412"></a><span class="lineno">  412</span>&#160;    <span class="comment">// this also deletes all references in META_GradientPercentage by constraint</span></div>
<div class="line"><a name="l00413"></a><span class="lineno">  413</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00414"></a><span class="lineno">  414</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_GradientEluent WHERE fid_HPLC=&quot;</span> &lt;&lt; parent_id;</div>
<div class="line"><a name="l00415"></a><span class="lineno">  415</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00416"></a><span class="lineno">  416</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00417"></a><span class="lineno">  417</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_GradientTime WHERE fid_HPLC=&quot;</span> &lt;&lt; parent_id;</div>
<div class="line"><a name="l00418"></a><span class="lineno">  418</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00419"></a><span class="lineno">  419</span>&#160;</div>
<div class="line"><a name="l00420"></a><span class="lineno">  420</span>&#160;    <span class="keywordflow">if</span> (!eluents.empty())</div>
<div class="line"><a name="l00421"></a><span class="lineno">  421</span>&#160;    {</div>
<div class="line"><a name="l00422"></a><span class="lineno">  422</span>&#160;      query_eluents.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00423"></a><span class="lineno">  423</span>&#160;      query_eluents &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_GradientEluent (fid_HPLC, Name) VALUES &quot;</span>;</div>
<div class="line"><a name="l00424"></a><span class="lineno">  424</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;String&gt;::const_iterator eluents_it = eluents.begin(); eluents_it != eluents.end(); eluents_it++)</div>
<div class="line"><a name="l00425"></a><span class="lineno">  425</span>&#160;      {</div>
<div class="line"><a name="l00426"></a><span class="lineno">  426</span>&#160;        query_eluents &lt;&lt; <span class="stringliteral">&quot;(&quot;</span>;</div>
<div class="line"><a name="l00427"></a><span class="lineno">  427</span>&#160;        query_eluents &lt;&lt; parent_id;</div>
<div class="line"><a name="l00428"></a><span class="lineno">  428</span>&#160;        query_eluents &lt;&lt; <span class="stringliteral">&quot;,&#39;&quot;</span> &lt;&lt; *eluents_it &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00429"></a><span class="lineno">  429</span>&#160;        query_eluents &lt;&lt; <span class="stringliteral">&quot;),&quot;</span>;</div>
<div class="line"><a name="l00430"></a><span class="lineno">  430</span>&#160;      }</div>
<div class="line"><a name="l00431"></a><span class="lineno">  431</span>&#160;      <span class="comment">// remove last &quot;,&quot;</span></div>
<div class="line"><a name="l00432"></a><span class="lineno">  432</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(<a class="code" href="classOpenMS_1_1String.html">String</a>(query_eluents.str()).chop(1));</div>
<div class="line"><a name="l00433"></a><span class="lineno">  433</span>&#160;      eluents_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00434"></a><span class="lineno">  434</span>&#160;    }</div>
<div class="line"><a name="l00435"></a><span class="lineno">  435</span>&#160;</div>
<div class="line"><a name="l00436"></a><span class="lineno">  436</span>&#160;    <span class="keywordflow">if</span> (!time.empty())</div>
<div class="line"><a name="l00437"></a><span class="lineno">  437</span>&#160;    {</div>
<div class="line"><a name="l00438"></a><span class="lineno">  438</span>&#160;      query_time.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00439"></a><span class="lineno">  439</span>&#160;      query_time &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_GradientTime (fid_HPLC, Time) VALUES &quot;</span>;</div>
<div class="line"><a name="l00440"></a><span class="lineno">  440</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;Int&gt;::const_iterator time_it = time.begin(); time_it != time.end(); time_it++)</div>
<div class="line"><a name="l00441"></a><span class="lineno">  441</span>&#160;      {</div>
<div class="line"><a name="l00442"></a><span class="lineno">  442</span>&#160;        query_time &lt;&lt; <span class="stringliteral">&quot;(&quot;</span>;</div>
<div class="line"><a name="l00443"></a><span class="lineno">  443</span>&#160;        query_time &lt;&lt; parent_id;</div>
<div class="line"><a name="l00444"></a><span class="lineno">  444</span>&#160;        query_time &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; *time_it;</div>
<div class="line"><a name="l00445"></a><span class="lineno">  445</span>&#160;        query_time &lt;&lt; <span class="stringliteral">&quot;),&quot;</span>;</div>
<div class="line"><a name="l00446"></a><span class="lineno">  446</span>&#160;      }</div>
<div class="line"><a name="l00447"></a><span class="lineno">  447</span>&#160;      <span class="comment">// remove last &quot;,&quot;</span></div>
<div class="line"><a name="l00448"></a><span class="lineno">  448</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(<a class="code" href="classOpenMS_1_1String.html">String</a>(query_time.str()).chop(1));</div>
<div class="line"><a name="l00449"></a><span class="lineno">  449</span>&#160;      time_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00450"></a><span class="lineno">  450</span>&#160;    }</div>
<div class="line"><a name="l00451"></a><span class="lineno">  451</span>&#160;</div>
<div class="line"><a name="l00452"></a><span class="lineno">  452</span>&#160;    <span class="keywordflow">if</span> (!percentages.empty() &amp;&amp; !eluents.empty() &amp;&amp; !time.empty())</div>
<div class="line"><a name="l00453"></a><span class="lineno">  453</span>&#160;    {</div>
<div class="line"><a name="l00454"></a><span class="lineno">  454</span>&#160;      query_percentages.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00455"></a><span class="lineno">  455</span>&#160;      query_percentages &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_GradientPercentage (fid_GradientEluent, fid_GradientTime, Percentage) VALUES &quot;</span>;</div>
<div class="line"><a name="l00456"></a><span class="lineno">  456</span>&#160;      <span class="keywordtype">int</span> i = 0;</div>
<div class="line"><a name="l00457"></a><span class="lineno">  457</span>&#160;      <span class="comment">// iterate over eluents</span></div>
<div class="line"><a name="l00458"></a><span class="lineno">  458</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;std::vector&lt;UInt&gt; &gt;::const_iterator percent_outer_it = percentages.begin(); percent_outer_it != percentages.end(); percent_outer_it++)</div>
<div class="line"><a name="l00459"></a><span class="lineno">  459</span>&#160;      {</div>
<div class="line"><a name="l00460"></a><span class="lineno">  460</span>&#160;        <span class="keywordtype">int</span> j = 0;</div>
<div class="line"><a name="l00461"></a><span class="lineno">  461</span>&#160;        <span class="comment">// iterate over timepoints</span></div>
<div class="line"><a name="l00462"></a><span class="lineno">  462</span>&#160;        <span class="keywordflow">for</span> (std::vector&lt;UInt&gt;::const_iterator percent_inner_it = (*percent_outer_it).begin(); percent_inner_it != (*percent_outer_it).end(); percent_inner_it++)</div>
<div class="line"><a name="l00463"></a><span class="lineno">  463</span>&#160;        {</div>
<div class="line"><a name="l00464"></a><span class="lineno">  464</span>&#160;          query_percentages &lt;&lt; <span class="stringliteral">&quot;(&quot;</span>;</div>
<div class="line"><a name="l00465"></a><span class="lineno">  465</span>&#160;          query_percentages &lt;&lt; eluents_id + i;</div>
<div class="line"><a name="l00466"></a><span class="lineno">  466</span>&#160;          query_percentages &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; time_id + j;</div>
<div class="line"><a name="l00467"></a><span class="lineno">  467</span>&#160;          query_percentages &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; *percent_inner_it;</div>
<div class="line"><a name="l00468"></a><span class="lineno">  468</span>&#160;          query_percentages &lt;&lt; <span class="stringliteral">&quot;),&quot;</span>;</div>
<div class="line"><a name="l00469"></a><span class="lineno">  469</span>&#160;          j++;</div>
<div class="line"><a name="l00470"></a><span class="lineno">  470</span>&#160;        }</div>
<div class="line"><a name="l00471"></a><span class="lineno">  471</span>&#160;        i++;</div>
<div class="line"><a name="l00472"></a><span class="lineno">  472</span>&#160;      }</div>
<div class="line"><a name="l00473"></a><span class="lineno">  473</span>&#160;      <span class="comment">// remove last &quot;,&quot;</span></div>
<div class="line"><a name="l00474"></a><span class="lineno">  474</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(<a class="code" href="classOpenMS_1_1String.html">String</a>(query_percentages.str()).chop(1));</div>
<div class="line"><a name="l00475"></a><span class="lineno">  475</span>&#160;    }</div>
<div class="line"><a name="l00476"></a><span class="lineno">  476</span>&#160;</div>
<div class="line"><a name="l00477"></a><span class="lineno">  477</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00478"></a><span class="lineno">  478</span>&#160;    <span class="comment">//--------------------------------- store INSTRUMENT -------------------------------------</span></div>
<div class="line"><a name="l00479"></a><span class="lineno">  479</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00480"></a><span class="lineno">  480</span>&#160;</div>
<div class="line"><a name="l00481"></a><span class="lineno">  481</span>&#160;    <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1Instrument.html">Instrument</a> &amp; instrument = exp.getInstrument();</div>
<div class="line"><a name="l00482"></a><span class="lineno">  482</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00483"></a><span class="lineno">  483</span>&#160;</div>
<div class="line"><a name="l00484"></a><span class="lineno">  484</span>&#160;    <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00485"></a><span class="lineno">  485</span>&#160;    {</div>
<div class="line"><a name="l00486"></a><span class="lineno">  486</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_MSInstrument SET &quot;</span>;</div>
<div class="line"><a name="l00487"></a><span class="lineno">  487</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;,&quot;</span>;</div>
<div class="line"><a name="l00488"></a><span class="lineno">  488</span>&#160;      end = <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a name="l00489"></a><span class="lineno">  489</span>&#160;    }</div>
<div class="line"><a name="l00490"></a><span class="lineno">  490</span>&#160;    <span class="keywordflow">else</span></div>
<div class="line"><a name="l00491"></a><span class="lineno">  491</span>&#160;    {</div>
<div class="line"><a name="l00492"></a><span class="lineno">  492</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM META_MSInstrument WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00493"></a><span class="lineno">  493</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l00494"></a><span class="lineno">  494</span>&#160;      parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l00495"></a><span class="lineno">  495</span>&#160;</div>
<div class="line"><a name="l00496"></a><span class="lineno">  496</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00497"></a><span class="lineno">  497</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;UPDATE META_MSInstrument SET &quot;</span>;</div>
<div class="line"><a name="l00498"></a><span class="lineno">  498</span>&#160;      end = <span class="stringliteral">&quot; WHERE fid_MSExperiment=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp.getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00499"></a><span class="lineno">  499</span>&#160;    }</div>
<div class="line"><a name="l00500"></a><span class="lineno">  500</span>&#160;</div>
<div class="line"><a name="l00501"></a><span class="lineno">  501</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;Model=&#39;&quot;</span> &lt;&lt; instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a307ba40c92040f24cb0b496fb5b58b88">getModel</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00502"></a><span class="lineno">  502</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Vendor=&#39;&quot;</span> &lt;&lt; instrument.<a class="code" href="classOpenMS_1_1Instrument.html#adeb3a96bea31dcca5dc2cba4d6e22cb5">getVendor</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00503"></a><span class="lineno">  503</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Description=&#39;&quot;</span> &lt;&lt; instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a935d3c82c309ed3c0ed94d5edb12ce08">getCustomizations</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,IonOpticsType=&#39;&quot;</span> &lt;&lt; (1u + instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a1a127ee8460671ffdc8de43f82f7de47">getIonOptics</a>()) &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00505"></a><span class="lineno">  505</span>&#160;</div>
<div class="line"><a name="l00506"></a><span class="lineno">  506</span>&#160;    query &lt;&lt; end;</div>
<div class="line"><a name="l00507"></a><span class="lineno">  507</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00508"></a><span class="lineno">  508</span>&#160;</div>
<div class="line"><a name="l00509"></a><span class="lineno">  509</span>&#160;    <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00510"></a><span class="lineno">  510</span>&#160;    {</div>
<div class="line"><a name="l00511"></a><span class="lineno">  511</span>&#160;      parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00512"></a><span class="lineno">  512</span>&#160;    }</div>
<div class="line"><a name="l00513"></a><span class="lineno">  513</span>&#160;</div>
<div class="line"><a name="l00514"></a><span class="lineno">  514</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_MSInstrument&quot;</span>, parent_id, instrument);</div>
<div class="line"><a name="l00515"></a><span class="lineno">  515</span>&#160;</div>
<div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_Software&quot;</span>, <span class="stringliteral">&quot;SoftwareApplicator=&#39;META_MSInstrument&#39; AND fid_SoftwareApplicator=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(parent_id));</div>
<div class="line"><a name="l00517"></a><span class="lineno">  517</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00518"></a><span class="lineno">  518</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_Software WHERE fid_SoftwareApplicator=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39; AND SoftwareApplicator=&#39;META_MSInstrument&#39;&quot;</span>;</div>
<div class="line"><a name="l00519"></a><span class="lineno">  519</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00520"></a><span class="lineno">  520</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00521"></a><span class="lineno">  521</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_Software SET &quot;</span>;</div>
<div class="line"><a name="l00522"></a><span class="lineno">  522</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;fid_SoftwareApplicator=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00523"></a><span class="lineno">  523</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,SoftwareApplicator=&#39;META_MSInstrument&#39;&quot;</span>;</div>
<div class="line"><a name="l00524"></a><span class="lineno">  524</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Name=&#39;&quot;</span> &lt;&lt; instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a219795d06917877c7d946a00f23e2319">getSoftware</a>().<a class="code" href="classOpenMS_1_1Software.html#aaee0f2845288173de9f6ad47e6ad31d5">getName</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00525"></a><span class="lineno">  525</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;,Version=&#39;&quot;</span> &lt;&lt; instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a219795d06917877c7d946a00f23e2319">getSoftware</a>().<a class="code" href="classOpenMS_1_1Software.html#ae6b3b4b6857bc1987282e2f29611dd41">getVersion</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00526"></a><span class="lineno">  526</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00527"></a><span class="lineno">  527</span>&#160;</div>
<div class="line"><a name="l00528"></a><span class="lineno">  528</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> software_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00529"></a><span class="lineno">  529</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_Software&quot;</span>, software_id, instrument.<a class="code" href="classOpenMS_1_1Instrument.html#a219795d06917877c7d946a00f23e2319">getSoftware</a>());</div>
<div class="line"><a name="l00530"></a><span class="lineno">  530</span>&#160;</div>
<div class="line"><a name="l00531"></a><span class="lineno">  531</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00532"></a><span class="lineno">  532</span>&#160;    <span class="comment">//----------------------------------- store IONDETECTOR ----------------------------------</span></div>
<div class="line"><a name="l00533"></a><span class="lineno">  533</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;    <span class="keyword">const</span> std::vector&lt;IonDetector&gt; &amp; detectors = exp.getInstrument().getIonDetectors();</div>
<div class="line"><a name="l00535"></a><span class="lineno">  535</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00536"></a><span class="lineno">  536</span>&#160;</div>
<div class="line"><a name="l00537"></a><span class="lineno">  537</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_IonDetector&quot;</span>, <span class="stringliteral">&quot;fid_MSInstrument=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(parent_id));</div>
<div class="line"><a name="l00538"></a><span class="lineno">  538</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_IonDetector WHERE fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00539"></a><span class="lineno">  539</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00540"></a><span class="lineno">  540</span>&#160;</div>
<div class="line"><a name="l00541"></a><span class="lineno">  541</span>&#160;    <span class="keywordflow">for</span> (std::vector&lt;IonDetector&gt;::const_iterator detectors_it = detectors.begin(); detectors_it != detectors.end(); detectors_it++)</div>
<div class="line"><a name="l00542"></a><span class="lineno">  542</span>&#160;    {</div>
<div class="line"><a name="l00543"></a><span class="lineno">  543</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00544"></a><span class="lineno">  544</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_IonDetector SET &quot;</span>;</div>
<div class="line"><a name="l00545"></a><span class="lineno">  545</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00546"></a><span class="lineno">  546</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,AcquisitionMode=&quot;</span> &lt;&lt; (1u + detectors_it-&gt;getAcquisitionMode());</div>
<div class="line"><a name="l00547"></a><span class="lineno">  547</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Type=&quot;</span> &lt;&lt; (1u + detectors_it-&gt;getType());</div>
<div class="line"><a name="l00548"></a><span class="lineno">  548</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Resolution=&quot;</span> &lt;&lt; detectors_it-&gt;getResolution();</div>
<div class="line"><a name="l00549"></a><span class="lineno">  549</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ADCSamplingFrequency=&quot;</span> &lt;&lt; detectors_it-&gt;getADCSamplingFrequency();</div>
<div class="line"><a name="l00550"></a><span class="lineno">  550</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,InstrumentOrder=&quot;</span> &lt;&lt; (detectors_it-&gt;getOrder());</div>
<div class="line"><a name="l00551"></a><span class="lineno">  551</span>&#160;</div>
<div class="line"><a name="l00552"></a><span class="lineno">  552</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00553"></a><span class="lineno">  553</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_IonDetector&quot;</span>, <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>(), *detectors_it);</div>
<div class="line"><a name="l00554"></a><span class="lineno">  554</span>&#160;    }</div>
<div class="line"><a name="l00555"></a><span class="lineno">  555</span>&#160;</div>
<div class="line"><a name="l00556"></a><span class="lineno">  556</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00557"></a><span class="lineno">  557</span>&#160;    <span class="comment">//------------------------------------- store IONSOURCE ----------------------------------</span></div>
<div class="line"><a name="l00558"></a><span class="lineno">  558</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00559"></a><span class="lineno">  559</span>&#160;</div>
<div class="line"><a name="l00560"></a><span class="lineno">  560</span>&#160;    <span class="keyword">const</span> std::vector&lt;IonSource&gt; &amp; sources = exp.getInstrument().getIonSources();</div>
<div class="line"><a name="l00561"></a><span class="lineno">  561</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00562"></a><span class="lineno">  562</span>&#160;</div>
<div class="line"><a name="l00563"></a><span class="lineno">  563</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_IonSource&quot;</span>, <span class="stringliteral">&quot;fid_MSInstrument=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(parent_id));</div>
<div class="line"><a name="l00564"></a><span class="lineno">  564</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_IonSource WHERE fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00565"></a><span class="lineno">  565</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00566"></a><span class="lineno">  566</span>&#160;</div>
<div class="line"><a name="l00567"></a><span class="lineno">  567</span>&#160;    <span class="keywordflow">for</span> (std::vector&lt;IonSource&gt;::const_iterator sources_it = sources.begin(); sources_it != sources.end(); sources_it++)</div>
<div class="line"><a name="l00568"></a><span class="lineno">  568</span>&#160;    {</div>
<div class="line"><a name="l00569"></a><span class="lineno">  569</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00570"></a><span class="lineno">  570</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_IonSource SET &quot;</span>;</div>
<div class="line"><a name="l00571"></a><span class="lineno">  571</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00572"></a><span class="lineno">  572</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,InletType=&quot;</span> &lt;&lt; (1u + sources_it-&gt;getInletType());</div>
<div class="line"><a name="l00573"></a><span class="lineno">  573</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,IonizationMethod=&quot;</span> &lt;&lt; (1u + sources_it-&gt;getIonizationMethod());</div>
<div class="line"><a name="l00574"></a><span class="lineno">  574</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,IonizationMode=&quot;</span> &lt;&lt; (1u + sources_it-&gt;getPolarity());</div>
<div class="line"><a name="l00575"></a><span class="lineno">  575</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,InstrumentOrder=&quot;</span> &lt;&lt; (sources_it-&gt;getOrder());</div>
<div class="line"><a name="l00576"></a><span class="lineno">  576</span>&#160;</div>
<div class="line"><a name="l00577"></a><span class="lineno">  577</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00578"></a><span class="lineno">  578</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_IonSource&quot;</span>, <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>(), *sources_it);</div>
<div class="line"><a name="l00579"></a><span class="lineno">  579</span>&#160;    }</div>
<div class="line"><a name="l00580"></a><span class="lineno">  580</span>&#160;</div>
<div class="line"><a name="l00581"></a><span class="lineno">  581</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00582"></a><span class="lineno">  582</span>&#160;    <span class="comment">//------------------------------------ store MASSANALYZER --------------------------------</span></div>
<div class="line"><a name="l00583"></a><span class="lineno">  583</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00584"></a><span class="lineno">  584</span>&#160;</div>
<div class="line"><a name="l00585"></a><span class="lineno">  585</span>&#160;    <span class="keyword">const</span> std::vector&lt;MassAnalyzer&gt; &amp; analyzers = exp.getInstrument().getMassAnalyzers();</div>
<div class="line"><a name="l00586"></a><span class="lineno">  586</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00587"></a><span class="lineno">  587</span>&#160;</div>
<div class="line"><a name="l00588"></a><span class="lineno">  588</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_MassAnalyzer&quot;</span>, <span class="stringliteral">&quot;fid_MSInstrument=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(parent_id));</div>
<div class="line"><a name="l00589"></a><span class="lineno">  589</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_MassAnalyzer WHERE fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00590"></a><span class="lineno">  590</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00591"></a><span class="lineno">  591</span>&#160;</div>
<div class="line"><a name="l00592"></a><span class="lineno">  592</span>&#160;    <span class="keywordflow">for</span> (std::vector&lt;MassAnalyzer&gt;::const_iterator analyzer_it = analyzers.begin(); analyzer_it != analyzers.end(); analyzer_it++)</div>
<div class="line"><a name="l00593"></a><span class="lineno">  593</span>&#160;    {</div>
<div class="line"><a name="l00594"></a><span class="lineno">  594</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00595"></a><span class="lineno">  595</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_MassAnalyzer SET &quot;</span>;</div>
<div class="line"><a name="l00596"></a><span class="lineno">  596</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00597"></a><span class="lineno">  597</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Accuracy=&quot;</span> &lt;&lt; analyzer_it-&gt;getAccuracy();</div>
<div class="line"><a name="l00598"></a><span class="lineno">  598</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,FinalMSExponent=&quot;</span> &lt;&lt; analyzer_it-&gt;getFinalMSExponent();</div>
<div class="line"><a name="l00599"></a><span class="lineno">  599</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,IsolationWidth=&quot;</span> &lt;&lt; analyzer_it-&gt;getIsolationWidth();</div>
<div class="line"><a name="l00600"></a><span class="lineno">  600</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,MagneticFieldStrength=&quot;</span> &lt;&lt; analyzer_it-&gt;getMagneticFieldStrength();</div>
<div class="line"><a name="l00601"></a><span class="lineno">  601</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ReflectronState=&quot;</span> &lt;&lt; (1u + analyzer_it-&gt;getReflectronState());</div>
<div class="line"><a name="l00602"></a><span class="lineno">  602</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Resolution=&quot;</span> &lt;&lt; analyzer_it-&gt;getResolution();</div>
<div class="line"><a name="l00603"></a><span class="lineno">  603</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ResolutionMethod=&quot;</span> &lt;&lt; (1u + analyzer_it-&gt;getResolutionMethod());</div>
<div class="line"><a name="l00604"></a><span class="lineno">  604</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ResolutionType=&quot;</span> &lt;&lt; (1u + analyzer_it-&gt;getResolutionType());</div>
<div class="line"><a name="l00605"></a><span class="lineno">  605</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ScanDirection=&quot;</span> &lt;&lt; (1u + analyzer_it-&gt;getScanDirection());</div>
<div class="line"><a name="l00606"></a><span class="lineno">  606</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ScanLaw=&quot;</span> &lt;&lt; (1u + analyzer_it-&gt;getScanLaw());</div>
<div class="line"><a name="l00607"></a><span class="lineno">  607</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ScanRate=&quot;</span> &lt;&lt; analyzer_it-&gt;getScanRate();</div>
<div class="line"><a name="l00608"></a><span class="lineno">  608</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,ScanTime=&quot;</span> &lt;&lt; analyzer_it-&gt;getScanTime();</div>
<div class="line"><a name="l00609"></a><span class="lineno">  609</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,TOFPathLength=&quot;</span> &lt;&lt; analyzer_it-&gt;getTOFTotalPathLength();</div>
<div class="line"><a name="l00610"></a><span class="lineno">  610</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Type=&quot;</span> &lt;&lt; (1u + analyzer_it-&gt;getType());</div>
<div class="line"><a name="l00611"></a><span class="lineno">  611</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,InstrumentOrder=&quot;</span> &lt;&lt; analyzer_it-&gt;getOrder();</div>
<div class="line"><a name="l00612"></a><span class="lineno">  612</span>&#160;</div>
<div class="line"><a name="l00613"></a><span class="lineno">  613</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00614"></a><span class="lineno">  614</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_MassAnalyzer&quot;</span>, <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>(), *analyzer_it);</div>
<div class="line"><a name="l00615"></a><span class="lineno">  615</span>&#160;    }</div>
<div class="line"><a name="l00616"></a><span class="lineno">  616</span>&#160;</div>
<div class="line"><a name="l00617"></a><span class="lineno">  617</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160;    <span class="comment">//------------------------------------- store SPECTRUM -----------------------------------</span></div>
<div class="line"><a name="l00619"></a><span class="lineno">  619</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00620"></a><span class="lineno">  620</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">typename</span> ExperimentType::Iterator exp_it = exp.begin(); exp_it != exp.end(); ++exp_it)</div>
<div class="line"><a name="l00621"></a><span class="lineno">  621</span>&#160;    {</div>
<div class="line"><a name="l00622"></a><span class="lineno">  622</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00623"></a><span class="lineno">  623</span>&#160;      new_entry = (exp_it-&gt;getPersistenceId() == 0);</div>
<div class="line"><a name="l00624"></a><span class="lineno">  624</span>&#160;      <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00625"></a><span class="lineno">  625</span>&#160;      {</div>
<div class="line"><a name="l00626"></a><span class="lineno">  626</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO DATA_Spectrum SET &quot;</span>;</div>
<div class="line"><a name="l00627"></a><span class="lineno">  627</span>&#160;        end = <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a name="l00628"></a><span class="lineno">  628</span>&#160;      }</div>
<div class="line"><a name="l00629"></a><span class="lineno">  629</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00630"></a><span class="lineno">  630</span>&#160;      {</div>
<div class="line"><a name="l00631"></a><span class="lineno">  631</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;UPDATE DATA_Spectrum SET &quot;</span>;</div>
<div class="line"><a name="l00632"></a><span class="lineno">  632</span>&#160;        end = <span class="stringliteral">&quot; WHERE id=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00633"></a><span class="lineno">  633</span>&#160;      }</div>
<div class="line"><a name="l00634"></a><span class="lineno">  634</span>&#160;      <span class="comment">//FC (MSExperiment)</span></div>
<div class="line"><a name="l00635"></a><span class="lineno">  635</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;fid_MSExperiment=&#39;&quot;</span> &lt;&lt; exp.getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00636"></a><span class="lineno">  636</span>&#160;      <span class="comment">//type</span></div>
<div class="line"><a name="l00637"></a><span class="lineno">  637</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Type=&quot;</span> &lt;&lt; (1u + exp_it-&gt;getType());</div>
<div class="line"><a name="l00638"></a><span class="lineno">  638</span>&#160;      <span class="comment">//RT</span></div>
<div class="line"><a name="l00639"></a><span class="lineno">  639</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,RetentionTime=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getRT() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00640"></a><span class="lineno">  640</span>&#160;      <span class="comment">//MS-Level</span></div>
<div class="line"><a name="l00641"></a><span class="lineno">  641</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,MSLevel=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getMSLevel() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00642"></a><span class="lineno">  642</span>&#160;      <span class="comment">//Description</span></div>
<div class="line"><a name="l00643"></a><span class="lineno">  643</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,Description=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getComment() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00644"></a><span class="lineno">  644</span>&#160;      <span class="comment">//nativeID</span></div>
<div class="line"><a name="l00645"></a><span class="lineno">  645</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;,NativeID=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getNativeID() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00646"></a><span class="lineno">  646</span>&#160;</div>
<div class="line"><a name="l00647"></a><span class="lineno">  647</span>&#160;      <span class="comment">//TODO: MassType (average/monoisotopic)</span></div>
<div class="line"><a name="l00648"></a><span class="lineno">  648</span>&#160;      <span class="comment">//TODO: TIC</span></div>
<div class="line"><a name="l00649"></a><span class="lineno">  649</span>&#160;</div>
<div class="line"><a name="l00650"></a><span class="lineno">  650</span>&#160;</div>
<div class="line"><a name="l00651"></a><span class="lineno">  651</span>&#160;      query &lt;&lt; end;</div>
<div class="line"><a name="l00652"></a><span class="lineno">  652</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00653"></a><span class="lineno">  653</span>&#160;      <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00654"></a><span class="lineno">  654</span>&#160;      {</div>
<div class="line"><a name="l00655"></a><span class="lineno">  655</span>&#160;        exp_it-&gt;setPersistenceId(<a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>());</div>
<div class="line"><a name="l00656"></a><span class="lineno">  656</span>&#160;      }</div>
<div class="line"><a name="l00657"></a><span class="lineno">  657</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#aca95bbdb59bcd3152d70f399e928b4a2">storeFile_</a>(<span class="stringliteral">&quot;DATA_Spectrum&quot;</span>, exp_it-&gt;getPersistenceId(), exp_it-&gt;getSourceFile());</div>
<div class="line"><a name="l00658"></a><span class="lineno">  658</span>&#160;      meta_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;DATA_Spectrum&quot;</span>, exp_it-&gt;getPersistenceId(), *exp_it);</div>
<div class="line"><a name="l00659"></a><span class="lineno">  659</span>&#160;</div>
<div class="line"><a name="l00660"></a><span class="lineno">  660</span>&#160;</div>
<div class="line"><a name="l00661"></a><span class="lineno">  661</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00662"></a><span class="lineno">  662</span>&#160;      <span class="comment">//----------------------------- store PEPTIDE IDENTIFICATIONS / HITS ---------------------</span></div>
<div class="line"><a name="l00663"></a><span class="lineno">  663</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00664"></a><span class="lineno">  664</span>&#160;</div>
<div class="line"><a name="l00665"></a><span class="lineno">  665</span>&#160;      std::vector&lt;PeptideIdentification&gt; &amp; pei = exp_it-&gt;getPeptideIdentifications();</div>
<div class="line"><a name="l00666"></a><span class="lineno">  666</span>&#160;</div>
<div class="line"><a name="l00667"></a><span class="lineno">  667</span>&#160;      <span class="comment">// first delete all old values, no matter whether we&#39;re updating or not</span></div>
<div class="line"><a name="l00668"></a><span class="lineno">  668</span>&#160;      <span class="comment">// do we have to delete the MetaInfo as well?</span></div>
<div class="line"><a name="l00669"></a><span class="lineno">  669</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00670"></a><span class="lineno">  670</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM ID_PeptideIdentification WHERE fid_Spectrum=&#39;&quot;</span>;</div>
<div class="line"><a name="l00671"></a><span class="lineno">  671</span>&#160;      query &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00672"></a><span class="lineno">  672</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00673"></a><span class="lineno">  673</span>&#160;</div>
<div class="line"><a name="l00674"></a><span class="lineno">  674</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;PeptideIdentification&gt;::const_iterator pei_it = pei.begin(); pei_it != pei.end(); pei_it++)</div>
<div class="line"><a name="l00675"></a><span class="lineno">  675</span>&#160;      {</div>
<div class="line"><a name="l00676"></a><span class="lineno">  676</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00677"></a><span class="lineno">  677</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO ID_PeptideIdentification SET &quot;</span>;</div>
<div class="line"><a name="l00678"></a><span class="lineno">  678</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_Spectrum=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00679"></a><span class="lineno">  679</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,SignificanceThreshold=&#39;&quot;</span> &lt;&lt; pei_it-&gt;getSignificanceThreshold() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00680"></a><span class="lineno">  680</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,ScoreType=&#39;&quot;</span> &lt;&lt; pei_it-&gt;getScoreType() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00681"></a><span class="lineno">  681</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,HigherScoreBetter=&#39;&quot;</span> &lt;&lt; pei_it-&gt;isHigherScoreBetter() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00682"></a><span class="lineno">  682</span>&#160;</div>
<div class="line"><a name="l00683"></a><span class="lineno">  683</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00684"></a><span class="lineno">  684</span>&#160;        parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00685"></a><span class="lineno">  685</span>&#160;</div>
<div class="line"><a name="l00686"></a><span class="lineno">  686</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;ID_PeptideIdentification&quot;</span>, parent_id, *pei_it);</div>
<div class="line"><a name="l00687"></a><span class="lineno">  687</span>&#160;        <span class="comment">//needs getter and setter methods first</span></div>
<div class="line"><a name="l00688"></a><span class="lineno">  688</span>&#160;        <span class="comment">//storeFile_(&quot;ID_PeptideIdentification&quot;, parent_id, pei_it-&gt;getSourceFile());</span></div>
<div class="line"><a name="l00689"></a><span class="lineno">  689</span>&#160;</div>
<div class="line"><a name="l00690"></a><span class="lineno">  690</span>&#160;        <span class="keywordflow">for</span> (std::vector&lt;PeptideHit&gt;::const_iterator peh_it = pei_it-&gt;getHits().begin(); peh_it != pei_it-&gt;getHits().end(); peh_it++)</div>
<div class="line"><a name="l00691"></a><span class="lineno">  691</span>&#160;        {</div>
<div class="line"><a name="l00692"></a><span class="lineno">  692</span>&#160;          query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00693"></a><span class="lineno">  693</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO ID_PeptideHit SET &quot;</span>;</div>
<div class="line"><a name="l00694"></a><span class="lineno">  694</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;fid_Identification=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00695"></a><span class="lineno">  695</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,Score=&#39;&quot;</span> &lt;&lt; peh_it-&gt;getScore() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00696"></a><span class="lineno">  696</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,charge=&#39;&quot;</span> &lt;&lt; peh_it-&gt;getCharge() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00697"></a><span class="lineno">  697</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,Sequence=&#39;&quot;</span> &lt;&lt; peh_it-&gt;getSequence() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00698"></a><span class="lineno">  698</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,AABefore=&#39;&quot;</span> &lt;&lt; peh_it-&gt;getAABefore() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00699"></a><span class="lineno">  699</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,AAAfter=&#39;&quot;</span> &lt;&lt; peh_it-&gt;getAAAfter() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00700"></a><span class="lineno">  700</span>&#160;</div>
<div class="line"><a name="l00701"></a><span class="lineno">  701</span>&#160;          result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00702"></a><span class="lineno">  702</span>&#160;          meta_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00703"></a><span class="lineno">  703</span>&#160;</div>
<div class="line"><a name="l00704"></a><span class="lineno">  704</span>&#160;          <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;ID_PeptideHit&quot;</span>, meta_id, *peh_it);</div>
<div class="line"><a name="l00705"></a><span class="lineno">  705</span>&#160;        }</div>
<div class="line"><a name="l00706"></a><span class="lineno">  706</span>&#160;      }</div>
<div class="line"><a name="l00707"></a><span class="lineno">  707</span>&#160;</div>
<div class="line"><a name="l00708"></a><span class="lineno">  708</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00709"></a><span class="lineno">  709</span>&#160;      <span class="comment">//------------------------------------ store PRECURSOR -----------------------------------</span></div>
<div class="line"><a name="l00710"></a><span class="lineno">  710</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00711"></a><span class="lineno">  711</span>&#160;</div>
<div class="line"><a name="l00712"></a><span class="lineno">  712</span>&#160;      <span class="comment">// first delete all old values, no matter whether we&#39;re updating or not</span></div>
<div class="line"><a name="l00713"></a><span class="lineno">  713</span>&#160;      <span class="comment">// do we have to delete the MetaInfo as well?</span></div>
<div class="line"><a name="l00714"></a><span class="lineno">  714</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00715"></a><span class="lineno">  715</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM DATA_Precursor WHERE fid_Spectrum=&#39;&quot;</span>;</div>
<div class="line"><a name="l00716"></a><span class="lineno">  716</span>&#160;      query &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00717"></a><span class="lineno">  717</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00718"></a><span class="lineno">  718</span>&#160;</div>
<div class="line"><a name="l00719"></a><span class="lineno">  719</span>&#160;</div>
<div class="line"><a name="l00720"></a><span class="lineno">  720</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> precs_it = 0; precs_it &lt; exp_it-&gt;getPrecursors().size(); precs_it++)</div>
<div class="line"><a name="l00721"></a><span class="lineno">  721</span>&#160;      {</div>
<div class="line"><a name="l00722"></a><span class="lineno">  722</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00723"></a><span class="lineno">  723</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO DATA_Precursor SET &quot;</span>;</div>
<div class="line"><a name="l00724"></a><span class="lineno">  724</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_Spectrum=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00725"></a><span class="lineno">  725</span>&#160;        <span class="comment">//Intensity</span></div>
<div class="line"><a name="l00726"></a><span class="lineno">  726</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Intensity=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPrecursors()[precs_it].getIntensity() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00727"></a><span class="lineno">  727</span>&#160;        <span class="comment">//mz</span></div>
<div class="line"><a name="l00728"></a><span class="lineno">  728</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,WindowMz=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPrecursors()[precs_it].getMZ() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00729"></a><span class="lineno">  729</span>&#160;        <span class="comment">//charge</span></div>
<div class="line"><a name="l00730"></a><span class="lineno">  730</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Charge=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPrecursors()[precs_it].getCharge() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00731"></a><span class="lineno">  731</span>&#160;        <span class="comment">//activation energy</span></div>
<div class="line"><a name="l00732"></a><span class="lineno">  732</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,ActivationEnergy=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPrecursors()[precs_it].getActivationEnergy() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00733"></a><span class="lineno">  733</span>&#160;        <span class="comment">//IsolationWindowLow</span></div>
<div class="line"><a name="l00734"></a><span class="lineno">  734</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,WindowLow=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPrecursors()[precs_it].getIsolationWindowLowerOffset() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00735"></a><span class="lineno">  735</span>&#160;        <span class="comment">//IsolationWindowUp</span></div>
<div class="line"><a name="l00736"></a><span class="lineno">  736</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,WindowUp=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPrecursors()[precs_it].getIsolationWindowUpperOffset() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00737"></a><span class="lineno">  737</span>&#160;</div>
<div class="line"><a name="l00738"></a><span class="lineno">  738</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00739"></a><span class="lineno">  739</span>&#160;        parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00740"></a><span class="lineno">  740</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;DATA_Precursor&quot;</span>, parent_id, exp_it-&gt;getPrecursors()[precs_it]);</div>
<div class="line"><a name="l00741"></a><span class="lineno">  741</span>&#160;</div>
<div class="line"><a name="l00742"></a><span class="lineno">  742</span>&#160;</div>
<div class="line"><a name="l00743"></a><span class="lineno">  743</span>&#160;        <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> pcs_it = 0; pcs_it &lt; exp_it-&gt;getPrecursors()[precs_it].getPossibleChargeStates().size(); ++pcs_it)</div>
<div class="line"><a name="l00744"></a><span class="lineno">  744</span>&#160;        {</div>
<div class="line"><a name="l00745"></a><span class="lineno">  745</span>&#160;          query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00746"></a><span class="lineno">  746</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO DATA_PrecursorPCS SET &quot;</span>;</div>
<div class="line"><a name="l00747"></a><span class="lineno">  747</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;fid_Precursor=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(parent_id) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00748"></a><span class="lineno">  748</span>&#160;          <span class="comment">//PossibleChargeStates</span></div>
<div class="line"><a name="l00749"></a><span class="lineno">  749</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,PossibleChargeStates=&#39;&quot;</span> &lt;&lt; (exp_it-&gt;getPrecursors()[precs_it].getPossibleChargeStates()[pcs_it]) &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00750"></a><span class="lineno">  750</span>&#160;          result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00751"></a><span class="lineno">  751</span>&#160;        }</div>
<div class="line"><a name="l00752"></a><span class="lineno">  752</span>&#160;</div>
<div class="line"><a name="l00753"></a><span class="lineno">  753</span>&#160;        <span class="keywordflow">for</span> (std::set&lt;Precursor::ActivationMethod&gt;::iterator am_it = exp_it-&gt;getPrecursors()[precs_it].getActivationMethods().begin(); am_it != exp_it-&gt;getPrecursors()[precs_it].getActivationMethods().end(); ++am_it)</div>
<div class="line"><a name="l00754"></a><span class="lineno">  754</span>&#160;        {</div>
<div class="line"><a name="l00755"></a><span class="lineno">  755</span>&#160;          query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00756"></a><span class="lineno">  756</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO DATA_PrecursorAM SET &quot;</span>;</div>
<div class="line"><a name="l00757"></a><span class="lineno">  757</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;fid_Precursor=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(parent_id) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00758"></a><span class="lineno">  758</span>&#160;          <span class="comment">//activation method</span></div>
<div class="line"><a name="l00759"></a><span class="lineno">  759</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,ActivationMethods=&quot;</span> &lt;&lt; (1u + *(am_it));</div>
<div class="line"><a name="l00760"></a><span class="lineno">  760</span>&#160;          result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00761"></a><span class="lineno">  761</span>&#160;        }</div>
<div class="line"><a name="l00762"></a><span class="lineno">  762</span>&#160;</div>
<div class="line"><a name="l00763"></a><span class="lineno">  763</span>&#160;      }</div>
<div class="line"><a name="l00764"></a><span class="lineno">  764</span>&#160;</div>
<div class="line"><a name="l00765"></a><span class="lineno">  765</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00766"></a><span class="lineno">  766</span>&#160;      <span class="comment">//------------------------------------- store PRODUCTS -----------------------------------</span></div>
<div class="line"><a name="l00767"></a><span class="lineno">  767</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00768"></a><span class="lineno">  768</span>&#160;</div>
<div class="line"><a name="l00769"></a><span class="lineno">  769</span>&#160;      <span class="comment">// first delete all old values, no matter whether we&#39;re updating or not</span></div>
<div class="line"><a name="l00770"></a><span class="lineno">  770</span>&#160;      <span class="comment">// do we have to delete the MetaInfo as well?</span></div>
<div class="line"><a name="l00771"></a><span class="lineno">  771</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00772"></a><span class="lineno">  772</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM DATA_Products WHERE fid_Spectrum=&#39;&quot;</span>;</div>
<div class="line"><a name="l00773"></a><span class="lineno">  773</span>&#160;      query &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00774"></a><span class="lineno">  774</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00775"></a><span class="lineno">  775</span>&#160;</div>
<div class="line"><a name="l00776"></a><span class="lineno">  776</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> precs_it = 0; precs_it &lt; exp_it-&gt;getProducts().size(); precs_it++)</div>
<div class="line"><a name="l00777"></a><span class="lineno">  777</span>&#160;      {</div>
<div class="line"><a name="l00778"></a><span class="lineno">  778</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00779"></a><span class="lineno">  779</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO DATA_Products SET &quot;</span>;</div>
<div class="line"><a name="l00780"></a><span class="lineno">  780</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_Spectrum=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00781"></a><span class="lineno">  781</span>&#160;        <span class="comment">//mz</span></div>
<div class="line"><a name="l00782"></a><span class="lineno">  782</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,WindowMz=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getProducts()[precs_it].getMZ() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00783"></a><span class="lineno">  783</span>&#160;        <span class="comment">//IsolationWindowLow</span></div>
<div class="line"><a name="l00784"></a><span class="lineno">  784</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,WindowLow=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getProducts()[precs_it].getIsolationWindowLowerOffset() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00785"></a><span class="lineno">  785</span>&#160;        <span class="comment">//IsolationWindowUp</span></div>
<div class="line"><a name="l00786"></a><span class="lineno">  786</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,WindowUp=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getProducts()[precs_it].getIsolationWindowUpperOffset() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00787"></a><span class="lineno">  787</span>&#160;</div>
<div class="line"><a name="l00788"></a><span class="lineno">  788</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00789"></a><span class="lineno">  789</span>&#160;        parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00790"></a><span class="lineno">  790</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;DATA_Products&quot;</span>, parent_id, exp_it-&gt;getProducts()[precs_it]);</div>
<div class="line"><a name="l00791"></a><span class="lineno">  791</span>&#160;      }</div>
<div class="line"><a name="l00792"></a><span class="lineno">  792</span>&#160;</div>
<div class="line"><a name="l00793"></a><span class="lineno">  793</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00794"></a><span class="lineno">  794</span>&#160;      <span class="comment">//--------------------------------------- store PEAKS ------------------------------------</span></div>
<div class="line"><a name="l00795"></a><span class="lineno">  795</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00796"></a><span class="lineno">  796</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00797"></a><span class="lineno">  797</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;DATA_Peak&quot;</span>, <span class="stringliteral">&quot;fid_Spectrum=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()));</div>
<div class="line"><a name="l00798"></a><span class="lineno">  798</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(<span class="stringliteral">&quot;DELETE FROM DATA_Peak WHERE fid_Spectrum=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()));</div>
<div class="line"><a name="l00799"></a><span class="lineno">  799</span>&#160;      <span class="keywordflow">if</span> (exp_it-&gt;size() != 0)</div>
<div class="line"><a name="l00800"></a><span class="lineno">  800</span>&#160;      {</div>
<div class="line"><a name="l00801"></a><span class="lineno">  801</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO DATA_Peak (fid_Spectrum,Intensity,mz) VALUES &quot;</span>;</div>
<div class="line"><a name="l00802"></a><span class="lineno">  802</span>&#160;        tmp = <span class="stringliteral">&quot;(&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()) + <span class="stringliteral">&quot;,&#39;&quot;</span>;</div>
<div class="line"><a name="l00803"></a><span class="lineno">  803</span>&#160;        <span class="keywordflow">for</span> (<span class="keyword">typename</span> ExperimentType::SpectrumType::Iterator spec_it = exp_it-&gt;begin(); spec_it != exp_it-&gt;end(); ++spec_it)</div>
<div class="line"><a name="l00804"></a><span class="lineno">  804</span>&#160;        {</div>
<div class="line"><a name="l00805"></a><span class="lineno">  805</span>&#160;          <span class="comment">//Foreign Key (Spectrum)</span></div>
<div class="line"><a name="l00806"></a><span class="lineno">  806</span>&#160;          query &lt;&lt; tmp;</div>
<div class="line"><a name="l00807"></a><span class="lineno">  807</span>&#160;          <span class="comment">//Intensity</span></div>
<div class="line"><a name="l00808"></a><span class="lineno">  808</span>&#160;          query &lt;&lt; spec_it-&gt;getIntensity() &lt;&lt; <span class="stringliteral">&quot;&#39;,&#39;&quot;</span>;</div>
<div class="line"><a name="l00809"></a><span class="lineno">  809</span>&#160;          <span class="comment">//mz</span></div>
<div class="line"><a name="l00810"></a><span class="lineno">  810</span>&#160;          query &lt;&lt; spec_it-&gt;getPosition() &lt;&lt; <span class="stringliteral">&quot;&#39;),&quot;</span>;</div>
<div class="line"><a name="l00811"></a><span class="lineno">  811</span>&#160;        }</div>
<div class="line"><a name="l00812"></a><span class="lineno">  812</span>&#160;        <span class="comment">// remove last &quot;,&quot;</span></div>
<div class="line"><a name="l00813"></a><span class="lineno">  813</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(<a class="code" href="classOpenMS_1_1String.html">String</a>(query.str()).chop(1));</div>
<div class="line"><a name="l00814"></a><span class="lineno">  814</span>&#160;      }</div>
<div class="line"><a name="l00815"></a><span class="lineno">  815</span>&#160;      <span class="comment">// We know that all inserted peaks have IDs beginning from last_insert_id() (= ID of first inserted entry</span></div>
<div class="line"><a name="l00816"></a><span class="lineno">  816</span>&#160;      <span class="comment">// of last insert operation), so we can insert Meta Information without actually fetching the ID</span></div>
<div class="line"><a name="l00817"></a><span class="lineno">  817</span>&#160;      <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> insert_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00818"></a><span class="lineno">  818</span>&#160;      <span class="keywordflow">for</span> (<span class="keyword">typename</span> ExperimentType::SpectrumType::Iterator spec_it = exp_it-&gt;begin(); spec_it != exp_it-&gt;end(); ++spec_it)</div>
<div class="line"><a name="l00819"></a><span class="lineno">  819</span>&#160;      {</div>
<div class="line"><a name="l00820"></a><span class="lineno">  820</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;DATA_Peak&quot;</span>, insert_id, *spec_it);</div>
<div class="line"><a name="l00821"></a><span class="lineno">  821</span>&#160;        insert_id++;</div>
<div class="line"><a name="l00822"></a><span class="lineno">  822</span>&#160;      }</div>
<div class="line"><a name="l00823"></a><span class="lineno">  823</span>&#160;</div>
<div class="line"><a name="l00824"></a><span class="lineno">  824</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00825"></a><span class="lineno">  825</span>&#160;      <span class="comment">//-------------------- store METAINFODESCRIPTION / METADATAARRAYS  -----------------------</span></div>
<div class="line"><a name="l00826"></a><span class="lineno">  826</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00827"></a><span class="lineno">  827</span>&#160;</div>
<div class="line"><a name="l00828"></a><span class="lineno">  828</span>&#160;      <span class="keyword">const</span> <span class="keyword">typename</span> ExperimentType::SpectrumType::FloatDataArrays &amp; meta_data_arrays = exp_it-&gt;getFloatDataArrays();</div>
<div class="line"><a name="l00829"></a><span class="lineno">  829</span>&#160;</div>
<div class="line"><a name="l00830"></a><span class="lineno">  830</span>&#160;      <span class="keywordflow">for</span> (<span class="keyword">typename</span> ExperimentType::SpectrumType::FloatDataArrays::const_iterator mdarrays_it = meta_data_arrays.begin(); mdarrays_it != meta_data_arrays.end(); ++mdarrays_it)</div>
<div class="line"><a name="l00831"></a><span class="lineno">  831</span>&#160;      {</div>
<div class="line"><a name="l00832"></a><span class="lineno">  832</span>&#160;        <span class="comment">// first check if there is already an entry in META_MetaInfoDescription for this spectrum and this name</span></div>
<div class="line"><a name="l00833"></a><span class="lineno">  833</span>&#160;        <span class="comment">// We cannot simply delete all entries for the spectrum because this might leave unreferenced META_TNVs</span></div>
<div class="line"><a name="l00834"></a><span class="lineno">  834</span>&#160;        <span class="comment">// and META_MetaInfos in the database.</span></div>
<div class="line"><a name="l00835"></a><span class="lineno">  835</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00836"></a><span class="lineno">  836</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM META_MetaInfoDescription WHERE fid_Spectrum=&quot;</span>;</div>
<div class="line"><a name="l00837"></a><span class="lineno">  837</span>&#160;        query &lt;&lt; exp_it-&gt;getPersistenceId();</div>
<div class="line"><a name="l00838"></a><span class="lineno">  838</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot; AND Name=&#39;&quot;</span> &lt;&lt; mdarrays_it-&gt;getName() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00839"></a><span class="lineno">  839</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00840"></a><span class="lineno">  840</span>&#160;</div>
<div class="line"><a name="l00841"></a><span class="lineno">  841</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00842"></a><span class="lineno">  842</span>&#160;</div>
<div class="line"><a name="l00843"></a><span class="lineno">  843</span>&#160;        <span class="keywordflow">if</span> (result.size() &gt; 0)</div>
<div class="line"><a name="l00844"></a><span class="lineno">  844</span>&#160;        {</div>
<div class="line"><a name="l00845"></a><span class="lineno">  845</span>&#160;          parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l00846"></a><span class="lineno">  846</span>&#160;          new_entry = <span class="keyword">false</span>;</div>
<div class="line"><a name="l00847"></a><span class="lineno">  847</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;UPDATE META_MetaInfoDescription SET &quot;</span>;</div>
<div class="line"><a name="l00848"></a><span class="lineno">  848</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;Name=&#39;&quot;</span> + mdarrays_it-&gt;getName() + <span class="stringliteral">&quot;&#39; &quot;</span>;           <span class="comment">//TODO</span></div>
<div class="line"><a name="l00849"></a><span class="lineno">  849</span>&#160;          end  = <span class="stringliteral">&quot; WHERE fid_Spectrum=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId());</div>
<div class="line"><a name="l00850"></a><span class="lineno">  850</span>&#160;          end += <span class="stringliteral">&quot; AND Name=&#39;&quot;</span> + mdarrays_it-&gt;getName() + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00851"></a><span class="lineno">  851</span>&#160;        }</div>
<div class="line"><a name="l00852"></a><span class="lineno">  852</span>&#160;        <span class="keywordflow">else</span></div>
<div class="line"><a name="l00853"></a><span class="lineno">  853</span>&#160;        {</div>
<div class="line"><a name="l00854"></a><span class="lineno">  854</span>&#160;          new_entry = <span class="keyword">true</span>;</div>
<div class="line"><a name="l00855"></a><span class="lineno">  855</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_MetaInfoDescription SET &quot;</span>;</div>
<div class="line"><a name="l00856"></a><span class="lineno">  856</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;fid_Spectrum=&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;, &quot;</span>;</div>
<div class="line"><a name="l00857"></a><span class="lineno">  857</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;Name=&#39;&quot;</span> &lt;&lt; mdarrays_it-&gt;getName() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00858"></a><span class="lineno">  858</span>&#160;          end = <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a name="l00859"></a><span class="lineno">  859</span>&#160;        }</div>
<div class="line"><a name="l00860"></a><span class="lineno">  860</span>&#160;</div>
<div class="line"><a name="l00861"></a><span class="lineno">  861</span>&#160;        query &lt;&lt; end;</div>
<div class="line"><a name="l00862"></a><span class="lineno">  862</span>&#160;</div>
<div class="line"><a name="l00863"></a><span class="lineno">  863</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00864"></a><span class="lineno">  864</span>&#160;        <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00865"></a><span class="lineno">  865</span>&#160;        {</div>
<div class="line"><a name="l00866"></a><span class="lineno">  866</span>&#160;          parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00867"></a><span class="lineno">  867</span>&#160;        }</div>
<div class="line"><a name="l00868"></a><span class="lineno">  868</span>&#160;</div>
<div class="line"><a name="l00869"></a><span class="lineno">  869</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_MetaInfoDescription&quot;</span>, parent_id, *mdarrays_it);</div>
<div class="line"><a name="l00870"></a><span class="lineno">  870</span>&#160;</div>
<div class="line"><a name="l00871"></a><span class="lineno">  871</span>&#160;        <span class="comment">// store meta data contained in the FloatDataArrays</span></div>
<div class="line"><a name="l00872"></a><span class="lineno">  872</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00873"></a><span class="lineno">  873</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM DATA_PeakMetaData WHERE fid_MetaInfoDescription=&quot;</span>;</div>
<div class="line"><a name="l00874"></a><span class="lineno">  874</span>&#160;        query &lt;&lt; parent_id;</div>
<div class="line"><a name="l00875"></a><span class="lineno">  875</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00876"></a><span class="lineno">  876</span>&#160;</div>
<div class="line"><a name="l00877"></a><span class="lineno">  877</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00878"></a><span class="lineno">  878</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM DATA_Peak WHERE fid_Spectrum=&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId();</div>
<div class="line"><a name="l00879"></a><span class="lineno">  879</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l00880"></a><span class="lineno">  880</span>&#160;</div>
<div class="line"><a name="l00881"></a><span class="lineno">  881</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00882"></a><span class="lineno">  882</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO DATA_PeakMetaData (fid_Peak,fid_MetaInfoDescription,Value) VALUES &quot;</span>;</div>
<div class="line"><a name="l00883"></a><span class="lineno">  883</span>&#160;        <span class="keywordflow">for</span> (<span class="keyword">typename</span> ExperimentType::SpectrumType::FloatDataArray::const_iterator meta_array_it = mdarrays_it-&gt;begin(); meta_array_it != mdarrays_it-&gt;end(); meta_array_it++)</div>
<div class="line"><a name="l00884"></a><span class="lineno">  884</span>&#160;        {</div>
<div class="line"><a name="l00885"></a><span class="lineno">  885</span>&#160;          <span class="keywordflow">if</span> (result.isValid())</div>
<div class="line"><a name="l00886"></a><span class="lineno">  886</span>&#160;          {</div>
<div class="line"><a name="l00887"></a><span class="lineno">  887</span>&#160;            query &lt;&lt; <span class="stringliteral">&quot;(&quot;</span> &lt;&lt; result.value(0).toInt() &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; *meta_array_it &lt;&lt; <span class="stringliteral">&quot;),&quot;</span>;</div>
<div class="line"><a name="l00888"></a><span class="lineno">  888</span>&#160;            result.next();</div>
<div class="line"><a name="l00889"></a><span class="lineno">  889</span>&#160;          }</div>
<div class="line"><a name="l00890"></a><span class="lineno">  890</span>&#160;          <span class="keywordflow">else</span></div>
<div class="line"><a name="l00891"></a><span class="lineno">  891</span>&#160;          {</div>
<div class="line"><a name="l00892"></a><span class="lineno">  892</span>&#160;            <span class="keywordflow">break</span>;</div>
<div class="line"><a name="l00893"></a><span class="lineno">  893</span>&#160;          }</div>
<div class="line"><a name="l00894"></a><span class="lineno">  894</span>&#160;        }</div>
<div class="line"><a name="l00895"></a><span class="lineno">  895</span>&#160;        <span class="comment">// remove last &quot;,&quot;</span></div>
<div class="line"><a name="l00896"></a><span class="lineno">  896</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(<a class="code" href="classOpenMS_1_1String.html">String</a>(query.str()).chop(1));</div>
<div class="line"><a name="l00897"></a><span class="lineno">  897</span>&#160;      }</div>
<div class="line"><a name="l00898"></a><span class="lineno">  898</span>&#160;</div>
<div class="line"><a name="l00899"></a><span class="lineno">  899</span>&#160;</div>
<div class="line"><a name="l00900"></a><span class="lineno">  900</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00901"></a><span class="lineno">  901</span>&#160;      <span class="comment">//------------------------------- store INSTRUMENT SETTINGS ------------------------------</span></div>
<div class="line"><a name="l00902"></a><span class="lineno">  902</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00903"></a><span class="lineno">  903</span>&#160;</div>
<div class="line"><a name="l00904"></a><span class="lineno">  904</span>&#160;      <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a> &amp; settings = exp_it-&gt;getInstrumentSettings();</div>
<div class="line"><a name="l00905"></a><span class="lineno">  905</span>&#160;</div>
<div class="line"><a name="l00906"></a><span class="lineno">  906</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00907"></a><span class="lineno">  907</span>&#160;</div>
<div class="line"><a name="l00908"></a><span class="lineno">  908</span>&#160;      <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00909"></a><span class="lineno">  909</span>&#160;      {</div>
<div class="line"><a name="l00910"></a><span class="lineno">  910</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_InstrumentSettings SET fid_Spectrum=&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;,&quot;</span>;</div>
<div class="line"><a name="l00911"></a><span class="lineno">  911</span>&#160;        end = <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a name="l00912"></a><span class="lineno">  912</span>&#160;      }</div>
<div class="line"><a name="l00913"></a><span class="lineno">  913</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00914"></a><span class="lineno">  914</span>&#160;      {</div>
<div class="line"><a name="l00915"></a><span class="lineno">  915</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM META_InstrumentSettings WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00916"></a><span class="lineno">  916</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l00917"></a><span class="lineno">  917</span>&#160;        parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l00918"></a><span class="lineno">  918</span>&#160;</div>
<div class="line"><a name="l00919"></a><span class="lineno">  919</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00920"></a><span class="lineno">  920</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;UPDATE META_InstrumentSettings SET &quot;</span>;</div>
<div class="line"><a name="l00921"></a><span class="lineno">  921</span>&#160;        end = <span class="stringliteral">&quot; WHERE fid_Spectrum=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00922"></a><span class="lineno">  922</span>&#160;      }</div>
<div class="line"><a name="l00923"></a><span class="lineno">  923</span>&#160;</div>
<div class="line"><a name="l00924"></a><span class="lineno">  924</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;Polarity=&quot;</span> &lt;&lt; (1u + settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a8f7be6e80ef1c4599af3aa096c7f7089">getPolarity</a>()) &lt;&lt; <span class="stringliteral">&quot;,&quot;</span>;</div>
<div class="line"><a name="l00925"></a><span class="lineno">  925</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;ScanMode=&quot;</span> &lt;&lt; (1u + settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a541856069e66db2a4cab95d7f1993dc9">getScanMode</a>()) &lt;&lt; <span class="stringliteral">&quot;,&quot;</span>;</div>
<div class="line"><a name="l00926"></a><span class="lineno">  926</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;ZoomScan=&quot;</span> &lt;&lt; (settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a3409c914db15bbb4696822e623a69ef1">getZoomScan</a>());</div>
<div class="line"><a name="l00927"></a><span class="lineno">  927</span>&#160;      query &lt;&lt; end;</div>
<div class="line"><a name="l00928"></a><span class="lineno">  928</span>&#160;</div>
<div class="line"><a name="l00929"></a><span class="lineno">  929</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00930"></a><span class="lineno">  930</span>&#160;</div>
<div class="line"><a name="l00931"></a><span class="lineno">  931</span>&#160;      <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00932"></a><span class="lineno">  932</span>&#160;        parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00933"></a><span class="lineno">  933</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_InstrumentSettings&quot;</span>, parent_id, exp_it-&gt;getInstrumentSettings());</div>
<div class="line"><a name="l00934"></a><span class="lineno">  934</span>&#160;</div>
<div class="line"><a name="l00935"></a><span class="lineno">  935</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00936"></a><span class="lineno">  936</span>&#160;      <span class="comment">//----------------------------------- store SCANWINDOWS---- ------------------------------</span></div>
<div class="line"><a name="l00937"></a><span class="lineno">  937</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00938"></a><span class="lineno">  938</span>&#160;</div>
<div class="line"><a name="l00939"></a><span class="lineno">  939</span>&#160;      <span class="comment">//handle several scan windows</span></div>
<div class="line"><a name="l00940"></a><span class="lineno">  940</span>&#160;      <span class="keyword">const</span> std::vector&lt;ScanWindow&gt; &amp; wins = settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a021f6acb8bd3a02278cc50f11c489a12">getScanWindows</a>();</div>
<div class="line"><a name="l00941"></a><span class="lineno">  941</span>&#160;</div>
<div class="line"><a name="l00942"></a><span class="lineno">  942</span>&#160;      <span class="comment">// first delete all old values, no matter whether we&#39;re updating or not</span></div>
<div class="line"><a name="l00943"></a><span class="lineno">  943</span>&#160;      <span class="comment">// do we have to delete the MetaInfo as well?</span></div>
<div class="line"><a name="l00944"></a><span class="lineno">  944</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00945"></a><span class="lineno">  945</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_ScanWindows WHERE fid_Spectrum=&#39;&quot;</span>;</div>
<div class="line"><a name="l00946"></a><span class="lineno">  946</span>&#160;      query &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00947"></a><span class="lineno">  947</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00948"></a><span class="lineno">  948</span>&#160;</div>
<div class="line"><a name="l00949"></a><span class="lineno">  949</span>&#160;      <span class="keywordflow">for</span> (<a class="code" href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">Size</a> wins_it = 0; wins_it &lt; wins.size(); wins_it++)</div>
<div class="line"><a name="l00950"></a><span class="lineno">  950</span>&#160;      {</div>
<div class="line"><a name="l00951"></a><span class="lineno">  951</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00952"></a><span class="lineno">  952</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_ScanWindows SET &quot;</span>;</div>
<div class="line"><a name="l00953"></a><span class="lineno">  953</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_Spectrum=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00954"></a><span class="lineno">  954</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,MZRangeBegin=&quot;</span> &lt;&lt; settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a021f6acb8bd3a02278cc50f11c489a12">getScanWindows</a>()[wins_it].begin;</div>
<div class="line"><a name="l00955"></a><span class="lineno">  955</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,MZRangeEnd=&quot;</span> &lt;&lt; settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a021f6acb8bd3a02278cc50f11c489a12">getScanWindows</a>()[wins_it].end;</div>
<div class="line"><a name="l00956"></a><span class="lineno">  956</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00957"></a><span class="lineno">  957</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_ScanWindows&quot;</span>, parent_id, settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a021f6acb8bd3a02278cc50f11c489a12">getScanWindows</a>()[wins_it]);</div>
<div class="line"><a name="l00958"></a><span class="lineno">  958</span>&#160;        <span class="comment">//~ parent_id = db_con_.getAutoId();</span></div>
<div class="line"><a name="l00959"></a><span class="lineno">  959</span>&#160;      }</div>
<div class="line"><a name="l00960"></a><span class="lineno">  960</span>&#160;</div>
<div class="line"><a name="l00961"></a><span class="lineno">  961</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00962"></a><span class="lineno">  962</span>&#160;      <span class="comment">//------------------------------- store ACQUISITIONINFO ----------------------------------</span></div>
<div class="line"><a name="l00963"></a><span class="lineno">  963</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00964"></a><span class="lineno">  964</span>&#160;</div>
<div class="line"><a name="l00965"></a><span class="lineno">  965</span>&#160;      <span class="keyword">const</span> <a class="code" href="classOpenMS_1_1AcquisitionInfo.html">AcquisitionInfo</a> &amp; info = exp_it-&gt;getAcquisitionInfo();</div>
<div class="line"><a name="l00966"></a><span class="lineno">  966</span>&#160;</div>
<div class="line"><a name="l00967"></a><span class="lineno">  967</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00968"></a><span class="lineno">  968</span>&#160;</div>
<div class="line"><a name="l00969"></a><span class="lineno">  969</span>&#160;      <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00970"></a><span class="lineno">  970</span>&#160;      {</div>
<div class="line"><a name="l00971"></a><span class="lineno">  971</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_AcquisitionInfo SET fid_Spectrum=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;,&quot;</span>;</div>
<div class="line"><a name="l00972"></a><span class="lineno">  972</span>&#160;        end = <span class="stringliteral">&quot;&quot;</span>;</div>
<div class="line"><a name="l00973"></a><span class="lineno">  973</span>&#160;      }</div>
<div class="line"><a name="l00974"></a><span class="lineno">  974</span>&#160;      <span class="keywordflow">else</span></div>
<div class="line"><a name="l00975"></a><span class="lineno">  975</span>&#160;      {</div>
<div class="line"><a name="l00976"></a><span class="lineno">  976</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM META_AcquisitionInfo WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00977"></a><span class="lineno">  977</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l00978"></a><span class="lineno">  978</span>&#160;        acquisition_info_id = result.value(0).toInt();</div>
<div class="line"><a name="l00979"></a><span class="lineno">  979</span>&#160;</div>
<div class="line"><a name="l00980"></a><span class="lineno">  980</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00981"></a><span class="lineno">  981</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;UPDATE META_AcquisitionInfo SET &quot;</span>;</div>
<div class="line"><a name="l00982"></a><span class="lineno">  982</span>&#160;        end = <span class="stringliteral">&quot; WHERE fid_Spectrum=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()) + <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00983"></a><span class="lineno">  983</span>&#160;      }</div>
<div class="line"><a name="l00984"></a><span class="lineno">  984</span>&#160;</div>
<div class="line"><a name="l00985"></a><span class="lineno">  985</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;MethodOfCombination=&#39;&quot;</span> &lt;&lt; info.<a class="code" href="classOpenMS_1_1AcquisitionInfo.html#a883a8e420b509ac1c9a4b08f4494915d">getMethodOfCombination</a>() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l00986"></a><span class="lineno">  986</span>&#160;      query &lt;&lt; end;</div>
<div class="line"><a name="l00987"></a><span class="lineno">  987</span>&#160;</div>
<div class="line"><a name="l00988"></a><span class="lineno">  988</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l00989"></a><span class="lineno">  989</span>&#160;      <span class="keywordflow">if</span> (new_entry)</div>
<div class="line"><a name="l00990"></a><span class="lineno">  990</span>&#160;      {</div>
<div class="line"><a name="l00991"></a><span class="lineno">  991</span>&#160;        acquisition_info_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l00992"></a><span class="lineno">  992</span>&#160;      }</div>
<div class="line"><a name="l00993"></a><span class="lineno">  993</span>&#160;</div>
<div class="line"><a name="l00994"></a><span class="lineno">  994</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00995"></a><span class="lineno">  995</span>&#160;      <span class="comment">//-----------------------------------store ACQUISITION -----------------------------------</span></div>
<div class="line"><a name="l00996"></a><span class="lineno">  996</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00997"></a><span class="lineno">  997</span>&#160;</div>
<div class="line"><a name="l00998"></a><span class="lineno">  998</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l00999"></a><span class="lineno">  999</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_Acquisition&quot;</span>, <span class="stringliteral">&quot;fid_AcquisitionInfo=&#39;&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(parent_id) + <span class="stringliteral">&quot;&#39;&quot;</span>);</div>
<div class="line"><a name="l01000"></a><span class="lineno"> 1000</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_Acquisition WHERE fid_AcquisitionInfo=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01001"></a><span class="lineno"> 1001</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01002"></a><span class="lineno"> 1002</span>&#160;</div>
<div class="line"><a name="l01003"></a><span class="lineno"> 1003</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;Acquisition&gt;::const_iterator info_it = info.begin(); info_it != info.end(); info_it++)</div>
<div class="line"><a name="l01004"></a><span class="lineno"> 1004</span>&#160;      {</div>
<div class="line"><a name="l01005"></a><span class="lineno"> 1005</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01006"></a><span class="lineno"> 1006</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_Acquisition SET fid_AcquisitionInfo=&#39;&quot;</span> &lt;&lt; acquisition_info_id &lt;&lt; <span class="stringliteral">&quot;&#39;,&quot;</span>;</div>
<div class="line"><a name="l01007"></a><span class="lineno"> 1007</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;Number=&#39;&quot;</span> &lt;&lt; info_it-&gt;getIdentifier() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01008"></a><span class="lineno"> 1008</span>&#160;</div>
<div class="line"><a name="l01009"></a><span class="lineno"> 1009</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01010"></a><span class="lineno"> 1010</span>&#160;        parent_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l01011"></a><span class="lineno"> 1011</span>&#160;</div>
<div class="line"><a name="l01012"></a><span class="lineno"> 1012</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_Acquisition&quot;</span>, parent_id, *info_it);</div>
<div class="line"><a name="l01013"></a><span class="lineno"> 1013</span>&#160;      }</div>
<div class="line"><a name="l01014"></a><span class="lineno"> 1014</span>&#160;</div>
<div class="line"><a name="l01015"></a><span class="lineno"> 1015</span>&#160;</div>
<div class="line"><a name="l01016"></a><span class="lineno"> 1016</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01017"></a><span class="lineno"> 1017</span>&#160;      <span class="comment">//-------------------------------------store DATAPROCESSING ----------------------------------</span></div>
<div class="line"><a name="l01018"></a><span class="lineno"> 1018</span>&#160;      <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01019"></a><span class="lineno"> 1019</span>&#160;      <span class="keyword">const</span> std::vector&lt;DataProcessing&gt; &amp; processings = exp_it-&gt;getDataProcessing();</div>
<div class="line"><a name="l01020"></a><span class="lineno"> 1020</span>&#160;</div>
<div class="line"><a name="l01021"></a><span class="lineno"> 1021</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_DataProcessing&quot;</span>, <span class="stringliteral">&quot;fid_Spectrum=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(exp_it-&gt;getPersistenceId()));</div>
<div class="line"><a name="l01022"></a><span class="lineno"> 1022</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01023"></a><span class="lineno"> 1023</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_DataProcessing WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01024"></a><span class="lineno"> 1024</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01025"></a><span class="lineno"> 1025</span>&#160;</div>
<div class="line"><a name="l01026"></a><span class="lineno"> 1026</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;DataProcessing&gt;::const_iterator processings_it = processings.begin(); processings_it != processings.end(); processings_it++)</div>
<div class="line"><a name="l01027"></a><span class="lineno"> 1027</span>&#160;      {</div>
<div class="line"><a name="l01028"></a><span class="lineno"> 1028</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01029"></a><span class="lineno"> 1029</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_DataProcessing SET &quot;</span>;</div>
<div class="line"><a name="l01030"></a><span class="lineno"> 1030</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_Spectrum=&#39;&quot;</span> &lt;&lt; exp_it-&gt;getPersistenceId() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01031"></a><span class="lineno"> 1031</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,CompletionTime=&#39;&quot;</span> &lt;&lt; processings_it-&gt;getCompletionTime().get() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01032"></a><span class="lineno"> 1032</span>&#160;</div>
<div class="line"><a name="l01033"></a><span class="lineno"> 1033</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01034"></a><span class="lineno"> 1034</span>&#160;</div>
<div class="line"><a name="l01035"></a><span class="lineno"> 1035</span>&#160;        <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> dataprocessing_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l01036"></a><span class="lineno"> 1036</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_DataProcessing&quot;</span>, dataprocessing_id, *processings_it);</div>
<div class="line"><a name="l01037"></a><span class="lineno"> 1037</span>&#160;</div>
<div class="line"><a name="l01038"></a><span class="lineno"> 1038</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">deleteMetaInfo_</a>(<span class="stringliteral">&quot;META_Software&quot;</span>, <span class="stringliteral">&quot;SoftwareApplicator=&#39;META_DataProcessing&#39; AND fid_SoftwareApplicator=&quot;</span> + <a class="code" href="classOpenMS_1_1String.html">String</a>(dataprocessing_id));</div>
<div class="line"><a name="l01039"></a><span class="lineno"> 1039</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01040"></a><span class="lineno"> 1040</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;DELETE FROM META_Software WHERE fid_SoftwareApplicator=&#39;&quot;</span> &lt;&lt; dataprocessing_id &lt;&lt; <span class="stringliteral">&quot;&#39; AND SoftwareApplicator=&#39;META_DataProcessing&#39;&quot;</span>;</div>
<div class="line"><a name="l01041"></a><span class="lineno"> 1041</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01042"></a><span class="lineno"> 1042</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01043"></a><span class="lineno"> 1043</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_Software SET &quot;</span>;</div>
<div class="line"><a name="l01044"></a><span class="lineno"> 1044</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;fid_SoftwareApplicator=&#39;&quot;</span> &lt;&lt; dataprocessing_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01045"></a><span class="lineno"> 1045</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,SoftwareApplicator=&#39;META_DataProcessing&#39;&quot;</span>;</div>
<div class="line"><a name="l01046"></a><span class="lineno"> 1046</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Name=&#39;&quot;</span> &lt;&lt; processings_it-&gt;getSoftware().getName() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01047"></a><span class="lineno"> 1047</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;,Version=&#39;&quot;</span> &lt;&lt; processings_it-&gt;getSoftware().getVersion() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01048"></a><span class="lineno"> 1048</span>&#160;        result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01049"></a><span class="lineno"> 1049</span>&#160;</div>
<div class="line"><a name="l01050"></a><span class="lineno"> 1050</span>&#160;        <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> software_id = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">getAutoId</a>();</div>
<div class="line"><a name="l01051"></a><span class="lineno"> 1051</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">storeMetaInfo_</a>(<span class="stringliteral">&quot;META_Software&quot;</span>, software_id, processings_it-&gt;getSoftware());</div>
<div class="line"><a name="l01052"></a><span class="lineno"> 1052</span>&#160;</div>
<div class="line"><a name="l01053"></a><span class="lineno"> 1053</span>&#160;        <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01054"></a><span class="lineno"> 1054</span>&#160;        <span class="comment">//------------------------------------ store PROCESSINGACTIONS ---------------------------</span></div>
<div class="line"><a name="l01055"></a><span class="lineno"> 1055</span>&#160;        <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01056"></a><span class="lineno"> 1056</span>&#160;        <span class="keywordflow">for</span> (std::set&lt;DataProcessing::ProcessingAction&gt;::const_iterator acts_it = processings_it-&gt;getProcessingActions().begin(); acts_it != processings_it-&gt;getProcessingActions().end(); acts_it++)</div>
<div class="line"><a name="l01057"></a><span class="lineno"> 1057</span>&#160;        {</div>
<div class="line"><a name="l01058"></a><span class="lineno"> 1058</span>&#160;          query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01059"></a><span class="lineno"> 1059</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;INSERT INTO META_ProcessingActions SET &quot;</span>;</div>
<div class="line"><a name="l01060"></a><span class="lineno"> 1060</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;ProcessingActionType=&#39;&quot;</span> &lt;&lt; (1u + (*acts_it)) &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01061"></a><span class="lineno"> 1061</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot;,fid_DataProcessing=&#39;&quot;</span> &lt;&lt; dataprocessing_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01062"></a><span class="lineno"> 1062</span>&#160;          result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01063"></a><span class="lineno"> 1063</span>&#160;        }</div>
<div class="line"><a name="l01064"></a><span class="lineno"> 1064</span>&#160;      }</div>
<div class="line"><a name="l01065"></a><span class="lineno"> 1065</span>&#160;</div>
<div class="line"><a name="l01066"></a><span class="lineno"> 1066</span>&#160;    }    <span class="comment">//iteration over experiments&#39; spectra ends here</span></div>
<div class="line"><a name="l01067"></a><span class="lineno"> 1067</span>&#160;  }</div>
<div class="line"><a name="l01068"></a><span class="lineno"> 1068</span>&#160;</div>
<div class="line"><a name="l01069"></a><span class="lineno"> 1069</span>&#160;  <span class="keyword">template</span> &lt;<span class="keyword">class</span> ExperimentType&gt;</div>
<div class="line"><a name="l01070"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8"> 1070</a></span>&#160;  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">DBAdapter::loadExperiment</a>(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, ExperimentType &amp; exp)</div>
<div class="line"><a name="l01071"></a><span class="lineno"> 1071</span>&#160;  {</div>
<div class="line"><a name="l01072"></a><span class="lineno"> 1072</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01073"></a><span class="lineno"> 1073</span>&#160;    <span class="comment">//------------------------------- CHECK DB VERSION ---------------------------------------</span></div>
<div class="line"><a name="l01074"></a><span class="lineno"> 1074</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01075"></a><span class="lineno"> 1075</span>&#160;    <span class="keywordflow">if</span> (!<a class="code" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">checkDBVersion</a>(<span class="keyword">true</span>))</div>
<div class="line"><a name="l01076"></a><span class="lineno"> 1076</span>&#160;      <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l01077"></a><span class="lineno"> 1077</span>&#160;</div>
<div class="line"><a name="l01078"></a><span class="lineno"> 1078</span>&#160;    std::stringstream query;     <span class="comment">// query to build</span></div>
<div class="line"><a name="l01079"></a><span class="lineno"> 1079</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> tmp;                  <span class="comment">// temporary data</span></div>
<div class="line"><a name="l01080"></a><span class="lineno"> 1080</span>&#160;    QSqlQuery result, sub_result;            <span class="comment">// place to store the query results in</span></div>
<div class="line"><a name="l01081"></a><span class="lineno"> 1081</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id;                       <span class="comment">// holds ID of parent data set</span></div>
<div class="line"><a name="l01082"></a><span class="lineno"> 1082</span>&#160;</div>
<div class="line"><a name="l01083"></a><span class="lineno"> 1083</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01084"></a><span class="lineno"> 1084</span>&#160;    <span class="comment">//------------------------------- load EXPERIMENTs ---------------------------------------</span></div>
<div class="line"><a name="l01085"></a><span class="lineno"> 1085</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01086"></a><span class="lineno"> 1086</span>&#160;</div>
<div class="line"><a name="l01087"></a><span class="lineno"> 1087</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Date,fid_MetaInfo,Description,FractionIdentifier FROM META_MSExperiment WHERE id=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01088"></a><span class="lineno"> 1088</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01089"></a><span class="lineno"> 1089</span>&#160;</div>
<div class="line"><a name="l01090"></a><span class="lineno"> 1090</span>&#160;    <span class="comment">//Experiment meta info</span></div>
<div class="line"><a name="l01091"></a><span class="lineno"> 1091</span>&#160;    <span class="keywordflow">try</span></div>
<div class="line"><a name="l01092"></a><span class="lineno"> 1092</span>&#160;    {</div>
<div class="line"><a name="l01093"></a><span class="lineno"> 1093</span>&#160;      <a class="code" href="classOpenMS_1_1DateTime.html">DateTime</a> d;</div>
<div class="line"><a name="l01094"></a><span class="lineno"> 1094</span>&#160;      d.<a class="code" href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">set</a>(result.value(0).toDateTime().toString(Qt::ISODate));</div>
<div class="line"><a name="l01095"></a><span class="lineno"> 1095</span>&#160;      exp.setDateTime(d);</div>
<div class="line"><a name="l01096"></a><span class="lineno"> 1096</span>&#160;    }</div>
<div class="line"><a name="l01097"></a><span class="lineno"> 1097</span>&#160;    <span class="keywordflow">catch</span> (<a class="code" href="classOpenMS_1_1Exception_1_1ParseError.html">Exception::ParseError</a> &amp;)</div>
<div class="line"><a name="l01098"></a><span class="lineno"> 1098</span>&#160;    {</div>
<div class="line"><a name="l01099"></a><span class="lineno"> 1099</span>&#160;      <span class="comment">//no nothing, the date is simply unset</span></div>
<div class="line"><a name="l01100"></a><span class="lineno"> 1100</span>&#160;    }</div>
<div class="line"><a name="l01101"></a><span class="lineno"> 1101</span>&#160;    exp.setComment(result.value(2).toString());</div>
<div class="line"><a name="l01102"></a><span class="lineno"> 1102</span>&#160;    exp.setFractionIdentifier(result.value(3).toString());</div>
<div class="line"><a name="l01103"></a><span class="lineno"> 1103</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(1).toInt(), exp);</div>
<div class="line"><a name="l01104"></a><span class="lineno"> 1104</span>&#160;</div>
<div class="line"><a name="l01105"></a><span class="lineno"> 1105</span>&#160;    std::vector&lt;ProteinIdentification&gt; pi_vec;</div>
<div class="line"><a name="l01106"></a><span class="lineno"> 1106</span>&#160;    std::vector&lt;ProteinHit&gt; ph_vec;</div>
<div class="line"><a name="l01107"></a><span class="lineno"> 1107</span>&#160;    <a class="code" href="classOpenMS_1_1ProteinIdentification.html">ProteinIdentification</a> pi;</div>
<div class="line"><a name="l01108"></a><span class="lineno"> 1108</span>&#160;    <a class="code" href="classOpenMS_1_1ProteinHit.html">ProteinHit</a> ph;</div>
<div class="line"><a name="l01109"></a><span class="lineno"> 1109</span>&#160;</div>
<div class="line"><a name="l01110"></a><span class="lineno"> 1110</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01111"></a><span class="lineno"> 1111</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT id, SearchEngine, SearchEngineVersion, Date, ScoreType, HigherScoreBetter, SignificanceThreshold, fid_MetaInfo, fid_File FROM ID_ProteinIdentification WHERE fid_MSExperiment=&#39;&quot;</span>&lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01112"></a><span class="lineno"> 1112</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01113"></a><span class="lineno"> 1113</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01114"></a><span class="lineno"> 1114</span>&#160;    {</div>
<div class="line"><a name="l01115"></a><span class="lineno"> 1115</span>&#160;      parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l01116"></a><span class="lineno"> 1116</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#a15a14866884b8b4dea8950b2151a0963">setSearchEngine</a>(result.value(1).toString());</div>
<div class="line"><a name="l01117"></a><span class="lineno"> 1117</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#a82e595befae76c1f7c22918420d2d9e8">setSearchEngineVersion</a>(result.value(2).toString());</div>
<div class="line"><a name="l01118"></a><span class="lineno"> 1118</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#ae0728c54c04bcc99a4c6ebfa961ed2c5">setDateTime</a>(<a class="code" href="classOpenMS_1_1DateTime.html">DateTime</a>(result.value(3).toDateTime()));</div>
<div class="line"><a name="l01119"></a><span class="lineno"> 1119</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">setScoreType</a>(result.value(4).toString());</div>
<div class="line"><a name="l01120"></a><span class="lineno"> 1120</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#a2b12b0259c1b9a843a11013ea4097899">setHigherScoreBetter</a>(result.value(5).toInt());</div>
<div class="line"><a name="l01121"></a><span class="lineno"> 1121</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">setSignificanceThreshold</a>(result.value(6).toDouble());</div>
<div class="line"><a name="l01122"></a><span class="lineno"> 1122</span>&#160;</div>
<div class="line"><a name="l01123"></a><span class="lineno"> 1123</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(7).toInt(), pi);</div>
<div class="line"><a name="l01124"></a><span class="lineno"> 1124</span>&#160;      <span class="comment">//needs getter and setter methods first</span></div>
<div class="line"><a name="l01125"></a><span class="lineno"> 1125</span>&#160;      <span class="comment">//loadFile_(result.value(8).toInt(), pi.getSourceFile());</span></div>
<div class="line"><a name="l01126"></a><span class="lineno"> 1126</span>&#160;</div>
<div class="line"><a name="l01127"></a><span class="lineno"> 1127</span>&#160;      <span class="comment">//load searchparameters</span></div>
<div class="line"><a name="l01128"></a><span class="lineno"> 1128</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01129"></a><span class="lineno"> 1129</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT id,DB,DBVersion,Taxonomy,Charges,MassType-1,Enzyme-1,MissedCleavages,PeakMassTolerance,PrecursorTolerance,fid_MetaInfo FROM ID_SearchParameters WHERE fid_ProteinIdentification=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01130"></a><span class="lineno"> 1130</span>&#160;      sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01131"></a><span class="lineno"> 1131</span>&#160;</div>
<div class="line"><a name="l01132"></a><span class="lineno"> 1132</span>&#160;      <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> sub_id = sub_result.value(0).toInt();</div>
<div class="line"><a name="l01133"></a><span class="lineno"> 1133</span>&#160;      <a class="code" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html">ProteinIdentification::SearchParameters</a> params(pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#af7e8f29d109ed9627598d2f8a6bb28a9">getSearchParameters</a>());</div>
<div class="line"><a name="l01134"></a><span class="lineno"> 1134</span>&#160;      params.<a class="code" href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html#ae525bb5a71aa3ae9d811588db4652c00">db</a> = sub_result.value(1).toString();</div>
<div class="line"><a name="l01135"></a><span class="lineno"> 1135</span>&#160;      params.db_version = sub_result.value(2).toString();</div>
<div class="line"><a name="l01136"></a><span class="lineno"> 1136</span>&#160;      params.taxonomy = sub_result.value(3).toString();</div>
<div class="line"><a name="l01137"></a><span class="lineno"> 1137</span>&#160;      params.charges = sub_result.value(4).toString();</div>
<div class="line"><a name="l01138"></a><span class="lineno"> 1138</span>&#160;      params.mass_type = ((<a class="code" href="classOpenMS_1_1ProteinIdentification.html#a5431b65220b7ad71b5e8768876ee3e53">ProteinIdentification::PeakMassType</a>)sub_result.value(5).toInt());</div>
<div class="line"><a name="l01139"></a><span class="lineno"> 1139</span>&#160;      params.enzyme = ((<a class="code" href="classOpenMS_1_1ProteinIdentification.html#ac1976fd756a09ae4e26fe6b32fcb396c">ProteinIdentification::DigestionEnzyme</a>)sub_result.value(6).toInt());</div>
<div class="line"><a name="l01140"></a><span class="lineno"> 1140</span>&#160;      params.missed_cleavages = sub_result.value(7).<a class="code" href="classOpenMS_1_1String.html#a28f849a39a6e1a02a891d9e7e7f6eb79">toInt</a>();</div>
<div class="line"><a name="l01141"></a><span class="lineno"> 1141</span>&#160;      params.peak_mass_tolerance = sub_result.value(8).toDouble();</div>
<div class="line"><a name="l01142"></a><span class="lineno"> 1142</span>&#160;      params.precursor_tolerance = sub_result.value(9).toDouble();</div>
<div class="line"><a name="l01143"></a><span class="lineno"> 1143</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(sub_result.value(10).toInt(), params);</div>
<div class="line"><a name="l01144"></a><span class="lineno"> 1144</span>&#160;</div>
<div class="line"><a name="l01145"></a><span class="lineno"> 1145</span>&#160;      <span class="comment">//fill modifications</span></div>
<div class="line"><a name="l01146"></a><span class="lineno"> 1146</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01147"></a><span class="lineno"> 1147</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT name FROM ID_VariableModifications WHERE fid_SearchParameters=&#39;&quot;</span> &lt;&lt; sub_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01148"></a><span class="lineno"> 1148</span>&#160;      sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01149"></a><span class="lineno"> 1149</span>&#160;      <span class="keywordflow">while</span> (sub_result.next())</div>
<div class="line"><a name="l01150"></a><span class="lineno"> 1150</span>&#160;      {</div>
<div class="line"><a name="l01151"></a><span class="lineno"> 1151</span>&#160;        params.variable_modifications.push_back(sub_result.value(0).toString());</div>
<div class="line"><a name="l01152"></a><span class="lineno"> 1152</span>&#160;      }</div>
<div class="line"><a name="l01153"></a><span class="lineno"> 1153</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01154"></a><span class="lineno"> 1154</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT name FROM ID_FixedModifications WHERE fid_SearchParameters=&#39;&quot;</span> &lt;&lt; sub_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01155"></a><span class="lineno"> 1155</span>&#160;      sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01156"></a><span class="lineno"> 1156</span>&#160;      <span class="keywordflow">while</span> (sub_result.next())</div>
<div class="line"><a name="l01157"></a><span class="lineno"> 1157</span>&#160;      {</div>
<div class="line"><a name="l01158"></a><span class="lineno"> 1158</span>&#160;        params.fixed_modifications.push_back(sub_result.value(0).toString());</div>
<div class="line"><a name="l01159"></a><span class="lineno"> 1159</span>&#160;      }</div>
<div class="line"><a name="l01160"></a><span class="lineno"> 1160</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#afb0f58ddeea0e6f58da132fae1421563">setSearchParameters</a>(params);</div>
<div class="line"><a name="l01161"></a><span class="lineno"> 1161</span>&#160;</div>
<div class="line"><a name="l01162"></a><span class="lineno"> 1162</span>&#160;</div>
<div class="line"><a name="l01163"></a><span class="lineno"> 1163</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01164"></a><span class="lineno"> 1164</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT Score, Accession, Sequence, Rank, fid_MetaInfo FROM ID_ProteinHit WHERE fid_ProteinIdentification=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01165"></a><span class="lineno"> 1165</span>&#160;      sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01166"></a><span class="lineno"> 1166</span>&#160;      <span class="keywordflow">while</span> (sub_result.next())</div>
<div class="line"><a name="l01167"></a><span class="lineno"> 1167</span>&#160;      {</div>
<div class="line"><a name="l01168"></a><span class="lineno"> 1168</span>&#160;        ph.<a class="code" href="classOpenMS_1_1ProteinHit.html#ae81d824b06eb6152f84276cdec74ce8b">setScore</a>(sub_result.value(0).toDouble());</div>
<div class="line"><a name="l01169"></a><span class="lineno"> 1169</span>&#160;        ph.<a class="code" href="classOpenMS_1_1ProteinHit.html#aba1fff7a176ff80d53f932769e606980">setAccession</a>(sub_result.value(1).toString());</div>
<div class="line"><a name="l01170"></a><span class="lineno"> 1170</span>&#160;        ph.<a class="code" href="classOpenMS_1_1ProteinHit.html#a2b8bf5f3febdb76461bdea9ff39d6b6d">setSequence</a>(sub_result.value(2).toString());</div>
<div class="line"><a name="l01171"></a><span class="lineno"> 1171</span>&#160;        ph.<a class="code" href="classOpenMS_1_1ProteinHit.html#a7daed733ac80f8002f3a1fbdc97c21e1">setRank</a>(sub_result.value(3).toInt());</div>
<div class="line"><a name="l01172"></a><span class="lineno"> 1172</span>&#160;</div>
<div class="line"><a name="l01173"></a><span class="lineno"> 1173</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(sub_result.value(4).toInt(), ph);</div>
<div class="line"><a name="l01174"></a><span class="lineno"> 1174</span>&#160;</div>
<div class="line"><a name="l01175"></a><span class="lineno"> 1175</span>&#160;        ph_vec.push_back(ph);</div>
<div class="line"><a name="l01176"></a><span class="lineno"> 1176</span>&#160;      }</div>
<div class="line"><a name="l01177"></a><span class="lineno"> 1177</span>&#160;</div>
<div class="line"><a name="l01178"></a><span class="lineno"> 1178</span>&#160;      pi.<a class="code" href="classOpenMS_1_1ProteinIdentification.html#a86f5c6d7c17c3aa94ec734e2a4fb50fa">setHits</a>(ph_vec);</div>
<div class="line"><a name="l01179"></a><span class="lineno"> 1179</span>&#160;</div>
<div class="line"><a name="l01180"></a><span class="lineno"> 1180</span>&#160;      pi_vec.push_back(pi);</div>
<div class="line"><a name="l01181"></a><span class="lineno"> 1181</span>&#160;    }</div>
<div class="line"><a name="l01182"></a><span class="lineno"> 1182</span>&#160;</div>
<div class="line"><a name="l01183"></a><span class="lineno"> 1183</span>&#160;    exp.setProteinIdentifications(pi_vec);</div>
<div class="line"><a name="l01184"></a><span class="lineno"> 1184</span>&#160;</div>
<div class="line"><a name="l01185"></a><span class="lineno"> 1185</span>&#160;    <span class="comment">// Sample</span></div>
<div class="line"><a name="l01186"></a><span class="lineno"> 1186</span>&#160;    <a class="code" href="classOpenMS_1_1Sample.html">Sample</a> sample;</div>
<div class="line"><a name="l01187"></a><span class="lineno"> 1187</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01188"></a><span class="lineno"> 1188</span>&#160;    <span class="comment">// finding root of recursive sample tree</span></div>
<div class="line"><a name="l01189"></a><span class="lineno"> 1189</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM META_Sample WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39; AND fid_Sample IS NULL&quot;</span>;</div>
<div class="line"><a name="l01190"></a><span class="lineno"> 1190</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01191"></a><span class="lineno"> 1191</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#ad5864c079da5a9743ed735d7457263f9">loadSample_</a>(result.value(0).toInt(), sample);</div>
<div class="line"><a name="l01192"></a><span class="lineno"> 1192</span>&#160;    exp.setSample(sample);</div>
<div class="line"><a name="l01193"></a><span class="lineno"> 1193</span>&#160;</div>
<div class="line"><a name="l01194"></a><span class="lineno"> 1194</span>&#160;    <span class="comment">// ContactPerson</span></div>
<div class="line"><a name="l01195"></a><span class="lineno"> 1195</span>&#160;    <a class="code" href="classOpenMS_1_1ContactPerson.html">ContactPerson</a> contact;</div>
<div class="line"><a name="l01196"></a><span class="lineno"> 1196</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01197"></a><span class="lineno"> 1197</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT PreName,LastName,Affiliation,Email,Comment,fid_MetaInfo FROM META_ContactPerson WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01198"></a><span class="lineno"> 1198</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01199"></a><span class="lineno"> 1199</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01200"></a><span class="lineno"> 1200</span>&#160;    {</div>
<div class="line"><a name="l01201"></a><span class="lineno"> 1201</span>&#160;      contact.<a class="code" href="classOpenMS_1_1ContactPerson.html#a391c58adf84a5096f9fa9161fb985902">setFirstName</a>(result.value(0).toString());</div>
<div class="line"><a name="l01202"></a><span class="lineno"> 1202</span>&#160;      contact.<a class="code" href="classOpenMS_1_1ContactPerson.html#ae5056c1e33cb9bbea429b446ef0d41a6">setLastName</a>(result.value(1).toString());</div>
<div class="line"><a name="l01203"></a><span class="lineno"> 1203</span>&#160;      contact.<a class="code" href="classOpenMS_1_1ContactPerson.html#ab884bb42e1849ac6bad45ae0cf1bb3a5">setInstitution</a>(result.value(2).toString());</div>
<div class="line"><a name="l01204"></a><span class="lineno"> 1204</span>&#160;      contact.<a class="code" href="classOpenMS_1_1ContactPerson.html#a74399439996aca9fc1c551081a556294">setEmail</a>(result.value(3).toString());</div>
<div class="line"><a name="l01205"></a><span class="lineno"> 1205</span>&#160;      contact.<a class="code" href="classOpenMS_1_1ContactPerson.html#ad7d93df87f74de90e5d0870ebddfd6b5">setContactInfo</a>(result.value(4).toString());</div>
<div class="line"><a name="l01206"></a><span class="lineno"> 1206</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(5).toInt(), contact);</div>
<div class="line"><a name="l01207"></a><span class="lineno"> 1207</span>&#160;      exp.getContacts().push_back(contact);</div>
<div class="line"><a name="l01208"></a><span class="lineno"> 1208</span>&#160;    }</div>
<div class="line"><a name="l01209"></a><span class="lineno"> 1209</span>&#160;</div>
<div class="line"><a name="l01210"></a><span class="lineno"> 1210</span>&#160;    <span class="comment">// HPLC</span></div>
<div class="line"><a name="l01211"></a><span class="lineno"> 1211</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01212"></a><span class="lineno"> 1212</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT id,InstrumentName,ColumnName,Description,Flux,Pressure,Temperature FROM META_HPLC WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01213"></a><span class="lineno"> 1213</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01214"></a><span class="lineno"> 1214</span>&#160;    parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l01215"></a><span class="lineno"> 1215</span>&#160;    exp.getHPLC().setInstrument(result.value(1).toString());</div>
<div class="line"><a name="l01216"></a><span class="lineno"> 1216</span>&#160;    exp.getHPLC().setColumn(result.value(2).toString());</div>
<div class="line"><a name="l01217"></a><span class="lineno"> 1217</span>&#160;    exp.getHPLC().setComment(result.value(3).toString());</div>
<div class="line"><a name="l01218"></a><span class="lineno"> 1218</span>&#160;    exp.getHPLC().setFlux(result.value(4).toInt());</div>
<div class="line"><a name="l01219"></a><span class="lineno"> 1219</span>&#160;    exp.getHPLC().setPressure(result.value(5).toInt());</div>
<div class="line"><a name="l01220"></a><span class="lineno"> 1220</span>&#160;    exp.getHPLC().setTemperature(result.value(6).toInt());</div>
<div class="line"><a name="l01221"></a><span class="lineno"> 1221</span>&#160;</div>
<div class="line"><a name="l01222"></a><span class="lineno"> 1222</span>&#160;    <span class="comment">// Gradient*</span></div>
<div class="line"><a name="l01223"></a><span class="lineno"> 1223</span>&#160;    <span class="comment">// I tried taking the big query apart in order to skip the double join, but this leads to</span></div>
<div class="line"><a name="l01224"></a><span class="lineno"> 1224</span>&#160;    <span class="comment">// the problem of saving all requested keys in a vector in order to request the percentages (complex).</span></div>
<div class="line"><a name="l01225"></a><span class="lineno"> 1225</span>&#160;    <span class="comment">// I&#39;ll still preserve the code in order to optimize in the future. Maybe I was just being blind. ;-)</span></div>
<div class="line"><a name="l01226"></a><span class="lineno"> 1226</span>&#160;</div>
<div class="line"><a name="l01227"></a><span class="lineno"> 1227</span>&#160;    <a class="code" href="classOpenMS_1_1String.html">String</a> last_name;</div>
<div class="line"><a name="l01228"></a><span class="lineno"> 1228</span>&#160;    <span class="keywordtype">bool</span> timepoints_done = <span class="keyword">false</span>;</div>
<div class="line"><a name="l01229"></a><span class="lineno"> 1229</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01230"></a><span class="lineno"> 1230</span>&#160;    <span class="comment">/*</span></div>
<div class="line"><a name="l01231"></a><span class="lineno"> 1231</span>&#160;<span class="comment">    query &lt;&lt; &quot;SELECT id,Name FROM META_GradientEluent WHERE fid_HPLC=&quot; &lt;&lt; parent_id;</span></div>
<div class="line"><a name="l01232"></a><span class="lineno"> 1232</span>&#160;<span class="comment">    result = db_con_.executeQuery(query.str());</span></div>
<div class="line"><a name="l01233"></a><span class="lineno"> 1233</span>&#160;<span class="comment">    while(result.next())</span></div>
<div class="line"><a name="l01234"></a><span class="lineno"> 1234</span>&#160;<span class="comment">    {</span></div>
<div class="line"><a name="l01235"></a><span class="lineno"> 1235</span>&#160;<span class="comment">        exp.getHPLC().getGradient().addEluent(result.value(0).toString());</span></div>
<div class="line"><a name="l01236"></a><span class="lineno"> 1236</span>&#160;<span class="comment">    }</span></div>
<div class="line"><a name="l01237"></a><span class="lineno"> 1237</span>&#160;<span class="comment"></span></div>
<div class="line"><a name="l01238"></a><span class="lineno"> 1238</span>&#160;<span class="comment">    query.str(&quot;&quot;);</span></div>
<div class="line"><a name="l01239"></a><span class="lineno"> 1239</span>&#160;<span class="comment">    query &lt;&lt; &quot;SELECT id,Time FROM META_GradientTime WHERE fid_HPLC=&quot; &lt;&lt; parent_id;</span></div>
<div class="line"><a name="l01240"></a><span class="lineno"> 1240</span>&#160;<span class="comment">    result = db_con_.executeQuery(query.str());</span></div>
<div class="line"><a name="l01241"></a><span class="lineno"> 1241</span>&#160;<span class="comment">    while(result.next())</span></div>
<div class="line"><a name="l01242"></a><span class="lineno"> 1242</span>&#160;<span class="comment">    {</span></div>
<div class="line"><a name="l01243"></a><span class="lineno"> 1243</span>&#160;<span class="comment">        exp.getHPLC().getGradient().addTimepoint(result.value(0).toInt());</span></div>
<div class="line"><a name="l01244"></a><span class="lineno"> 1244</span>&#160;<span class="comment">    }</span></div>
<div class="line"><a name="l01245"></a><span class="lineno"> 1245</span>&#160;<span class="comment">    */</span></div>
<div class="line"><a name="l01246"></a><span class="lineno"> 1246</span>&#160;</div>
<div class="line"><a name="l01247"></a><span class="lineno"> 1247</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Name,Time,Percentage FROM META_GradientEluent, META_GradientTime, META_GradientPercentage WHERE META_GradientEluent.fid_HPLC=&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot; AND fid_GradientEluent=META_GradientEluent.id AND fid_GradientTime=META_GradientTime.id&quot;</span>;</div>
<div class="line"><a name="l01248"></a><span class="lineno"> 1248</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01249"></a><span class="lineno"> 1249</span>&#160;    <span class="keywordflow">if</span> (result.isValid())</div>
<div class="line"><a name="l01250"></a><span class="lineno"> 1250</span>&#160;    {</div>
<div class="line"><a name="l01251"></a><span class="lineno"> 1251</span>&#160;      last_name = result.value(0).toString();</div>
<div class="line"><a name="l01252"></a><span class="lineno"> 1252</span>&#160;      exp.getHPLC().getGradient().addEluent(last_name);</div>
<div class="line"><a name="l01253"></a><span class="lineno"> 1253</span>&#160;    }</div>
<div class="line"><a name="l01254"></a><span class="lineno"> 1254</span>&#160;</div>
<div class="line"><a name="l01255"></a><span class="lineno"> 1255</span>&#160;    <span class="keywordflow">while</span> (result.isValid())</div>
<div class="line"><a name="l01256"></a><span class="lineno"> 1256</span>&#160;    {</div>
<div class="line"><a name="l01257"></a><span class="lineno"> 1257</span>&#160;      <span class="keywordflow">if</span> (result.value(0).toString() != last_name.<a class="code" href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">toQString</a>())</div>
<div class="line"><a name="l01258"></a><span class="lineno"> 1258</span>&#160;      {</div>
<div class="line"><a name="l01259"></a><span class="lineno"> 1259</span>&#160;        exp.getHPLC().getGradient().addEluent(result.value(0).toString());</div>
<div class="line"><a name="l01260"></a><span class="lineno"> 1260</span>&#160;        timepoints_done = <span class="keyword">true</span>;</div>
<div class="line"><a name="l01261"></a><span class="lineno"> 1261</span>&#160;      }</div>
<div class="line"><a name="l01262"></a><span class="lineno"> 1262</span>&#160;</div>
<div class="line"><a name="l01263"></a><span class="lineno"> 1263</span>&#160;      <span class="keywordflow">if</span> (timepoints_done == <span class="keyword">false</span>)</div>
<div class="line"><a name="l01264"></a><span class="lineno"> 1264</span>&#160;      {</div>
<div class="line"><a name="l01265"></a><span class="lineno"> 1265</span>&#160;        exp.getHPLC().getGradient().addTimepoint(result.value(1).toInt());</div>
<div class="line"><a name="l01266"></a><span class="lineno"> 1266</span>&#160;      }</div>
<div class="line"><a name="l01267"></a><span class="lineno"> 1267</span>&#160;</div>
<div class="line"><a name="l01268"></a><span class="lineno"> 1268</span>&#160;      exp.getHPLC().getGradient().setPercentage(result.value(0).toString(), result.value(1).toInt(), result.value(2).toInt());</div>
<div class="line"><a name="l01269"></a><span class="lineno"> 1269</span>&#160;</div>
<div class="line"><a name="l01270"></a><span class="lineno"> 1270</span>&#160;      last_name = result.value(0).toString();</div>
<div class="line"><a name="l01271"></a><span class="lineno"> 1271</span>&#160;      result.next();</div>
<div class="line"><a name="l01272"></a><span class="lineno"> 1272</span>&#160;    }</div>
<div class="line"><a name="l01273"></a><span class="lineno"> 1273</span>&#160;</div>
<div class="line"><a name="l01274"></a><span class="lineno"> 1274</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01275"></a><span class="lineno"> 1275</span>&#160;    <span class="comment">//------------------------------- load INSTRUMENT ----------------------------------------</span></div>
<div class="line"><a name="l01276"></a><span class="lineno"> 1276</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01277"></a><span class="lineno"> 1277</span>&#160;</div>
<div class="line"><a name="l01278"></a><span class="lineno"> 1278</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01279"></a><span class="lineno"> 1279</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT id,Model,Vendor,Description,IonOpticsType-1,fid_MetaInfo FROM META_MSInstrument WHERE fid_MSExperiment=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01280"></a><span class="lineno"> 1280</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01281"></a><span class="lineno"> 1281</span>&#160;</div>
<div class="line"><a name="l01282"></a><span class="lineno"> 1282</span>&#160;    parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l01283"></a><span class="lineno"> 1283</span>&#160;    exp.getInstrument().setModel(result.value(1).toString());</div>
<div class="line"><a name="l01284"></a><span class="lineno"> 1284</span>&#160;    exp.getInstrument().setVendor(result.value(2).toString());</div>
<div class="line"><a name="l01285"></a><span class="lineno"> 1285</span>&#160;    exp.getInstrument().setCustomizations(result.value(3).toString());</div>
<div class="line"><a name="l01286"></a><span class="lineno"> 1286</span>&#160;    exp.getInstrument().setIonOptics((<a class="code" href="classOpenMS_1_1Instrument.html#ad37f94415197fe6b7ab39e705877825e">Instrument::IonOpticsType</a>) result.value(4).toInt());</div>
<div class="line"><a name="l01287"></a><span class="lineno"> 1287</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(5).toInt(), exp.getInstrument());</div>
<div class="line"><a name="l01288"></a><span class="lineno"> 1288</span>&#160;</div>
<div class="line"><a name="l01289"></a><span class="lineno"> 1289</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01290"></a><span class="lineno"> 1290</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Name,Version,fid_MetaInfo, id FROM META_Software WHERE fid_SoftwareApplicator=&#39;&quot;</span> &lt;&lt; result.value(0).toInt() &lt;&lt; <span class="stringliteral">&quot;&#39; AND SoftwareApplicator = &#39;META_MSInstrument&#39;&quot;</span>;</div>
<div class="line"><a name="l01291"></a><span class="lineno"> 1291</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01292"></a><span class="lineno"> 1292</span>&#160;    <span class="keywordflow">if</span> (result.isValid())</div>
<div class="line"><a name="l01293"></a><span class="lineno"> 1293</span>&#160;    {</div>
<div class="line"><a name="l01294"></a><span class="lineno"> 1294</span>&#160;      <a class="code" href="classOpenMS_1_1Software.html">Software</a> sw;</div>
<div class="line"><a name="l01295"></a><span class="lineno"> 1295</span>&#160;      sw.<a class="code" href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(result.value(0).toString());</div>
<div class="line"><a name="l01296"></a><span class="lineno"> 1296</span>&#160;      sw.<a class="code" href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">setVersion</a>(result.value(1).toString());</div>
<div class="line"><a name="l01297"></a><span class="lineno"> 1297</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(2).toInt(), sw);</div>
<div class="line"><a name="l01298"></a><span class="lineno"> 1298</span>&#160;</div>
<div class="line"><a name="l01299"></a><span class="lineno"> 1299</span>&#160;      exp.getInstrument().setSoftware(sw);</div>
<div class="line"><a name="l01300"></a><span class="lineno"> 1300</span>&#160;    }</div>
<div class="line"><a name="l01301"></a><span class="lineno"> 1301</span>&#160;</div>
<div class="line"><a name="l01302"></a><span class="lineno"> 1302</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01303"></a><span class="lineno"> 1303</span>&#160;    <span class="comment">//------------------------------- load IONDETECTORS --------------------------------------</span></div>
<div class="line"><a name="l01304"></a><span class="lineno"> 1304</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01305"></a><span class="lineno"> 1305</span>&#160;    std::vector&lt;IonDetector&gt; detectors;</div>
<div class="line"><a name="l01306"></a><span class="lineno"> 1306</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01307"></a><span class="lineno"> 1307</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT AcquisitionMode-1,Type-1,Resolution,ADCSamplingFrequency,InstrumentOrder,fid_MetaInfo FROM META_IonDetector WHERE fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01308"></a><span class="lineno"> 1308</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01309"></a><span class="lineno"> 1309</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01310"></a><span class="lineno"> 1310</span>&#160;    {</div>
<div class="line"><a name="l01311"></a><span class="lineno"> 1311</span>&#160;      <a class="code" href="classOpenMS_1_1IonDetector.html">IonDetector</a> detector;</div>
<div class="line"><a name="l01312"></a><span class="lineno"> 1312</span>&#160;      detector.<a class="code" href="classOpenMS_1_1IonDetector.html#a89af53dd08978920d0acde6115b8b485">setAcquisitionMode</a>((<a class="code" href="classOpenMS_1_1IonDetector.html#ab0301b5c82d74538dfffc98406254e11">IonDetector::AcquisitionMode</a>) result.value(0).toInt());</div>
<div class="line"><a name="l01313"></a><span class="lineno"> 1313</span>&#160;      detector.<a class="code" href="classOpenMS_1_1IonDetector.html#a608e58a2f9fb7e497f91662a6e9ae4cc">setType</a>((<a class="code" href="classOpenMS_1_1IonDetector.html#a1d1cfd8ffb84e947f82999c682b666a7">IonDetector::Type</a>) result.value(1).toInt());</div>
<div class="line"><a name="l01314"></a><span class="lineno"> 1314</span>&#160;      detector.<a class="code" href="classOpenMS_1_1IonDetector.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">setResolution</a>(result.value(2).toDouble());</div>
<div class="line"><a name="l01315"></a><span class="lineno"> 1315</span>&#160;      detector.<a class="code" href="classOpenMS_1_1IonDetector.html#ab9933015a94bdd9827b4a417232b82f2">setADCSamplingFrequency</a>(result.value(3).toDouble());</div>
<div class="line"><a name="l01316"></a><span class="lineno"> 1316</span>&#160;      detector.<a class="code" href="classOpenMS_1_1IonDetector.html#a5b7d6f465d2b2dade6c296d9aa439b9c">setOrder</a>(result.value(4).toInt());</div>
<div class="line"><a name="l01317"></a><span class="lineno"> 1317</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(5).toInt(), detector);</div>
<div class="line"><a name="l01318"></a><span class="lineno"> 1318</span>&#160;</div>
<div class="line"><a name="l01319"></a><span class="lineno"> 1319</span>&#160;      detectors.push_back(detector);</div>
<div class="line"><a name="l01320"></a><span class="lineno"> 1320</span>&#160;    }</div>
<div class="line"><a name="l01321"></a><span class="lineno"> 1321</span>&#160;    exp.getInstrument().setIonDetectors(detectors);</div>
<div class="line"><a name="l01322"></a><span class="lineno"> 1322</span>&#160;</div>
<div class="line"><a name="l01323"></a><span class="lineno"> 1323</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01324"></a><span class="lineno"> 1324</span>&#160;    <span class="comment">//------------------------------- load IONSOURCES --------------------------------------</span></div>
<div class="line"><a name="l01325"></a><span class="lineno"> 1325</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01326"></a><span class="lineno"> 1326</span>&#160;    std::vector&lt;IonSource&gt; sources;</div>
<div class="line"><a name="l01327"></a><span class="lineno"> 1327</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01328"></a><span class="lineno"> 1328</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT InletType-1,IonizationMethod-1,IonizationMode-1,InstrumentOrder,fid_MetaInfo FROM META_IonSource WHERE fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01329"></a><span class="lineno"> 1329</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01330"></a><span class="lineno"> 1330</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01331"></a><span class="lineno"> 1331</span>&#160;    {</div>
<div class="line"><a name="l01332"></a><span class="lineno"> 1332</span>&#160;      <a class="code" href="classOpenMS_1_1IonSource.html">IonSource</a> source;</div>
<div class="line"><a name="l01333"></a><span class="lineno"> 1333</span>&#160;      source.<a class="code" href="classOpenMS_1_1IonSource.html#a373113a64e05061b5d1ad3070180ebee">setInletType</a>((<a class="code" href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675f">IonSource::InletType</a>) result.value(0).toInt());</div>
<div class="line"><a name="l01334"></a><span class="lineno"> 1334</span>&#160;      source.<a class="code" href="classOpenMS_1_1IonSource.html#a3188359ccfe5a3afff5d3bcbb0e26abb">setIonizationMethod</a>((<a class="code" href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4">IonSource::IonizationMethod</a>) result.value(1).toInt());</div>
<div class="line"><a name="l01335"></a><span class="lineno"> 1335</span>&#160;      source.<a class="code" href="classOpenMS_1_1IonSource.html#a1d9f4ba1e172a487acb87c951b40b31e">setPolarity</a>((<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054">IonSource::Polarity</a>)(<a class="code" href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">Int</a>) result.value(2).toDouble());</div>
<div class="line"><a name="l01336"></a><span class="lineno"> 1336</span>&#160;      source.<a class="code" href="classOpenMS_1_1IonSource.html#a5b7d6f465d2b2dade6c296d9aa439b9c">setOrder</a>(result.value(3).toInt());</div>
<div class="line"><a name="l01337"></a><span class="lineno"> 1337</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(4).toInt(), source);</div>
<div class="line"><a name="l01338"></a><span class="lineno"> 1338</span>&#160;</div>
<div class="line"><a name="l01339"></a><span class="lineno"> 1339</span>&#160;      sources.push_back(source);</div>
<div class="line"><a name="l01340"></a><span class="lineno"> 1340</span>&#160;    }</div>
<div class="line"><a name="l01341"></a><span class="lineno"> 1341</span>&#160;    exp.getInstrument().setIonSources(sources);</div>
<div class="line"><a name="l01342"></a><span class="lineno"> 1342</span>&#160;</div>
<div class="line"><a name="l01343"></a><span class="lineno"> 1343</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01344"></a><span class="lineno"> 1344</span>&#160;    <span class="comment">//------------------------------- load MASSANALYZERS ------------------------------------</span></div>
<div class="line"><a name="l01345"></a><span class="lineno"> 1345</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01346"></a><span class="lineno"> 1346</span>&#160;    std::vector&lt;MassAnalyzer&gt; analyzers;</div>
<div class="line"><a name="l01347"></a><span class="lineno"> 1347</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01348"></a><span class="lineno"> 1348</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Accuracy,FinalMSExponent,IsolationWidth,MagneticFieldStrength,ReflectronState-1,Resolution,ResolutionMethod-1,ResolutionType-1,ScanDirection-1,ScanLaw-1,ScanRate,ScanTime,TOFPathLength,Type-1,InstrumentOrder,fid_MetaInfo FROM META_MassAnalyzer WHERE fid_MSInstrument=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01349"></a><span class="lineno"> 1349</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01350"></a><span class="lineno"> 1350</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01351"></a><span class="lineno"> 1351</span>&#160;    {</div>
<div class="line"><a name="l01352"></a><span class="lineno"> 1352</span>&#160;      <a class="code" href="classOpenMS_1_1MassAnalyzer.html">MassAnalyzer</a> analyzer;</div>
<div class="line"><a name="l01353"></a><span class="lineno"> 1353</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a48bdc5161d32fad1317ecc6d1a3fc974">setAccuracy</a>(result.value(0).toDouble());</div>
<div class="line"><a name="l01354"></a><span class="lineno"> 1354</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a55f2fe6f72e20af53d3620f79386edac">setFinalMSExponent</a>(result.value(1).toInt());</div>
<div class="line"><a name="l01355"></a><span class="lineno"> 1355</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a2e362a69ba721e7ea80a89c46a997af6">setIsolationWidth</a>(result.value(2).toDouble());</div>
<div class="line"><a name="l01356"></a><span class="lineno"> 1356</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a113d974e38726fb862cd6765a3e04e14">setMagneticFieldStrength</a>(result.value(3).toDouble());</div>
<div class="line"><a name="l01357"></a><span class="lineno"> 1357</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a000fcbba4b64f34da2819581fc35443f">setReflectronState</a>((<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a4f15a2dc6638a7bdbcc97cab181bd52f">MassAnalyzer::ReflectronState</a>) result.value(4).toInt());</div>
<div class="line"><a name="l01358"></a><span class="lineno"> 1358</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">setResolution</a>(result.value(5).toDouble());</div>
<div class="line"><a name="l01359"></a><span class="lineno"> 1359</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a248c39266a3935b06b981254aa02487a">setResolutionMethod</a>((<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a11053909f1f8edf7b9ccc41c1417ecf6">MassAnalyzer::ResolutionMethod</a>) result.value(6).toInt());</div>
<div class="line"><a name="l01360"></a><span class="lineno"> 1360</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a6394f9d7a9b0355daca159b81617341c">setResolutionType</a>((<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a34bdf8df14c74a4beb0f343aa8141e60">MassAnalyzer::ResolutionType</a>) result.value(7).toInt());</div>
<div class="line"><a name="l01361"></a><span class="lineno"> 1361</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#af4b42c1902b00befb435be5e0e2239ee">setScanDirection</a>((<a class="code" href="classOpenMS_1_1MassAnalyzer.html#af4814792a42869dd07f2a81726b38402">MassAnalyzer::ScanDirection</a>) result.value(8).toInt());</div>
<div class="line"><a name="l01362"></a><span class="lineno"> 1362</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#ac47980cff52080e1fd46f1983ff8d960">setScanLaw</a>((<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a7652e90863e029a4e3620fdefb4cb854">MassAnalyzer::ScanLaw</a>) result.value(9).toInt());</div>
<div class="line"><a name="l01363"></a><span class="lineno"> 1363</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#ab478332cfcbe095f4ccce9381d7af978">setScanRate</a>(result.value(10).toDouble());</div>
<div class="line"><a name="l01364"></a><span class="lineno"> 1364</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a475edd3f1f00cb539e5812ecb0a6ca23">setScanTime</a>(result.value(11).toDouble());</div>
<div class="line"><a name="l01365"></a><span class="lineno"> 1365</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a695379d31d23162e1a471951b21e6ba6">setTOFTotalPathLength</a>(result.value(12).toDouble());</div>
<div class="line"><a name="l01366"></a><span class="lineno"> 1366</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#aef26ae8a53a25dd2da573e980e8a5568">setType</a>((<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3">MassAnalyzer::AnalyzerType</a>) result.value(13).toInt());</div>
<div class="line"><a name="l01367"></a><span class="lineno"> 1367</span>&#160;      analyzer.<a class="code" href="classOpenMS_1_1MassAnalyzer.html#a5b7d6f465d2b2dade6c296d9aa439b9c">setOrder</a>(result.value(14).toInt());</div>
<div class="line"><a name="l01368"></a><span class="lineno"> 1368</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(15).toInt(), analyzer);</div>
<div class="line"><a name="l01369"></a><span class="lineno"> 1369</span>&#160;</div>
<div class="line"><a name="l01370"></a><span class="lineno"> 1370</span>&#160;      analyzers.push_back(analyzer);</div>
<div class="line"><a name="l01371"></a><span class="lineno"> 1371</span>&#160;    }</div>
<div class="line"><a name="l01372"></a><span class="lineno"> 1372</span>&#160;    exp.getInstrument().setMassAnalyzers(analyzers);</div>
<div class="line"><a name="l01373"></a><span class="lineno"> 1373</span>&#160;</div>
<div class="line"><a name="l01374"></a><span class="lineno"> 1374</span>&#160;    <span class="comment">//id</span></div>
<div class="line"><a name="l01375"></a><span class="lineno"> 1375</span>&#160;    exp.setPersistenceId(<span class="keywordtype">id</span>);</div>
<div class="line"><a name="l01376"></a><span class="lineno"> 1376</span>&#160;</div>
<div class="line"><a name="l01377"></a><span class="lineno"> 1377</span>&#160;    <span class="comment">// if we don&#39;t have to load the spectra, we&#39;re already done</span></div>
<div class="line"><a name="l01378"></a><span class="lineno"> 1378</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#ab67bae9dafa817481d9efe286bf853c0">getMetadataOnly</a>())</div>
<div class="line"><a name="l01379"></a><span class="lineno"> 1379</span>&#160;    {</div>
<div class="line"><a name="l01380"></a><span class="lineno"> 1380</span>&#160;      <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l01381"></a><span class="lineno"> 1381</span>&#160;    }</div>
<div class="line"><a name="l01382"></a><span class="lineno"> 1382</span>&#160;</div>
<div class="line"><a name="l01383"></a><span class="lineno"> 1383</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01384"></a><span class="lineno"> 1384</span>&#160;    <span class="comment">//----------------------------------- load SPECTRAS --------------------------------------</span></div>
<div class="line"><a name="l01385"></a><span class="lineno"> 1385</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01386"></a><span class="lineno"> 1386</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01387"></a><span class="lineno"> 1387</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM DATA_Spectrum WHERE fid_MSExperiment=&quot;</span> &lt;&lt; id;</div>
<div class="line"><a name="l01388"></a><span class="lineno"> 1388</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a2c04b86565fbb199cbb2209a4588f4de">hasRTRange</a>())</div>
<div class="line"><a name="l01389"></a><span class="lineno"> 1389</span>&#160;    {</div>
<div class="line"><a name="l01390"></a><span class="lineno"> 1390</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot; AND RetentionTime &gt; &quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a5cb3d70f7095ec7538835c895fac78d7">getRTRange</a>().<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">minPosition</a>() &lt;&lt; <span class="stringliteral">&quot; AND RetentionTime &lt; &quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a5cb3d70f7095ec7538835c895fac78d7">getRTRange</a>().<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">maxPosition</a>();</div>
<div class="line"><a name="l01391"></a><span class="lineno"> 1391</span>&#160;    }</div>
<div class="line"><a name="l01392"></a><span class="lineno"> 1392</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a263b56e8754e50f0aa55595b7c76d387">hasMSLevels</a>())</div>
<div class="line"><a name="l01393"></a><span class="lineno"> 1393</span>&#160;    {</div>
<div class="line"><a name="l01394"></a><span class="lineno"> 1394</span>&#160;      <span class="keyword">const</span> std::vector&lt;int&gt; &amp; levels = <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a9843017b53501a87d8a747895c4cf073">getMSLevels</a>();</div>
<div class="line"><a name="l01395"></a><span class="lineno"> 1395</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot; AND (&quot;</span>;</div>
<div class="line"><a name="l01396"></a><span class="lineno"> 1396</span>&#160;      <span class="keywordflow">for</span> (std::vector&lt;int&gt;::const_iterator it = levels.begin(); it != levels.end(); it++)</div>
<div class="line"><a name="l01397"></a><span class="lineno"> 1397</span>&#160;      {</div>
<div class="line"><a name="l01398"></a><span class="lineno"> 1398</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;MSLevel=&quot;</span> &lt;&lt; *it;</div>
<div class="line"><a name="l01399"></a><span class="lineno"> 1399</span>&#160;        <span class="keywordflow">if</span> (it + 1 != levels.end())</div>
<div class="line"><a name="l01400"></a><span class="lineno"> 1400</span>&#160;        {</div>
<div class="line"><a name="l01401"></a><span class="lineno"> 1401</span>&#160;          query &lt;&lt; <span class="stringliteral">&quot; OR &quot;</span>;</div>
<div class="line"><a name="l01402"></a><span class="lineno"> 1402</span>&#160;        }</div>
<div class="line"><a name="l01403"></a><span class="lineno"> 1403</span>&#160;      }</div>
<div class="line"><a name="l01404"></a><span class="lineno"> 1404</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;)&quot;</span>;</div>
<div class="line"><a name="l01405"></a><span class="lineno"> 1405</span>&#160;    }</div>
<div class="line"><a name="l01406"></a><span class="lineno"> 1406</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot; ORDER BY id ASC&quot;</span>;</div>
<div class="line"><a name="l01407"></a><span class="lineno"> 1407</span>&#160;</div>
<div class="line"><a name="l01408"></a><span class="lineno"> 1408</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01409"></a><span class="lineno"> 1409</span>&#160;    exp.resize(result.size());</div>
<div class="line"><a name="l01410"></a><span class="lineno"> 1410</span>&#160;    <a class="code" href="classunsigned_01int.html">UInt</a> i = 0;</div>
<div class="line"><a name="l01411"></a><span class="lineno"> 1411</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01412"></a><span class="lineno"> 1412</span>&#160;    {</div>
<div class="line"><a name="l01413"></a><span class="lineno"> 1413</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">loadSpectrum</a>(result.value(0).toInt(), exp[i]);</div>
<div class="line"><a name="l01414"></a><span class="lineno"> 1414</span>&#160;      ++i;</div>
<div class="line"><a name="l01415"></a><span class="lineno"> 1415</span>&#160;    }</div>
<div class="line"><a name="l01416"></a><span class="lineno"> 1416</span>&#160;</div>
<div class="line"><a name="l01417"></a><span class="lineno"> 1417</span>&#160;  }</div>
<div class="line"><a name="l01418"></a><span class="lineno"> 1418</span>&#160;</div>
<div class="line"><a name="l01419"></a><span class="lineno"> 1419</span>&#160;  <span class="keyword">template</span> &lt;<span class="keyword">class</span> SpectrumType&gt;</div>
<div class="line"><a name="l01420"></a><span class="lineno"><a class="line" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df"> 1420</a></span>&#160;  <span class="keywordtype">void</span> <a class="code" href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">DBAdapter::loadSpectrum</a>(<a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> <span class="keywordtype">id</span>, SpectrumType &amp; spec)</div>
<div class="line"><a name="l01421"></a><span class="lineno"> 1421</span>&#160;  {</div>
<div class="line"><a name="l01422"></a><span class="lineno"> 1422</span>&#160;</div>
<div class="line"><a name="l01423"></a><span class="lineno"> 1423</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01424"></a><span class="lineno"> 1424</span>&#160;    <span class="comment">//------------------------------- CHECK DB VERSION ---------------------------------------</span></div>
<div class="line"><a name="l01425"></a><span class="lineno"> 1425</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01426"></a><span class="lineno"> 1426</span>&#160;    <span class="keywordflow">if</span> (!<a class="code" href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">checkDBVersion</a>(<span class="keyword">true</span>))</div>
<div class="line"><a name="l01427"></a><span class="lineno"> 1427</span>&#160;      <span class="keywordflow">return</span>;</div>
<div class="line"><a name="l01428"></a><span class="lineno"> 1428</span>&#160;</div>
<div class="line"><a name="l01429"></a><span class="lineno"> 1429</span>&#160;    spec = SpectrumType();</div>
<div class="line"><a name="l01430"></a><span class="lineno"> 1430</span>&#160;</div>
<div class="line"><a name="l01431"></a><span class="lineno"> 1431</span>&#160;    std::stringstream query;         <span class="comment">// query to build</span></div>
<div class="line"><a name="l01432"></a><span class="lineno"> 1432</span>&#160;    QSqlQuery result, sub_result;    <span class="comment">// place to store the query results in</span></div>
<div class="line"><a name="l01433"></a><span class="lineno"> 1433</span>&#160;    <a class="code" href="classOpenMS_1_1InstrumentSettings.html">InstrumentSettings</a> settings;     <span class="comment">// stores settings that are read from DB</span></div>
<div class="line"><a name="l01434"></a><span class="lineno"> 1434</span>&#160;    <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> parent_id;                   <span class="comment">// stores parent_id of Acquisition</span></div>
<div class="line"><a name="l01435"></a><span class="lineno"> 1435</span>&#160;</div>
<div class="line"><a name="l01436"></a><span class="lineno"> 1436</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Type-1,NativeID, RetentionTime,MSLevel,Description,fid_MetaInfo,fid_File FROM DATA_Spectrum WHERE id=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01437"></a><span class="lineno"> 1437</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01438"></a><span class="lineno"> 1438</span>&#160;</div>
<div class="line"><a name="l01439"></a><span class="lineno"> 1439</span>&#160;    <span class="comment">//Spectrum meta info</span></div>
<div class="line"><a name="l01440"></a><span class="lineno"> 1440</span>&#160;    spec.setType((<a class="code" href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">SpectrumSettings::SpectrumType</a>)(result.value(0).toInt()));</div>
<div class="line"><a name="l01441"></a><span class="lineno"> 1441</span>&#160;    spec.setNativeID(result.value(1).toString());</div>
<div class="line"><a name="l01442"></a><span class="lineno"> 1442</span>&#160;    spec.setRT(result.value(2).toDouble());</div>
<div class="line"><a name="l01443"></a><span class="lineno"> 1443</span>&#160;    spec.setMSLevel(result.value(3).toInt());</div>
<div class="line"><a name="l01444"></a><span class="lineno"> 1444</span>&#160;    spec.setComment(result.value(4).toString());</div>
<div class="line"><a name="l01445"></a><span class="lineno"> 1445</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(5).toInt(), spec);</div>
<div class="line"><a name="l01446"></a><span class="lineno"> 1446</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#af790bad53b9ea670e78d4d8f72fbd04c">loadFile_</a>(result.value(6).toInt(), spec.getSourceFile());</div>
<div class="line"><a name="l01447"></a><span class="lineno"> 1447</span>&#160;</div>
<div class="line"><a name="l01448"></a><span class="lineno"> 1448</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01449"></a><span class="lineno"> 1449</span>&#160;    <span class="comment">//------------------------------- load INSTRUMENTSETTINGS --------------------------------</span></div>
<div class="line"><a name="l01450"></a><span class="lineno"> 1450</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01451"></a><span class="lineno"> 1451</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01452"></a><span class="lineno"> 1452</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Polarity-1, ScanMode-1, ZoomScan, fid_MetaInfo FROM META_InstrumentSettings WHERE fid_Spectrum=&quot;</span> &lt;&lt; id;</div>
<div class="line"><a name="l01453"></a><span class="lineno"> 1453</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01454"></a><span class="lineno"> 1454</span>&#160;</div>
<div class="line"><a name="l01455"></a><span class="lineno"> 1455</span>&#160;    settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">setPolarity</a>((<a class="code" href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054">IonSource::Polarity</a>) (result.value(0).toInt()));</div>
<div class="line"><a name="l01456"></a><span class="lineno"> 1456</span>&#160;    settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#ae5412841952d50bcec24df4868e86e67">setScanMode</a>((<a class="code" href="classOpenMS_1_1InstrumentSettings.html#af9e3bb003dab9b2cf00854a1eb3b01f0">InstrumentSettings::ScanMode</a>) (result.value(1).toInt()));</div>
<div class="line"><a name="l01457"></a><span class="lineno"> 1457</span>&#160;    settings.<a class="code" href="classOpenMS_1_1InstrumentSettings.html#a71de61b67afb629b55d610f58bebb554">setZoomScan</a>(result.value(2).toBool());</div>
<div class="line"><a name="l01458"></a><span class="lineno"> 1458</span>&#160;    spec.setInstrumentSettings(settings);</div>
<div class="line"><a name="l01459"></a><span class="lineno"> 1459</span>&#160;    <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(3).toInt(), spec.getInstrumentSettings());</div>
<div class="line"><a name="l01460"></a><span class="lineno"> 1460</span>&#160;</div>
<div class="line"><a name="l01461"></a><span class="lineno"> 1461</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01462"></a><span class="lineno"> 1462</span>&#160;    <span class="comment">//------------------------------- load SCANWINDOWS --------------------------------------</span></div>
<div class="line"><a name="l01463"></a><span class="lineno"> 1463</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01464"></a><span class="lineno"> 1464</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01465"></a><span class="lineno"> 1465</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT MZRangeBegin,MZRangeEnd,fid_MetaInfo FROM META_ScanWindows WHERE fid_Spectrum=&quot;</span> &lt;&lt; id;</div>
<div class="line"><a name="l01466"></a><span class="lineno"> 1466</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01467"></a><span class="lineno"> 1467</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01468"></a><span class="lineno"> 1468</span>&#160;    {</div>
<div class="line"><a name="l01469"></a><span class="lineno"> 1469</span>&#160;      <a class="code" href="structOpenMS_1_1ScanWindow.html">ScanWindow</a> window;</div>
<div class="line"><a name="l01470"></a><span class="lineno"> 1470</span>&#160;      window.<a class="code" href="structOpenMS_1_1ScanWindow.html#aea3ca80628c489842c52a61e195dd047">begin</a> = result.value(0).toDouble();</div>
<div class="line"><a name="l01471"></a><span class="lineno"> 1471</span>&#160;      window.<a class="code" href="structOpenMS_1_1ScanWindow.html#aed18ab075b5c0317ae32335a57f899e8">end</a> = result.value(1).toDouble();</div>
<div class="line"><a name="l01472"></a><span class="lineno"> 1472</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(2).toInt(), window);</div>
<div class="line"><a name="l01473"></a><span class="lineno"> 1473</span>&#160;      spec.getInstrumentSettings().getScanWindows().push_back(window);</div>
<div class="line"><a name="l01474"></a><span class="lineno"> 1474</span>&#160;    }</div>
<div class="line"><a name="l01475"></a><span class="lineno"> 1475</span>&#160;</div>
<div class="line"><a name="l01476"></a><span class="lineno"> 1476</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01477"></a><span class="lineno"> 1477</span>&#160;    <span class="comment">//----------------- load PEPTIDEIDENTIFICATION / PEPTIDEHITS ----------------------------</span></div>
<div class="line"><a name="l01478"></a><span class="lineno"> 1478</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01479"></a><span class="lineno"> 1479</span>&#160;</div>
<div class="line"><a name="l01480"></a><span class="lineno"> 1480</span>&#160;</div>
<div class="line"><a name="l01481"></a><span class="lineno"> 1481</span>&#160;    std::vector&lt;PeptideIdentification&gt; pei_vec;</div>
<div class="line"><a name="l01482"></a><span class="lineno"> 1482</span>&#160;    std::vector&lt;PeptideHit&gt; peh_vec;</div>
<div class="line"><a name="l01483"></a><span class="lineno"> 1483</span>&#160;    <a class="code" href="classOpenMS_1_1PeptideIdentification.html">PeptideIdentification</a> pei;</div>
<div class="line"><a name="l01484"></a><span class="lineno"> 1484</span>&#160;    <a class="code" href="classOpenMS_1_1PeptideHit.html">PeptideHit</a> peh;</div>
<div class="line"><a name="l01485"></a><span class="lineno"> 1485</span>&#160;</div>
<div class="line"><a name="l01486"></a><span class="lineno"> 1486</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01487"></a><span class="lineno"> 1487</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT id, SignificanceThreshold, ScoreType, HigherScoreBetter, fid_MetaInfo, fid_File FROM ID_PeptideIdentification WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01488"></a><span class="lineno"> 1488</span>&#160;</div>
<div class="line"><a name="l01489"></a><span class="lineno"> 1489</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01490"></a><span class="lineno"> 1490</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01491"></a><span class="lineno"> 1491</span>&#160;    {</div>
<div class="line"><a name="l01492"></a><span class="lineno"> 1492</span>&#160;      parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l01493"></a><span class="lineno"> 1493</span>&#160;      pei.<a class="code" href="classOpenMS_1_1PeptideIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">setSignificanceThreshold</a>(result.value(1).toDouble());</div>
<div class="line"><a name="l01494"></a><span class="lineno"> 1494</span>&#160;      pei.<a class="code" href="classOpenMS_1_1PeptideIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">setScoreType</a>(result.value(2).toString());</div>
<div class="line"><a name="l01495"></a><span class="lineno"> 1495</span>&#160;      pei.<a class="code" href="classOpenMS_1_1PeptideIdentification.html#a98447dc4641b69db36fcc5087cfe73e6">setHigherScoreBetter</a>(result.value(3).toInt());</div>
<div class="line"><a name="l01496"></a><span class="lineno"> 1496</span>&#160;</div>
<div class="line"><a name="l01497"></a><span class="lineno"> 1497</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(4).toInt(), pei);</div>
<div class="line"><a name="l01498"></a><span class="lineno"> 1498</span>&#160;      <span class="comment">//needs getter and setter methods first</span></div>
<div class="line"><a name="l01499"></a><span class="lineno"> 1499</span>&#160;      <span class="comment">//loadFile_(result.value(5).toInt(), pei.getSourceFile());</span></div>
<div class="line"><a name="l01500"></a><span class="lineno"> 1500</span>&#160;</div>
<div class="line"><a name="l01501"></a><span class="lineno"> 1501</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01502"></a><span class="lineno"> 1502</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT Score, Sequence, Charge, AABefore, AAAfter, fid_MetaInfo FROM ID_PeptideHit WHERE fid_Identification=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01503"></a><span class="lineno"> 1503</span>&#160;      sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01504"></a><span class="lineno"> 1504</span>&#160;</div>
<div class="line"><a name="l01505"></a><span class="lineno"> 1505</span>&#160;      <span class="keywordflow">while</span> (sub_result.next())</div>
<div class="line"><a name="l01506"></a><span class="lineno"> 1506</span>&#160;      {</div>
<div class="line"><a name="l01507"></a><span class="lineno"> 1507</span>&#160;        peh.<a class="code" href="classOpenMS_1_1PeptideHit.html#a2e9b7c12f6d8fa7415aa0aca69208f42">setScore</a>(sub_result.value(0).toDouble());</div>
<div class="line"><a name="l01508"></a><span class="lineno"> 1508</span>&#160;        peh.<a class="code" href="classOpenMS_1_1PeptideHit.html#a209d1e10f38a766c3f73c9666e89e14d">setSequence</a>(<a class="code" href="classOpenMS_1_1String.html">String</a>(sub_result.value(1).toString()));</div>
<div class="line"><a name="l01509"></a><span class="lineno"> 1509</span>&#160;        peh.<a class="code" href="classOpenMS_1_1PeptideHit.html#aca40a4630f5f8a0568899b74a62dcd4b">setCharge</a>(sub_result.value(2).toInt());</div>
<div class="line"><a name="l01510"></a><span class="lineno"> 1510</span>&#160;        peh.<a class="code" href="classOpenMS_1_1PeptideHit.html#aa50c3e3233976cef5c82cd6eed3f1768">setAABefore</a>(sub_result.value(3).toString().toStdString()[0]);</div>
<div class="line"><a name="l01511"></a><span class="lineno"> 1511</span>&#160;        peh.<a class="code" href="classOpenMS_1_1PeptideHit.html#a2f865e760a429c2648e2de2db7793fcb">setAAAfter</a>(sub_result.value(4).toString().toStdString()[0]);</div>
<div class="line"><a name="l01512"></a><span class="lineno"> 1512</span>&#160;</div>
<div class="line"><a name="l01513"></a><span class="lineno"> 1513</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(sub_result.value(5).toInt(), peh);</div>
<div class="line"><a name="l01514"></a><span class="lineno"> 1514</span>&#160;</div>
<div class="line"><a name="l01515"></a><span class="lineno"> 1515</span>&#160;        peh_vec.push_back(peh);</div>
<div class="line"><a name="l01516"></a><span class="lineno"> 1516</span>&#160;      }</div>
<div class="line"><a name="l01517"></a><span class="lineno"> 1517</span>&#160;</div>
<div class="line"><a name="l01518"></a><span class="lineno"> 1518</span>&#160;      pei.<a class="code" href="classOpenMS_1_1PeptideIdentification.html#ab4d15b02dbc53727d0b6dae927ad6688">setHits</a>(peh_vec);</div>
<div class="line"><a name="l01519"></a><span class="lineno"> 1519</span>&#160;</div>
<div class="line"><a name="l01520"></a><span class="lineno"> 1520</span>&#160;      pei_vec.push_back(pei);</div>
<div class="line"><a name="l01521"></a><span class="lineno"> 1521</span>&#160;    }</div>
<div class="line"><a name="l01522"></a><span class="lineno"> 1522</span>&#160;</div>
<div class="line"><a name="l01523"></a><span class="lineno"> 1523</span>&#160;    spec.setPeptideIdentifications(pei_vec);</div>
<div class="line"><a name="l01524"></a><span class="lineno"> 1524</span>&#160;</div>
<div class="line"><a name="l01525"></a><span class="lineno"> 1525</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01526"></a><span class="lineno"> 1526</span>&#160;    <span class="comment">//------------------------------- load AQUISITIONINFO --------------------------------------</span></div>
<div class="line"><a name="l01527"></a><span class="lineno"> 1527</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01528"></a><span class="lineno"> 1528</span>&#160;</div>
<div class="line"><a name="l01529"></a><span class="lineno"> 1529</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01530"></a><span class="lineno"> 1530</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT id, MethodOfCombination FROM META_AcquisitionInfo WHERE fid_Spectrum=&quot;</span> &lt;&lt; id;</div>
<div class="line"><a name="l01531"></a><span class="lineno"> 1531</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01532"></a><span class="lineno"> 1532</span>&#160;</div>
<div class="line"><a name="l01533"></a><span class="lineno"> 1533</span>&#160;    spec.getAcquisitionInfo().setMethodOfCombination(result.value(1).toString());</div>
<div class="line"><a name="l01534"></a><span class="lineno"> 1534</span>&#160;    parent_id = result.value(0).toInt();</div>
<div class="line"><a name="l01535"></a><span class="lineno"> 1535</span>&#160;</div>
<div class="line"><a name="l01536"></a><span class="lineno"> 1536</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01537"></a><span class="lineno"> 1537</span>&#160;    <span class="comment">//------------------------------- load AQUISITION ----------------------------------------</span></div>
<div class="line"><a name="l01538"></a><span class="lineno"> 1538</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01539"></a><span class="lineno"> 1539</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01540"></a><span class="lineno"> 1540</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Number,fid_MetaInfo FROM META_Acquisition WHERE fid_AcquisitionInfo=&#39;&quot;</span> &lt;&lt; parent_id &lt;&lt; <span class="stringliteral">&quot;&#39; ORDER BY id ASC&quot;</span>;</div>
<div class="line"><a name="l01541"></a><span class="lineno"> 1541</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01542"></a><span class="lineno"> 1542</span>&#160;</div>
<div class="line"><a name="l01543"></a><span class="lineno"> 1543</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01544"></a><span class="lineno"> 1544</span>&#160;    {</div>
<div class="line"><a name="l01545"></a><span class="lineno"> 1545</span>&#160;      <a class="code" href="classOpenMS_1_1Acquisition.html">Acquisition</a> acquisition;</div>
<div class="line"><a name="l01546"></a><span class="lineno"> 1546</span>&#160;      acquisition.<a class="code" href="classOpenMS_1_1Acquisition.html#a3ea2e9a83b6b409b673cac018f5099ab">setIdentifier</a>(result.value(0).toString());</div>
<div class="line"><a name="l01547"></a><span class="lineno"> 1547</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(1).toInt(), acquisition);</div>
<div class="line"><a name="l01548"></a><span class="lineno"> 1548</span>&#160;      spec.getAcquisitionInfo().push_back(acquisition);</div>
<div class="line"><a name="l01549"></a><span class="lineno"> 1549</span>&#160;    }</div>
<div class="line"><a name="l01550"></a><span class="lineno"> 1550</span>&#160;</div>
<div class="line"><a name="l01551"></a><span class="lineno"> 1551</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01552"></a><span class="lineno"> 1552</span>&#160;    <span class="comment">//------------------------------- load DATAPROCESSINGS -----------------------------------</span></div>
<div class="line"><a name="l01553"></a><span class="lineno"> 1553</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01554"></a><span class="lineno"> 1554</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01555"></a><span class="lineno"> 1555</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT CompletionTime,fid_MetaInfo, id FROM META_DataProcessing WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01556"></a><span class="lineno"> 1556</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01557"></a><span class="lineno"> 1557</span>&#160;</div>
<div class="line"><a name="l01558"></a><span class="lineno"> 1558</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01559"></a><span class="lineno"> 1559</span>&#160;    {</div>
<div class="line"><a name="l01560"></a><span class="lineno"> 1560</span>&#160;      <a class="code" href="classOpenMS_1_1DataProcessing.html">DataProcessing</a> processings;</div>
<div class="line"><a name="l01561"></a><span class="lineno"> 1561</span>&#160;</div>
<div class="line"><a name="l01562"></a><span class="lineno"> 1562</span>&#160;      <span class="keywordflow">try</span></div>
<div class="line"><a name="l01563"></a><span class="lineno"> 1563</span>&#160;      {</div>
<div class="line"><a name="l01564"></a><span class="lineno"> 1564</span>&#160;        <a class="code" href="classOpenMS_1_1DateTime.html">DateTime</a> d;</div>
<div class="line"><a name="l01565"></a><span class="lineno"> 1565</span>&#160;        d.<a class="code" href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">set</a>(result.value(0).toDateTime().toString(Qt::ISODate));</div>
<div class="line"><a name="l01566"></a><span class="lineno"> 1566</span>&#160;        processings.<a class="code" href="classOpenMS_1_1DataProcessing.html#a1429c5f03fd5bf24ca23b2666cd30422">setCompletionTime</a>(d);</div>
<div class="line"><a name="l01567"></a><span class="lineno"> 1567</span>&#160;      }</div>
<div class="line"><a name="l01568"></a><span class="lineno"> 1568</span>&#160;      <span class="keywordflow">catch</span> (<a class="code" href="classOpenMS_1_1Exception_1_1ParseError.html">Exception::ParseError</a> &amp;)</div>
<div class="line"><a name="l01569"></a><span class="lineno"> 1569</span>&#160;      {</div>
<div class="line"><a name="l01570"></a><span class="lineno"> 1570</span>&#160;        <span class="comment">//no nothing, the date is simply unset</span></div>
<div class="line"><a name="l01571"></a><span class="lineno"> 1571</span>&#160;      }</div>
<div class="line"><a name="l01572"></a><span class="lineno"> 1572</span>&#160;</div>
<div class="line"><a name="l01573"></a><span class="lineno"> 1573</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(1).toInt(), processings);</div>
<div class="line"><a name="l01574"></a><span class="lineno"> 1574</span>&#160;</div>
<div class="line"><a name="l01575"></a><span class="lineno"> 1575</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01576"></a><span class="lineno"> 1576</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT ProcessingActionType-1 FROM META_ProcessingActions WHERE fid_DataProcessing=&#39;&quot;</span> &lt;&lt; result.value(2).toInt() &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01577"></a><span class="lineno"> 1577</span>&#160;      sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01578"></a><span class="lineno"> 1578</span>&#160;      <span class="keywordflow">while</span> (sub_result.next())</div>
<div class="line"><a name="l01579"></a><span class="lineno"> 1579</span>&#160;      {</div>
<div class="line"><a name="l01580"></a><span class="lineno"> 1580</span>&#160;        processings.<a class="code" href="classOpenMS_1_1DataProcessing.html#ad34bb2f8f677e2f6c6c505d11754a765">getProcessingActions</a>().insert((<a class="code" href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9">DataProcessing::ProcessingAction</a>)sub_result.value(0).toInt());</div>
<div class="line"><a name="l01581"></a><span class="lineno"> 1581</span>&#160;      }</div>
<div class="line"><a name="l01582"></a><span class="lineno"> 1582</span>&#160;</div>
<div class="line"><a name="l01583"></a><span class="lineno"> 1583</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01584"></a><span class="lineno"> 1584</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT Name,Version,fid_MetaInfo, id FROM META_Software WHERE fid_SoftwareApplicator=&#39;&quot;</span> &lt;&lt; result.value(2).toInt() &lt;&lt; <span class="stringliteral">&quot;&#39; AND SoftwareApplicator = &#39;META_DataProcessing&#39;&quot;</span>;</div>
<div class="line"><a name="l01585"></a><span class="lineno"> 1585</span>&#160;      sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01586"></a><span class="lineno"> 1586</span>&#160;      <span class="keywordflow">if</span> (sub_result.isValid())</div>
<div class="line"><a name="l01587"></a><span class="lineno"> 1587</span>&#160;      {</div>
<div class="line"><a name="l01588"></a><span class="lineno"> 1588</span>&#160;        <a class="code" href="classOpenMS_1_1Software.html">Software</a> sw;</div>
<div class="line"><a name="l01589"></a><span class="lineno"> 1589</span>&#160;        sw.<a class="code" href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">setName</a>(sub_result.value(0).toString());</div>
<div class="line"><a name="l01590"></a><span class="lineno"> 1590</span>&#160;        sw.<a class="code" href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">setVersion</a>(sub_result.value(1).toString());</div>
<div class="line"><a name="l01591"></a><span class="lineno"> 1591</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(sub_result.value(2).toInt(), sw);</div>
<div class="line"><a name="l01592"></a><span class="lineno"> 1592</span>&#160;</div>
<div class="line"><a name="l01593"></a><span class="lineno"> 1593</span>&#160;        processings.<a class="code" href="classOpenMS_1_1DataProcessing.html#a8ff34073a7ed3fabe3f5deff96c0282e">setSoftware</a>(sw);</div>
<div class="line"><a name="l01594"></a><span class="lineno"> 1594</span>&#160;      }</div>
<div class="line"><a name="l01595"></a><span class="lineno"> 1595</span>&#160;</div>
<div class="line"><a name="l01596"></a><span class="lineno"> 1596</span>&#160;      spec.getDataProcessing().push_back(processings);</div>
<div class="line"><a name="l01597"></a><span class="lineno"> 1597</span>&#160;    }</div>
<div class="line"><a name="l01598"></a><span class="lineno"> 1598</span>&#160;</div>
<div class="line"><a name="l01599"></a><span class="lineno"> 1599</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01600"></a><span class="lineno"> 1600</span>&#160;    <span class="comment">//----------------- load METAINFODESCRIPTION/METADATAARRAYS ------------------------------</span></div>
<div class="line"><a name="l01601"></a><span class="lineno"> 1601</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01602"></a><span class="lineno"> 1602</span>&#160;</div>
<div class="line"><a name="l01603"></a><span class="lineno"> 1603</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01604"></a><span class="lineno"> 1604</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT Name, fid_MetaInfo FROM META_MetaInfoDescription WHERE fid_Spectrum=&quot;</span> &lt;&lt; id;</div>
<div class="line"><a name="l01605"></a><span class="lineno"> 1605</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01606"></a><span class="lineno"> 1606</span>&#160;</div>
<div class="line"><a name="l01607"></a><span class="lineno"> 1607</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01608"></a><span class="lineno"> 1608</span>&#160;    {</div>
<div class="line"><a name="l01609"></a><span class="lineno"> 1609</span>&#160;      <span class="keyword">typename</span> SpectrumType::FloatDataArray meta_array;</div>
<div class="line"><a name="l01610"></a><span class="lineno"> 1610</span>&#160;      meta_array.setName(result.value(0).toString());</div>
<div class="line"><a name="l01611"></a><span class="lineno"> 1611</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(1).toInt(), meta_array);</div>
<div class="line"><a name="l01612"></a><span class="lineno"> 1612</span>&#160;</div>
<div class="line"><a name="l01613"></a><span class="lineno"> 1613</span>&#160;      spec.getFloatDataArrays().push_back(meta_array);</div>
<div class="line"><a name="l01614"></a><span class="lineno"> 1614</span>&#160;    }</div>
<div class="line"><a name="l01615"></a><span class="lineno"> 1615</span>&#160;</div>
<div class="line"><a name="l01616"></a><span class="lineno"> 1616</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01617"></a><span class="lineno"> 1617</span>&#160;    <span class="comment">//------------------------------- load PRECURSOR ----------------------------------------</span></div>
<div class="line"><a name="l01618"></a><span class="lineno"> 1618</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01619"></a><span class="lineno"> 1619</span>&#160;    <span class="keywordflow">if</span> (spec.getMSLevel() &gt; 1)</div>
<div class="line"><a name="l01620"></a><span class="lineno"> 1620</span>&#160;    {</div>
<div class="line"><a name="l01621"></a><span class="lineno"> 1621</span>&#160;      query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01622"></a><span class="lineno"> 1622</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot;SELECT WindowMz,Intensity,Charge,ActivationEnergy,WindowLow,WindowUp,fid_MetaInfo,id FROM DATA_Precursor WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39; HAVING Intensity IS NOT NULL&quot;</span>;</div>
<div class="line"><a name="l01623"></a><span class="lineno"> 1623</span>&#160;      result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01624"></a><span class="lineno"> 1624</span>&#160;      spec.getPrecursors().resize(result.size());</div>
<div class="line"><a name="l01625"></a><span class="lineno"> 1625</span>&#160;      <a class="code" href="classunsigned_01int.html">UInt</a> res = 0;</div>
<div class="line"><a name="l01626"></a><span class="lineno"> 1626</span>&#160;      <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01627"></a><span class="lineno"> 1627</span>&#160;      {</div>
<div class="line"><a name="l01628"></a><span class="lineno"> 1628</span>&#160;        spec.getPrecursors()[res].setMZ(result.value(0).toDouble());</div>
<div class="line"><a name="l01629"></a><span class="lineno"> 1629</span>&#160;        spec.getPrecursors()[res].setIntensity(result.value(1).toDouble());</div>
<div class="line"><a name="l01630"></a><span class="lineno"> 1630</span>&#160;        spec.getPrecursors()[res].setCharge(result.value(2).toInt());</div>
<div class="line"><a name="l01631"></a><span class="lineno"> 1631</span>&#160;        spec.getPrecursors()[res].setActivationEnergy(result.value(3).toDouble());</div>
<div class="line"><a name="l01632"></a><span class="lineno"> 1632</span>&#160;        spec.getPrecursors()[res].setIsolationWindowLowerOffset(result.value(4).toDouble());</div>
<div class="line"><a name="l01633"></a><span class="lineno"> 1633</span>&#160;        spec.getPrecursors()[res].setIsolationWindowUpperOffset(result.value(5).toDouble());</div>
<div class="line"><a name="l01634"></a><span class="lineno"> 1634</span>&#160;        <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(6).toInt(), spec.getPrecursors()[res]);</div>
<div class="line"><a name="l01635"></a><span class="lineno"> 1635</span>&#160;</div>
<div class="line"><a name="l01636"></a><span class="lineno"> 1636</span>&#160;        <a class="code" href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">UID</a> prec_id = result.value(7).toInt();</div>
<div class="line"><a name="l01637"></a><span class="lineno"> 1637</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01638"></a><span class="lineno"> 1638</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT PossibleChargeStates FROM DATA_PrecursorPCS WHERE fid_Precursor=&#39;&quot;</span> &lt;&lt; prec_id &lt;&lt; <span class="stringliteral">&quot;&#39; HAVING PossibleChargeStates IS NOT NULL&quot;</span>;</div>
<div class="line"><a name="l01639"></a><span class="lineno"> 1639</span>&#160;        QSqlQuery subresult = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01640"></a><span class="lineno"> 1640</span>&#160;        <span class="keywordflow">while</span> (subresult.next())</div>
<div class="line"><a name="l01641"></a><span class="lineno"> 1641</span>&#160;        {</div>
<div class="line"><a name="l01642"></a><span class="lineno"> 1642</span>&#160;          spec.getPrecursors()[res].getPossibleChargeStates().push_back(subresult.value(0).toInt());</div>
<div class="line"><a name="l01643"></a><span class="lineno"> 1643</span>&#160;        }</div>
<div class="line"><a name="l01644"></a><span class="lineno"> 1644</span>&#160;</div>
<div class="line"><a name="l01645"></a><span class="lineno"> 1645</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01646"></a><span class="lineno"> 1646</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT ActivationMethods-1 FROM DATA_PrecursorAM WHERE fid_Precursor=&#39;&quot;</span> &lt;&lt; prec_id &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01647"></a><span class="lineno"> 1647</span>&#160;        subresult = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01648"></a><span class="lineno"> 1648</span>&#160;        std::set&lt;Precursor::ActivationMethod&gt; tmp_set;</div>
<div class="line"><a name="l01649"></a><span class="lineno"> 1649</span>&#160;        <span class="keywordflow">while</span> (subresult.next())</div>
<div class="line"><a name="l01650"></a><span class="lineno"> 1650</span>&#160;        {</div>
<div class="line"><a name="l01651"></a><span class="lineno"> 1651</span>&#160;          tmp_set.insert((<a class="code" href="classOpenMS_1_1Precursor.html#ade504dd839d796a10e9fc4d840952dc1">Precursor::ActivationMethod</a>)(subresult.value(0).toInt()));</div>
<div class="line"><a name="l01652"></a><span class="lineno"> 1652</span>&#160;        }</div>
<div class="line"><a name="l01653"></a><span class="lineno"> 1653</span>&#160;        spec.getPrecursors()[res].setActivationMethods(tmp_set);</div>
<div class="line"><a name="l01654"></a><span class="lineno"> 1654</span>&#160;        ++res;</div>
<div class="line"><a name="l01655"></a><span class="lineno"> 1655</span>&#160;      }</div>
<div class="line"><a name="l01656"></a><span class="lineno"> 1656</span>&#160;    }</div>
<div class="line"><a name="l01657"></a><span class="lineno"> 1657</span>&#160;</div>
<div class="line"><a name="l01658"></a><span class="lineno"> 1658</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01659"></a><span class="lineno"> 1659</span>&#160;    <span class="comment">//------------------------------ load PRODUCTS ------------------------------------------</span></div>
<div class="line"><a name="l01660"></a><span class="lineno"> 1660</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01661"></a><span class="lineno"> 1661</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01662"></a><span class="lineno"> 1662</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT WindowMz,WindowLow,WindowUp,fid_MetaInfo FROM DATA_Products WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39;&quot;</span>;</div>
<div class="line"><a name="l01663"></a><span class="lineno"> 1663</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01664"></a><span class="lineno"> 1664</span>&#160;    spec.getProducts().resize(result.size());</div>
<div class="line"><a name="l01665"></a><span class="lineno"> 1665</span>&#160;    <a class="code" href="classunsigned_01int.html">UInt</a> res = 0;</div>
<div class="line"><a name="l01666"></a><span class="lineno"> 1666</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01667"></a><span class="lineno"> 1667</span>&#160;    {</div>
<div class="line"><a name="l01668"></a><span class="lineno"> 1668</span>&#160;      spec.getProducts()[res].setMZ(result.value(0).toDouble());</div>
<div class="line"><a name="l01669"></a><span class="lineno"> 1669</span>&#160;      spec.getProducts()[res].setIsolationWindowLowerOffset(result.value(1).toDouble());</div>
<div class="line"><a name="l01670"></a><span class="lineno"> 1670</span>&#160;      spec.getProducts()[res].setIsolationWindowUpperOffset(result.value(2).toDouble());</div>
<div class="line"><a name="l01671"></a><span class="lineno"> 1671</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(3).toInt(), spec.getProducts()[res]);</div>
<div class="line"><a name="l01672"></a><span class="lineno"> 1672</span>&#160;      ++res;</div>
<div class="line"><a name="l01673"></a><span class="lineno"> 1673</span>&#160;    }</div>
<div class="line"><a name="l01674"></a><span class="lineno"> 1674</span>&#160;</div>
<div class="line"><a name="l01675"></a><span class="lineno"> 1675</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01676"></a><span class="lineno"> 1676</span>&#160;    <span class="comment">//--------------------------- load PEAKS/METADATAARRAYS ----------------------------------</span></div>
<div class="line"><a name="l01677"></a><span class="lineno"> 1677</span>&#160;    <span class="comment">//----------------------------------------------------------------------------------------</span></div>
<div class="line"><a name="l01678"></a><span class="lineno"> 1678</span>&#160;</div>
<div class="line"><a name="l01679"></a><span class="lineno"> 1679</span>&#160;    query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01680"></a><span class="lineno"> 1680</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot;SELECT mz,Intensity,fid_MetaInfo,id FROM DATA_Peak WHERE fid_Spectrum=&#39;&quot;</span> &lt;&lt; <span class="keywordtype">id</span> &lt;&lt; <span class="stringliteral">&quot;&#39; &quot;</span>;</div>
<div class="line"><a name="l01681"></a><span class="lineno"> 1681</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a3e0f237b36957f9a2000792d96f058ab">hasMZRange</a>())</div>
<div class="line"><a name="l01682"></a><span class="lineno"> 1682</span>&#160;    {</div>
<div class="line"><a name="l01683"></a><span class="lineno"> 1683</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot; AND mz &gt; &quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a53ddde64ac4058bb889286eb546e0959">getMZRange</a>().<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">minPosition</a>() &lt;&lt; <span class="stringliteral">&quot; AND mz &lt; &quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a53ddde64ac4058bb889286eb546e0959">getMZRange</a>().<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">maxPosition</a>();</div>
<div class="line"><a name="l01684"></a><span class="lineno"> 1684</span>&#160;    }</div>
<div class="line"><a name="l01685"></a><span class="lineno"> 1685</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#ae37c6d9af559f4ff2ce43033481b86d6">hasIntensityRange</a>())</div>
<div class="line"><a name="l01686"></a><span class="lineno"> 1686</span>&#160;    {</div>
<div class="line"><a name="l01687"></a><span class="lineno"> 1687</span>&#160;      query &lt;&lt; <span class="stringliteral">&quot; AND Intensity &gt; &quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a32707decd2e12b46b52b39d96ae62ebd">getIntensityRange</a>().<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">minPosition</a>() &lt;&lt; <span class="stringliteral">&quot; AND Intensity &lt; &quot;</span> &lt;&lt; <a class="code" href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">options_</a>.<a class="code" href="classOpenMS_1_1PeakFileOptions.html#a32707decd2e12b46b52b39d96ae62ebd">getIntensityRange</a>().<a class="code" href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">maxPosition</a>();</div>
<div class="line"><a name="l01688"></a><span class="lineno"> 1688</span>&#160;    }</div>
<div class="line"><a name="l01689"></a><span class="lineno"> 1689</span>&#160;    query &lt;&lt; <span class="stringliteral">&quot; ORDER BY mz ASC&quot;</span>;</div>
<div class="line"><a name="l01690"></a><span class="lineno"> 1690</span>&#160;    result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str());</div>
<div class="line"><a name="l01691"></a><span class="lineno"> 1691</span>&#160;</div>
<div class="line"><a name="l01692"></a><span class="lineno"> 1692</span>&#160;    <span class="keywordflow">while</span> (result.next())</div>
<div class="line"><a name="l01693"></a><span class="lineno"> 1693</span>&#160;    {</div>
<div class="line"><a name="l01694"></a><span class="lineno"> 1694</span>&#160;      <span class="keyword">typename</span> <a class="code" href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">SpectrumType::PeakType</a> p;</div>
<div class="line"><a name="l01695"></a><span class="lineno"> 1695</span>&#160;      p.<a class="code" href="classOpenMS_1_1Peak2D.html#abbdecccbbcf763c6c5eae3b7c3cb915e">setPosition</a>(result.value(0).toDouble());</div>
<div class="line"><a name="l01696"></a><span class="lineno"> 1696</span>&#160;      p.setIntensity(result.value(1).toDouble());</div>
<div class="line"><a name="l01697"></a><span class="lineno"> 1697</span>&#160;      <a class="code" href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">loadMetaInfo_</a>(result.value(2).toInt(), p);</div>
<div class="line"><a name="l01698"></a><span class="lineno"> 1698</span>&#160;      spec.push_back(p);</div>
<div class="line"><a name="l01699"></a><span class="lineno"> 1699</span>&#160;      <span class="keywordflow">for</span> (<span class="keyword">typename</span> SpectrumType::FloatDataArrays::iterator mdarrays_it = spec.getFloatDataArrays().begin(); mdarrays_it != spec.getFloatDataArrays().end(); mdarrays_it++)</div>
<div class="line"><a name="l01700"></a><span class="lineno"> 1700</span>&#160;      {</div>
<div class="line"><a name="l01701"></a><span class="lineno"> 1701</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01702"></a><span class="lineno"> 1702</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT id FROM META_MetaInfoDescription WHERE Name=&#39;&quot;</span>;</div>
<div class="line"><a name="l01703"></a><span class="lineno"> 1703</span>&#160;        query &lt;&lt; mdarrays_it-&gt;getName() &lt;&lt; <span class="stringliteral">&quot;&#39; AND fid_Spectrum=&quot;</span> &lt;&lt; id;</div>
<div class="line"><a name="l01704"></a><span class="lineno"> 1704</span>&#160;        sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01705"></a><span class="lineno"> 1705</span>&#160;        query.str(<span class="stringliteral">&quot;&quot;</span>);</div>
<div class="line"><a name="l01706"></a><span class="lineno"> 1706</span>&#160;        query &lt;&lt; <span class="stringliteral">&quot;SELECT Value FROM DATA_PeakMetaData WHERE fid_Peak=&quot;</span>;</div>
<div class="line"><a name="l01707"></a><span class="lineno"> 1707</span>&#160;        query &lt;&lt; result.value(3).toInt() &lt;&lt; <span class="stringliteral">&quot; AND fid_MetaInfoDescription=&quot;</span> &lt;&lt; sub_result.value(0).toInt();</div>
<div class="line"><a name="l01708"></a><span class="lineno"> 1708</span>&#160;        sub_result = <a class="code" href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">db_con_</a>.<a class="code" href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">executeQuery</a>(query.str(), <span class="keyword">true</span>);</div>
<div class="line"><a name="l01709"></a><span class="lineno"> 1709</span>&#160;        mdarrays_it-&gt;push_back(sub_result.value(0).toDouble());</div>
<div class="line"><a name="l01710"></a><span class="lineno"> 1710</span>&#160;      }</div>
<div class="line"><a name="l01711"></a><span class="lineno"> 1711</span>&#160;    }</div>
<div class="line"><a name="l01712"></a><span class="lineno"> 1712</span>&#160;</div>
<div class="line"><a name="l01713"></a><span class="lineno"> 1713</span>&#160;    <span class="comment">//id</span></div>
<div class="line"><a name="l01714"></a><span class="lineno"> 1714</span>&#160;    spec.setPersistenceId(<span class="keywordtype">id</span>);</div>
<div class="line"><a name="l01715"></a><span class="lineno"> 1715</span>&#160;  }</div>
<div class="line"><a name="l01716"></a><span class="lineno"> 1716</span>&#160;</div>
<div class="line"><a name="l01717"></a><span class="lineno"> 1717</span>&#160;}</div>
<div class="line"><a name="l01718"></a><span class="lineno"> 1718</span>&#160;</div>
<div class="line"><a name="l01719"></a><span class="lineno"> 1719</span>&#160;<span class="preprocessor">#endif</span></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html">OpenMS::ProteinIdentification</a></div><div class="ttdoc">Representation of a protein identification run. </div><div class="ttdef"><b>Definition:</b> ProteinIdentification.h:61</div></div>
<div class="ttc" id="PeakFileOptions_8h_html"><div class="ttname"><a href="PeakFileOptions_8h.html">PeakFileOptions.h</a></div></div>
<div class="ttc" id="classunsigned_01int_html"><div class="ttname"><a href="classunsigned_01int.html">unsigned int</a></div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html">OpenMS::DataProcessing</a></div><div class="ttdoc">Descripton of the applied preprocessing steps. </div><div class="ttdef"><b>Definition:</b> DataProcessing.h:51</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_a935d3c82c309ed3c0ed94d5edb12ce08"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#a935d3c82c309ed3c0ed94d5edb12ce08">OpenMS::Instrument::getCustomizations</a></div><div class="ttdeci">const String &amp; getCustomizations() const </div><div class="ttdoc">returns a description of customizations </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_a15a14866884b8b4dea8950b2151a0963"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#a15a14866884b8b4dea8950b2151a0963">OpenMS::ProteinIdentification::setSearchEngine</a></div><div class="ttdeci">void setSearchEngine(const String &amp;search_engine)</div><div class="ttdoc">Sets the search engine type. </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_a654a0b5941d937e303c64bc9e732baec"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#a654a0b5941d937e303c64bc9e732baec">OpenMS::DBAdapter::options_</a></div><div class="ttdeci">PeakFileOptions options_</div><div class="ttdef"><b>Definition:</b> DBAdapter.h:167</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html"><div class="ttname"><a href="classOpenMS_1_1Instrument.html">OpenMS::Instrument</a></div><div class="ttdoc">Description of a MS instrument. </div><div class="ttdef"><b>Definition:</b> Instrument.h:64</div></div>
<div class="ttc" id="structOpenMS_1_1ProteinIdentification_1_1SearchParameters_html_ae525bb5a71aa3ae9d811588db4652c00"><div class="ttname"><a href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html#ae525bb5a71aa3ae9d811588db4652c00">OpenMS::ProteinIdentification::SearchParameters::db</a></div><div class="ttdeci">String db</div><div class="ttdoc">The used database. </div><div class="ttdef"><b>Definition:</b> ProteinIdentification.h:118</div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_a3e0f237b36957f9a2000792d96f058ab"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#a3e0f237b36957f9a2000792d96f058ab">OpenMS::PeakFileOptions::hasMZRange</a></div><div class="ttdeci">bool hasMZRange() const </div><div class="ttdoc">returns true if an MZ range has been set </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_ad4d077939d4a1b5a633d79c138e364df"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#ad4d077939d4a1b5a633d79c138e364df">OpenMS::DBAdapter::loadSpectrum</a></div><div class="ttdeci">void loadSpectrum(UID id, SpectrumType &amp;spec)</div><div class="ttdoc">Reads a MSSpectrum. </div><div class="ttdef"><b>Definition:</b> DBAdapter.h:1420</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_a219795d06917877c7d946a00f23e2319"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#a219795d06917877c7d946a00f23e2319">OpenMS::Instrument::getSoftware</a></div><div class="ttdeci">const Software &amp; getSoftware() const </div><div class="ttdoc">returns a const reference to the instrument software </div></div>
<div class="ttc" id="classOpenMS_1_1DBConnection_html_a79c8b041cb82637e2683cf6486081f57"><div class="ttname"><a href="classOpenMS_1_1DBConnection.html#a79c8b041cb82637e2683cf6486081f57">OpenMS::DBConnection::executeQuery</a></div><div class="ttdeci">QSqlQuery executeQuery(const String &amp;query, bool first=false)</div><div class="ttdoc">Executes a query and returns the result. </div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html_a89af53dd08978920d0acde6115b8b485"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html#a89af53dd08978920d0acde6115b8b485">OpenMS::IonDetector::setAcquisitionMode</a></div><div class="ttdeci">void setAcquisitionMode(AcquisitionMode acquisition_mode)</div><div class="ttdoc">sets the acquisition mode </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html">OpenMS::InstrumentSettings</a></div><div class="ttdoc">Description of the settings a MS Instrument was run with. </div><div class="ttdef"><b>Definition:</b> InstrumentSettings.h:48</div></div>
<div class="ttc" id="classOpenMS_1_1HPLC_html_a7203e7128a52306e685cb04f0ddc756c"><div class="ttname"><a href="classOpenMS_1_1HPLC.html#a7203e7128a52306e685cb04f0ddc756c">OpenMS::HPLC::getInstrument</a></div><div class="ttdeci">const String &amp; getInstrument() const </div><div class="ttdoc">returns a const reference to the instument name </div></div>
<div class="ttc" id="classOpenMS_1_1String_html"><div class="ttname"><a href="classOpenMS_1_1String.html">OpenMS::String</a></div><div class="ttdoc">A more convenient string class. </div><div class="ttdef"><b>Definition:</b> String.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1Precursor_html"><div class="ttname"><a href="classOpenMS_1_1Precursor.html">OpenMS::Precursor</a></div><div class="ttdoc">Precursor meta information. </div><div class="ttdef"><b>Definition:</b> Precursor.h:56</div></div>
<div class="ttc" id="classOpenMS_1_1PeptideHit_html_a2e9b7c12f6d8fa7415aa0aca69208f42"><div class="ttname"><a href="classOpenMS_1_1PeptideHit.html#a2e9b7c12f6d8fa7415aa0aca69208f42">OpenMS::PeptideHit::setScore</a></div><div class="ttdeci">void setScore(DoubleReal score)</div><div class="ttdoc">sets the score of the peptide hit </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_a86f5c6d7c17c3aa94ec734e2a4fb50fa"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#a86f5c6d7c17c3aa94ec734e2a4fb50fa">OpenMS::ProteinIdentification::setHits</a></div><div class="ttdeci">void setHits(const std::vector&lt; ProteinHit &gt; &amp;hits)</div><div class="ttdoc">Sets the protein hits. </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinHit_html_ae81d824b06eb6152f84276cdec74ce8b"><div class="ttname"><a href="classOpenMS_1_1ProteinHit.html#ae81d824b06eb6152f84276cdec74ce8b">OpenMS::ProteinHit::setScore</a></div><div class="ttdeci">void setScore(const DoubleReal score)</div><div class="ttdoc">sets the score of the protein hit </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_af52a951de336423a295e55e03fac07f5"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#af52a951de336423a295e55e03fac07f5">OpenMS::DBAdapter::loadMetaInfo_</a></div><div class="ttdeci">void loadMetaInfo_(UID id, MetaInfoInterface &amp;info)</div><div class="ttdoc">Loads MetaInfo data from database. </div></div>
<div class="ttc" id="classOpenMS_1_1ContactPerson_html_ad7d93df87f74de90e5d0870ebddfd6b5"><div class="ttname"><a href="classOpenMS_1_1ContactPerson.html#ad7d93df87f74de90e5d0870ebddfd6b5">OpenMS::ContactPerson::setContactInfo</a></div><div class="ttdeci">void setContactInfo(const String &amp;contact_info)</div><div class="ttdoc">sets miscellaneous info about the contact person </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a71de61b67afb629b55d610f58bebb554"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a71de61b67afb629b55d610f58bebb554">OpenMS::InstrumentSettings::setZoomScan</a></div><div class="ttdeci">void setZoomScan(bool zoom_scan)</div><div class="ttdoc">sets if this scan is a zoom (enhanced resolution) scan </div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_ae37c6d9af559f4ff2ce43033481b86d6"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#ae37c6d9af559f4ff2ce43033481b86d6">OpenMS::PeakFileOptions::hasIntensityRange</a></div><div class="ttdeci">bool hasIntensityRange() const </div><div class="ttdoc">returns true if an intensity range has been set </div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html_ab0301b5c82d74538dfffc98406254e11"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html#ab0301b5c82d74538dfffc98406254e11">OpenMS::IonDetector::AcquisitionMode</a></div><div class="ttdeci">AcquisitionMode</div><div class="ttdoc">Acquisition mode. </div><div class="ttdef"><b>Definition:</b> IonDetector.h:82</div></div>
<div class="ttc" id="classOpenMS_1_1DateTime_html_afb2353cf7399e53aa4b59ce122c6fc49"><div class="ttname"><a href="classOpenMS_1_1DateTime.html#afb2353cf7399e53aa4b59ce122c6fc49">OpenMS::DateTime::set</a></div><div class="ttdeci">void set(UInt month, UInt day, UInt year, UInt hour, UInt minute, UInt second)</div><div class="ttdoc">sets data from six integers </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinHit_html_a2b8bf5f3febdb76461bdea9ff39d6b6d"><div class="ttname"><a href="classOpenMS_1_1ProteinHit.html#a2b8bf5f3febdb76461bdea9ff39d6b6d">OpenMS::ProteinHit::setSequence</a></div><div class="ttdeci">void setSequence(const String &amp;sequence)</div><div class="ttdoc">sets the protein sequence </div></div>
<div class="ttc" id="classOpenMS_1_1ContactPerson_html_ae5056c1e33cb9bbea429b446ef0d41a6"><div class="ttname"><a href="classOpenMS_1_1ContactPerson.html#ae5056c1e33cb9bbea429b446ef0d41a6">OpenMS::ContactPerson::setLastName</a></div><div class="ttdeci">void setLastName(const String &amp;name)</div><div class="ttdoc">sets the last name of the person </div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_ad34bb2f8f677e2f6c6c505d11754a765"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#ad34bb2f8f677e2f6c6c505d11754a765">OpenMS::DataProcessing::getProcessingActions</a></div><div class="ttdeci">const std::set&lt; ProcessingAction &gt; &amp; getProcessingActions() const </div><div class="ttdoc">returns a const reference to the applied processing actions </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_ae38edd7365e0241ed6b46b81ea5fe6ee"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#ae38edd7365e0241ed6b46b81ea5fe6ee">OpenMS::DBAdapter::storeSample_</a></div><div class="ttdeci">UID storeSample_(const Sample &amp;sample, UID exp_id, UID parent_id)</div><div class="ttdoc">Stores, updates or deletes sample information. </div></div>
<div class="ttc" id="classOpenMS_1_1SpectrumSettings_html_ab7b974cef152e339967fce62f49de0d9"><div class="ttname"><a href="classOpenMS_1_1SpectrumSettings.html#ab7b974cef152e339967fce62f49de0d9">OpenMS::SpectrumSettings::SpectrumType</a></div><div class="ttdeci">SpectrumType</div><div class="ttdoc">Spectrum peak type. </div><div class="ttdef"><b>Definition:</b> SpectrumSettings.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1AcquisitionInfo_html"><div class="ttname"><a href="classOpenMS_1_1AcquisitionInfo.html">OpenMS::AcquisitionInfo</a></div><div class="ttdoc">Description of the combination of raw data to a single spectrum. </div><div class="ttdef"><b>Definition:</b> AcquisitionInfo.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_a32707decd2e12b46b52b39d96ae62ebd"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#a32707decd2e12b46b52b39d96ae62ebd">OpenMS::PeakFileOptions::getIntensityRange</a></div><div class="ttdeci">const DRange&lt; 1 &gt; &amp; getIntensityRange() const </div><div class="ttdoc">returns the intensity range </div></div>
<div class="ttc" id="classOpenMS_1_1ContactPerson_html"><div class="ttname"><a href="classOpenMS_1_1ContactPerson.html">OpenMS::ContactPerson</a></div><div class="ttdoc">Contact person information. </div><div class="ttdef"><b>Definition:</b> ContactPerson.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html_a5b7d6f465d2b2dade6c296d9aa439b9c"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html#a5b7d6f465d2b2dade6c296d9aa439b9c">OpenMS::IonDetector::setOrder</a></div><div class="ttdeci">void setOrder(Int order)</div><div class="ttdoc">sets the order </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_ab478332cfcbe095f4ccce9381d7af978"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#ab478332cfcbe095f4ccce9381d7af978">OpenMS::MassAnalyzer::setScanRate</a></div><div class="ttdeci">void setScanRate(DoubleReal scan_rate)</div><div class="ttdoc">sets the scan rate (in s) </div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_a263b56e8754e50f0aa55595b7c76d387"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#a263b56e8754e50f0aa55595b7c76d387">OpenMS::PeakFileOptions::hasMSLevels</a></div><div class="ttdeci">bool hasMSLevels() const </div><div class="ttdoc">returns true, if MS levels have been set </div></div>
<div class="ttc" id="classOpenMS_1_1HPLC_html"><div class="ttname"><a href="classOpenMS_1_1HPLC.html">OpenMS::HPLC</a></div><div class="ttdoc">Representation of a HPLC experiment. </div><div class="ttdef"><b>Definition:</b> HPLC.h:51</div></div>
<div class="ttc" id="RichPeak1D_8h_html"><div class="ttname"><a href="RichPeak1D_8h.html">RichPeak1D.h</a></div></div>
<div class="ttc" id="structOpenMS_1_1ScanWindow_html_aed18ab075b5c0317ae32335a57f899e8"><div class="ttname"><a href="structOpenMS_1_1ScanWindow.html#aed18ab075b5c0317ae32335a57f899e8">OpenMS::ScanWindow::end</a></div><div class="ttdeci">DoubleReal end</div><div class="ttdoc">End of the window. </div><div class="ttdef"><b>Definition:</b> ScanWindow.h:64</div></div>
<div class="ttc" id="namespaceOpenMS_html_a013338b7bdbb5c3b4c78666656070e23"><div class="ttname"><a href="namespaceOpenMS.html#a013338b7bdbb5c3b4c78666656070e23">OpenMS::PeakType</a></div><div class="ttdeci">Peak2D PeakType</div><div class="ttdef"><b>Definition:</b> MassTrace.h:49</div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_a2c04b86565fbb199cbb2209a4588f4de"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#a2c04b86565fbb199cbb2209a4588f4de">OpenMS::PeakFileOptions::hasRTRange</a></div><div class="ttdeci">bool hasRTRange() const </div><div class="ttdoc">returns true if an RT range has been set </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_ae5412841952d50bcec24df4868e86e67"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#ae5412841952d50bcec24df4868e86e67">OpenMS::InstrumentSettings::setScanMode</a></div><div class="ttdeci">void setScanMode(ScanMode scan_mode)</div><div class="ttdoc">sets the scan mode </div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_a9843017b53501a87d8a747895c4cf073"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#a9843017b53501a87d8a747895c4cf073">OpenMS::PeakFileOptions::getMSLevels</a></div><div class="ttdeci">const std::vector&lt; Int &gt; &amp; getMSLevels() const </div><div class="ttdoc">returns the set MS levels </div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_a1a127ee8460671ffdc8de43f82f7de47"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#a1a127ee8460671ffdc8de43f82f7de47">OpenMS::Instrument::getIonOptics</a></div><div class="ttdeci">IonOpticsType getIonOptics() const </div><div class="ttdoc">returns the ion optics type </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a205c68b92698410dc6142632417ae0c8"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a205c68b92698410dc6142632417ae0c8">OpenMS::InstrumentSettings::setPolarity</a></div><div class="ttdeci">void setPolarity(IonSource::Polarity polarity)</div><div class="ttdoc">sets the polarity </div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a1d9f4ba1e172a487acb87c951b40b31e"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a1d9f4ba1e172a487acb87c951b40b31e">OpenMS::IonSource::setPolarity</a></div><div class="ttdeci">void setPolarity(Polarity polarity)</div><div class="ttdoc">sets the ionization mode </div></div>
<div class="ttc" id="classOpenMS_1_1SourceFile_html"><div class="ttname"><a href="classOpenMS_1_1SourceFile.html">OpenMS::SourceFile</a></div><div class="ttdoc">Description of a file location, used to store the origin of (meta) data. </div><div class="ttdef"><b>Definition:</b> SourceFile.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_af4b42c1902b00befb435be5e0e2239ee"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#af4b42c1902b00befb435be5e0e2239ee">OpenMS::MassAnalyzer::setScanDirection</a></div><div class="ttdeci">void setScanDirection(ScanDirection scan_direction)</div><div class="ttdoc">sets the direction of scanning </div></div>
<div class="ttc" id="structOpenMS_1_1ScanWindow_html_aea3ca80628c489842c52a61e195dd047"><div class="ttname"><a href="structOpenMS_1_1ScanWindow.html#aea3ca80628c489842c52a61e195dd047">OpenMS::ScanWindow::begin</a></div><div class="ttdeci">DoubleReal begin</div><div class="ttdoc">Begin of the window. </div><div class="ttdef"><b>Definition:</b> ScanWindow.h:62</div></div>
<div class="ttc" id="classOpenMS_1_1Software_html"><div class="ttname"><a href="classOpenMS_1_1Software.html">OpenMS::Software</a></div><div class="ttdoc">Description of the software used for processing. </div><div class="ttdef"><b>Definition:</b> Software.h:49</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_af4814792a42869dd07f2a81726b38402"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#af4814792a42869dd07f2a81726b38402">OpenMS::MassAnalyzer::ScanDirection</a></div><div class="ttdeci">ScanDirection</div><div class="ttdoc">direction of scanning </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:103</div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_af790bad53b9ea670e78d4d8f72fbd04c"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#af790bad53b9ea670e78d4d8f72fbd04c">OpenMS::DBAdapter::loadFile_</a></div><div class="ttdeci">void loadFile_(UID id, SourceFile &amp;file)</div><div class="ttdoc">Loads file information. </div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html_a608e58a2f9fb7e497f91662a6e9ae4cc"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html#a608e58a2f9fb7e497f91662a6e9ae4cc">OpenMS::IonDetector::setType</a></div><div class="ttdeci">void setType(Type type)</div><div class="ttdoc">sets the detector type </div></div>
<div class="ttc" id="classOpenMS_1_1RichPeak1D_html"><div class="ttname"><a href="classOpenMS_1_1RichPeak1D.html">OpenMS::RichPeak1D</a></div><div class="ttdoc">A 1-dimensional raw data point or peak mith meta information. </div><div class="ttdef"><b>Definition:</b> RichPeak1D.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1PeptideHit_html_aa50c3e3233976cef5c82cd6eed3f1768"><div class="ttname"><a href="classOpenMS_1_1PeptideHit.html#aa50c3e3233976cef5c82cd6eed3f1768">OpenMS::PeptideHit::setAABefore</a></div><div class="ttdeci">void setAABefore(char acid)</div><div class="ttdoc">sets the amino acid before the sequence </div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a08b8f804d8602840858ce2d533db675f"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a08b8f804d8602840858ce2d533db675f">OpenMS::IonSource::InletType</a></div><div class="ttdeci">InletType</div><div class="ttdoc">inlet type </div><div class="ttdef"><b>Definition:</b> IonSource.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_afb0f58ddeea0e6f58da132fae1421563"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#afb0f58ddeea0e6f58da132fae1421563">OpenMS::ProteinIdentification::setSearchParameters</a></div><div class="ttdeci">void setSearchParameters(const SearchParameters &amp;search_parameters)</div><div class="ttdoc">Sets the search parameters. </div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html_a1d1cfd8ffb84e947f82999c682b666a7"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html#a1d1cfd8ffb84e947f82999c682b666a7">OpenMS::IonDetector::Type</a></div><div class="ttdeci">Type</div><div class="ttdoc">Detector type. </div><div class="ttdef"><b>Definition:</b> IonDetector.h:52</div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_af675d68d979fb34924c4b6a8b3738b92"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#af675d68d979fb34924c4b6a8b3738b92">OpenMS::DBAdapter::checkDBVersion</a></div><div class="ttdeci">bool checkDBVersion(bool warning)</div><div class="ttdoc">Returns true if the DB is up-to-date (Checks the version in ADMIN_Version table). ...</div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_ad1664f90cd894f0713284a213733afb8"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#ad1664f90cd894f0713284a213733afb8">OpenMS::DBAdapter::loadExperiment</a></div><div class="ttdeci">void loadExperiment(UID id, ExperimentType &amp;exp)</div><div class="ttdoc">Reads a MSExperiment. </div><div class="ttdef"><b>Definition:</b> DBAdapter.h:1070</div></div>
<div class="ttc" id="classOpenMS_1_1HPLC_html_a6fe2c9238504babb49dce178380c69e9"><div class="ttname"><a href="classOpenMS_1_1HPLC.html#a6fe2c9238504babb49dce178380c69e9">OpenMS::HPLC::getFlux</a></div><div class="ttdeci">UInt getFlux() const </div><div class="ttdoc">returns the flux (in microliter/sec) </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a5b7d6f465d2b2dade6c296d9aa439b9c"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a5b7d6f465d2b2dade6c296d9aa439b9c">OpenMS::MassAnalyzer::setOrder</a></div><div class="ttdeci">void setOrder(Int order)</div><div class="ttdoc">sets the order </div></div>
<div class="ttc" id="classOpenMS_1_1Gradient_html_ae5e41d61e77f329411cf14d39e2a95b7"><div class="ttname"><a href="classOpenMS_1_1Gradient.html#ae5e41d61e77f329411cf14d39e2a95b7">OpenMS::Gradient::getPercentages</a></div><div class="ttdeci">const std::vector&lt; std::vector&lt; UInt &gt; &gt; &amp; getPercentages() const </div><div class="ttdoc">returns a const reference to the percentages </div></div>
<div class="ttc" id="structOpenMS_1_1ProteinIdentification_1_1SearchParameters_html"><div class="ttname"><a href="structOpenMS_1_1ProteinIdentification_1_1SearchParameters.html">OpenMS::ProteinIdentification::SearchParameters</a></div><div class="ttdoc">Search parameters of the DB search. </div><div class="ttdef"><b>Definition:</b> ProteinIdentification.h:115</div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_a2b12b0259c1b9a843a11013ea4097899"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#a2b12b0259c1b9a843a11013ea4097899">OpenMS::ProteinIdentification::setHigherScoreBetter</a></div><div class="ttdeci">void setHigherScoreBetter(bool higher_is_better)</div><div class="ttdoc">Sets the orientation of the score (is higher better?) </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a34bdf8df14c74a4beb0f343aa8141e60"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a34bdf8df14c74a4beb0f343aa8141e60">OpenMS::MassAnalyzer::ResolutionType</a></div><div class="ttdeci">ResolutionType</div><div class="ttdoc">Resolution type. </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:92</div></div>
<div class="ttc" id="classOpenMS_1_1HPLC_html_aab4a6ffc575f5134842b0275bce5de7a"><div class="ttname"><a href="classOpenMS_1_1HPLC.html#aab4a6ffc575f5134842b0275bce5de7a">OpenMS::HPLC::getComment</a></div><div class="ttdeci">String getComment() const </div><div class="ttdoc">returns the comments </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_ac594c8ab5a3032ac493b375c7175f533"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#ac594c8ab5a3032ac493b375c7175f533">OpenMS::DBAdapter::storeExperiment</a></div><div class="ttdeci">void storeExperiment(ExperimentType &amp;exp)</div><div class="ttdoc">Stores a MSExperiment. </div><div class="ttdef"><b>Definition:</b> DBAdapter.h:174</div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_ac923559a725398bcd743ea2276e05d46"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#ac923559a725398bcd743ea2276e05d46">OpenMS::DBAdapter::storeMetaInfo_</a></div><div class="ttdeci">UID storeMetaInfo_(const String &amp;parent_table, UID parent_id, const MetaInfoInterface &amp;info)</div><div class="ttdoc">Stores, updates or deletes MetaInfo data. </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a3409c914db15bbb4696822e623a69ef1"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a3409c914db15bbb4696822e623a69ef1">OpenMS::InstrumentSettings::getZoomScan</a></div><div class="ttdeci">bool getZoomScan() const </div><div class="ttdoc">return if this scan is a zoom (enhanced resolution) scan </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a541856069e66db2a4cab95d7f1993dc9"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a541856069e66db2a4cab95d7f1993dc9">OpenMS::InstrumentSettings::getScanMode</a></div><div class="ttdeci">ScanMode getScanMode() const </div><div class="ttdoc">returns the scan mode </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a248c39266a3935b06b981254aa02487a"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a248c39266a3935b06b981254aa02487a">OpenMS::MassAnalyzer::setResolutionMethod</a></div><div class="ttdeci">void setResolutionMethod(ResolutionMethod resolution_method)</div><div class="ttdoc">sets the method used for determination of the resolution </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a48bdc5161d32fad1317ecc6d1a3fc974"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a48bdc5161d32fad1317ecc6d1a3fc974">OpenMS::MassAnalyzer::setAccuracy</a></div><div class="ttdeci">void setAccuracy(DoubleReal accuracy)</div><div class="ttdoc">sets the accuracy i.e. how much the theoretical mass may differ from the measured mass (in ppm) ...</div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_a5431b65220b7ad71b5e8768876ee3e53"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#a5431b65220b7ad71b5e8768876ee3e53">OpenMS::ProteinIdentification::PeakMassType</a></div><div class="ttdeci">PeakMassType</div><div class="ttdoc">Peak mass type. </div><div class="ttdef"><b>Definition:</b> ProteinIdentification.h:91</div></div>
<div class="ttc" id="classOpenMS_1_1PeptideIdentification_html_a8abccfc6fb1eceb2a2c43f17055a9360"><div class="ttname"><a href="classOpenMS_1_1PeptideIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">OpenMS::PeptideIdentification::setSignificanceThreshold</a></div><div class="ttdeci">void setSignificanceThreshold(DoubleReal value)</div><div class="ttdoc">setting of the peptide significance threshold value </div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html_ab9933015a94bdd9827b4a417232b82f2"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html#ab9933015a94bdd9827b4a417232b82f2">OpenMS::IonDetector::setADCSamplingFrequency</a></div><div class="ttdeci">void setADCSamplingFrequency(DoubleReal ADC_sampling_frequency)</div><div class="ttdoc">sets the analog-to-digital converter sampling frequency (in Hz) </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a11053909f1f8edf7b9ccc41c1417ecf6"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a11053909f1f8edf7b9ccc41c1417ecf6">OpenMS::MassAnalyzer::ResolutionMethod</a></div><div class="ttdeci">ResolutionMethod</div><div class="ttdoc">resolution method </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:80</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_a1429c5f03fd5bf24ca23b2666cd30422"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#a1429c5f03fd5bf24ca23b2666cd30422">OpenMS::DataProcessing::setCompletionTime</a></div><div class="ttdeci">void setCompletionTime(const DateTime &amp;completion_time)</div><div class="ttdoc">sets the time of completition taking a DateTime object </div></div>
<div class="ttc" id="MSExperiment_8h_html"><div class="ttname"><a href="MSExperiment_8h.html">MSExperiment.h</a></div></div>
<div class="ttc" id="classOpenMS_1_1String_html_a28f849a39a6e1a02a891d9e7e7f6eb79"><div class="ttname"><a href="classOpenMS_1_1String.html#a28f849a39a6e1a02a891d9e7e7f6eb79">OpenMS::String::toInt</a></div><div class="ttdeci">Int toInt() const </div><div class="ttdoc">Conversion to int. </div></div>
<div class="ttc" id="classOpenMS_1_1PeptideIdentification_html_a98447dc4641b69db36fcc5087cfe73e6"><div class="ttname"><a href="classOpenMS_1_1PeptideIdentification.html#a98447dc4641b69db36fcc5087cfe73e6">OpenMS::PeptideIdentification::setHigherScoreBetter</a></div><div class="ttdeci">void setHigherScoreBetter(bool value)</div><div class="ttdoc">sets the peptide score orientation </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_ac1976fd756a09ae4e26fe6b32fcb396c"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#ac1976fd756a09ae4e26fe6b32fcb396c">OpenMS::ProteinIdentification::DigestionEnzyme</a></div><div class="ttdeci">DigestionEnzyme</div><div class="ttdef"><b>Definition:</b> ProteinIdentification.h:101</div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a021f6acb8bd3a02278cc50f11c489a12"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a021f6acb8bd3a02278cc50f11c489a12">OpenMS::InstrumentSettings::getScanWindows</a></div><div class="ttdeci">const std::vector&lt; ScanWindow &gt; &amp; getScanWindows() const </div><div class="ttdoc">returns a const reference to the m/z scan windows </div></div>
<div class="ttc" id="classOpenMS_1_1PeptideHit_html_aca40a4630f5f8a0568899b74a62dcd4b"><div class="ttname"><a href="classOpenMS_1_1PeptideHit.html#aca40a4630f5f8a0568899b74a62dcd4b">OpenMS::PeptideHit::setCharge</a></div><div class="ttdeci">void setCharge(Int charge)</div><div class="ttdoc">sets the charge of the peptide </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a113d974e38726fb862cd6765a3e04e14"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a113d974e38726fb862cd6765a3e04e14">OpenMS::MassAnalyzer::setMagneticFieldStrength</a></div><div class="ttdeci">void setMagneticFieldStrength(DoubleReal magnetic_field_strength)</div><div class="ttdoc">sets the strength of the magnetic field (in T) </div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_a5cb3d70f7095ec7538835c895fac78d7"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#a5cb3d70f7095ec7538835c895fac78d7">OpenMS::PeakFileOptions::getRTRange</a></div><div class="ttdeci">const DRange&lt; 1 &gt; &amp; getRTRange() const </div><div class="ttdoc">returns the RT range </div></div>
<div class="ttc" id="classOpenMS_1_1ContactPerson_html_a74399439996aca9fc1c551081a556294"><div class="ttname"><a href="classOpenMS_1_1ContactPerson.html#a74399439996aca9fc1c551081a556294">OpenMS::ContactPerson::setEmail</a></div><div class="ttdeci">void setEmail(const String &amp;email)</div><div class="ttdoc">sets the email address </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_ad5864c079da5a9743ed735d7457263f9"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#ad5864c079da5a9743ed735d7457263f9">OpenMS::DBAdapter::loadSample_</a></div><div class="ttdeci">void loadSample_(UID id, Sample &amp;sample)</div><div class="ttdoc">Loads sample information. </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_aa6c13dd3a27b1c13f4e240d6f4f8c4d3"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">OpenMS::MassAnalyzer::setResolution</a></div><div class="ttdeci">void setResolution(DoubleReal resolution)</div><div class="ttdoc">sets the resolution </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_aa2b2d9eddcd952d83d19da4e189fba69"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#aa2b2d9eddcd952d83d19da4e189fba69">OpenMS::DBAdapter::db_con_</a></div><div class="ttdeci">DBConnection &amp; db_con_</div><div class="ttdoc">Reference to the DB connection handed over in the constructor. </div><div class="ttdef"><b>Definition:</b> DBAdapter.h:108</div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_af8d7ce8405ff2af127df2f9a1234f3b9"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#af8d7ce8405ff2af127df2f9a1234f3b9">OpenMS::DataProcessing::ProcessingAction</a></div><div class="ttdeci">ProcessingAction</div><div class="ttdef"><b>Definition:</b> DataProcessing.h:58</div></div>
<div class="ttc" id="classOpenMS_1_1Gradient_html"><div class="ttname"><a href="classOpenMS_1_1Gradient.html">OpenMS::Gradient</a></div><div class="ttdoc">Representation of a HPLC gradient. </div><div class="ttdef"><b>Definition:</b> Gradient.h:53</div></div>
<div class="ttc" id="classOpenMS_1_1HPLC_html_aa2cdf2fabbf0210a4477b9c8fa746068"><div class="ttname"><a href="classOpenMS_1_1HPLC.html#aa2cdf2fabbf0210a4477b9c8fa746068">OpenMS::HPLC::getTemperature</a></div><div class="ttdeci">Int getTemperature() const </div><div class="ttdoc">returns the temperature (in degree C) </div></div>
<div class="ttc" id="classOpenMS_1_1DBConnection_html_aa34d4f9040329228d28e28314dd1c801"><div class="ttname"><a href="classOpenMS_1_1DBConnection.html#aa34d4f9040329228d28e28314dd1c801">OpenMS::DBConnection::getAutoId</a></div><div class="ttdeci">UInt getAutoId()</div><div class="ttdoc">Returns the last auto_increment ID of the SQL database. </div></div>
<div class="ttc" id="classOpenMS_1_1PeptideHit_html"><div class="ttname"><a href="classOpenMS_1_1PeptideHit.html">OpenMS::PeptideHit</a></div><div class="ttdoc">Representation of a peptide hit. </div><div class="ttdef"><b>Definition:</b> PeptideHit.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_a307ba40c92040f24cb0b496fb5b58b88"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#a307ba40c92040f24cb0b496fb5b58b88">OpenMS::Instrument::getModel</a></div><div class="ttdeci">const String &amp; getModel() const </div><div class="ttdoc">returns the instrument model </div></div>
<div class="ttc" id="classOpenMS_1_1DataProcessing_html_a8ff34073a7ed3fabe3f5deff96c0282e"><div class="ttname"><a href="classOpenMS_1_1DataProcessing.html#a8ff34073a7ed3fabe3f5deff96c0282e">OpenMS::DataProcessing::setSoftware</a></div><div class="ttdeci">void setSoftware(const Software &amp;software)</div><div class="ttdoc">sets the software used for processing </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_aef26ae8a53a25dd2da573e980e8a5568"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#aef26ae8a53a25dd2da573e980e8a5568">OpenMS::MassAnalyzer::setType</a></div><div class="ttdeci">void setType(AnalyzerType type)</div><div class="ttdoc">sets the analyzer type </div></div>
<div class="ttc" id="classOpenMS_1_1Peak1D_html"><div class="ttname"><a href="classOpenMS_1_1Peak1D.html">OpenMS::Peak1D</a></div><div class="ttdoc">A 1-dimensional raw data point or peak. </div><div class="ttdef"><b>Definition:</b> Peak1D.h:55</div></div>
<div class="ttc" id="structOpenMS_1_1ScanWindow_html"><div class="ttname"><a href="structOpenMS_1_1ScanWindow.html">OpenMS::ScanWindow</a></div><div class="ttdoc">Scan window description. </div><div class="ttdef"><b>Definition:</b> ScanWindow.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_ad37f94415197fe6b7ab39e705877825e"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#ad37f94415197fe6b7ab39e705877825e">OpenMS::Instrument::IonOpticsType</a></div><div class="ttdeci">IonOpticsType</div><div class="ttdoc">ion optics type </div><div class="ttdef"><b>Definition:</b> Instrument.h:71</div></div>
<div class="ttc" id="classOpenMS_1_1Instrument_html_adeb3a96bea31dcca5dc2cba4d6e22cb5"><div class="ttname"><a href="classOpenMS_1_1Instrument.html#adeb3a96bea31dcca5dc2cba4d6e22cb5">OpenMS::Instrument::getVendor</a></div><div class="ttdeci">const String &amp; getVendor() const </div><div class="ttdoc">returns the instrument vendor </div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html_aa6c13dd3a27b1c13f4e240d6f4f8c4d3"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html#aa6c13dd3a27b1c13f4e240d6f4f8c4d3">OpenMS::IonDetector::setResolution</a></div><div class="ttdeci">void setResolution(DoubleReal resolution)</div><div class="ttdoc">sets the resolution (in ns) </div></div>
<div class="ttc" id="classOpenMS_1_1Sample_html"><div class="ttname"><a href="classOpenMS_1_1Sample.html">OpenMS::Sample</a></div><div class="ttdoc">Meta information about the sample. </div><div class="ttdef"><b>Definition:</b> Sample.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a4f15a2dc6638a7bdbcc97cab181bd52f"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a4f15a2dc6638a7bdbcc97cab181bd52f">OpenMS::MassAnalyzer::ReflectronState</a></div><div class="ttdeci">ReflectronState</div><div class="ttdoc">Reflectron state. </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:126</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_ac47980cff52080e1fd46f1983ff8d960"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#ac47980cff52080e1fd46f1983ff8d960">OpenMS::MassAnalyzer::setScanLaw</a></div><div class="ttdeci">void setScanLaw(ScanLaw scan_law)</div><div class="ttdoc">sets the scan law </div></div>
<div class="ttc" id="classOpenMS_1_1IonDetector_html"><div class="ttname"><a href="classOpenMS_1_1IonDetector.html">OpenMS::IonDetector</a></div><div class="ttdoc">Description of a ion detector (part of a MS Instrument) </div><div class="ttdef"><b>Definition:</b> IonDetector.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1ContactPerson_html_a391c58adf84a5096f9fa9161fb985902"><div class="ttname"><a href="classOpenMS_1_1ContactPerson.html#a391c58adf84a5096f9fa9161fb985902">OpenMS::ContactPerson::setFirstName</a></div><div class="ttdeci">void setFirstName(const String &amp;name)</div><div class="ttdoc">sets the first name of the person </div></div>
<div class="ttc" id="classOpenMS_1_1PeptideIdentification_html_ab4d15b02dbc53727d0b6dae927ad6688"><div class="ttname"><a href="classOpenMS_1_1PeptideIdentification.html#ab4d15b02dbc53727d0b6dae927ad6688">OpenMS::PeptideIdentification::setHits</a></div><div class="ttdeci">void setHits(const std::vector&lt; PeptideHit &gt; &amp;hits)</div><div class="ttdoc">Sets the peptide hits. </div></div>
<div class="ttc" id="classOpenMS_1_1Acquisition_html"><div class="ttname"><a href="classOpenMS_1_1Acquisition.html">OpenMS::Acquisition</a></div><div class="ttdoc">Information about one raw data spectrum that was combined with several other raw data spectra...</div><div class="ttdef"><b>Definition:</b> Acquisition.h:50</div></div>
<div class="ttc" id="classOpenMS_1_1Peak2D_html_abbdecccbbcf763c6c5eae3b7c3cb915e"><div class="ttname"><a href="classOpenMS_1_1Peak2D.html#abbdecccbbcf763c6c5eae3b7c3cb915e">OpenMS::Peak2D::setPosition</a></div><div class="ttdeci">void setPosition(const PositionType &amp;position)</div><div class="ttdoc">Mutable access to the position. </div><div class="ttdef"><b>Definition:</b> Peak2D.h:185</div></div>
<div class="ttc" id="classOpenMS_1_1DBConnection_html"><div class="ttname"><a href="classOpenMS_1_1DBConnection.html">OpenMS::DBConnection</a></div><div class="ttdoc">A class for connecting to a SQL database. </div><div class="ttdef"><b>Definition:</b> DBConnection.h:60</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a000fcbba4b64f34da2819581fc35443f"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a000fcbba4b64f34da2819581fc35443f">OpenMS::MassAnalyzer::setReflectronState</a></div><div class="ttdeci">void setReflectronState(ReflectronState reflecton_state)</div><div class="ttdoc">sets the reflectron state (for TOF) </div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_aa1f350d16338b42e2384db2e5aa4a3f4"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#aa1f350d16338b42e2384db2e5aa4a3f4">OpenMS::IonSource::IonizationMethod</a></div><div class="ttdeci">IonizationMethod</div><div class="ttdoc">ionization method </div><div class="ttdef"><b>Definition:</b> IonSource.h:80</div></div>
<div class="ttc" id="classOpenMS_1_1Software_html_aaee0f2845288173de9f6ad47e6ad31d5"><div class="ttname"><a href="classOpenMS_1_1Software.html#aaee0f2845288173de9f6ad47e6ad31d5">OpenMS::Software::getName</a></div><div class="ttdeci">const String &amp; getName() const </div><div class="ttdoc">returns the name of the software </div></div>
<div class="ttc" id="classOpenMS_1_1Gradient_html_a03ce84fddeaaab05620cf0b0a61adc13"><div class="ttname"><a href="classOpenMS_1_1Gradient.html#a03ce84fddeaaab05620cf0b0a61adc13">OpenMS::Gradient::getTimepoints</a></div><div class="ttdeci">const std::vector&lt; Int &gt; &amp; getTimepoints() const </div><div class="ttdoc">returns a const reference to the list of timepoints </div></div>
<div class="ttc" id="classOpenMS_1_1MetaInfoInterface_html"><div class="ttname"><a href="classOpenMS_1_1MetaInfoInterface.html">OpenMS::MetaInfoInterface</a></div><div class="ttdoc">Interface for classes that can store arbitrary meta information (Type-Name-Value tuples). </div><div class="ttdef"><b>Definition:</b> MetaInfoInterface.h:61</div></div>
<div class="ttc" id="classOpenMS_1_1String_html_ab9244483ff324b0dbd3e89d03ee63eb2"><div class="ttname"><a href="classOpenMS_1_1String.html#ab9244483ff324b0dbd3e89d03ee63eb2">OpenMS::String::toQString</a></div><div class="ttdeci">QString toQString() const </div><div class="ttdoc">Conversion to Qt QString. </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_a915462ec4a7a731fdd71f28e8a3463b1"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">OpenMS::ProteinIdentification::setScoreType</a></div><div class="ttdeci">void setScoreType(const String &amp;type)</div><div class="ttdoc">Sets the protein score type. </div></div>
<div class="ttc" id="classOpenMS_1_1PeptideHit_html_a209d1e10f38a766c3f73c9666e89e14d"><div class="ttname"><a href="classOpenMS_1_1PeptideHit.html#a209d1e10f38a766c3f73c9666e89e14d">OpenMS::PeptideHit::setSequence</a></div><div class="ttdeci">void setSequence(const AASequence &amp;sequence)</div><div class="ttdoc">sets the peptide sequence </div></div>
<div class="ttc" id="classOpenMS_1_1Software_html_af9810188aa685015e084d147d439aa8a"><div class="ttname"><a href="classOpenMS_1_1Software.html#af9810188aa685015e084d147d439aa8a">OpenMS::Software::setVersion</a></div><div class="ttdeci">void setVersion(const String &amp;version)</div><div class="ttdoc">sets the software version </div></div>
<div class="ttc" id="classOpenMS_1_1ContactPerson_html_ab884bb42e1849ac6bad45ae0cf1bb3a5"><div class="ttname"><a href="classOpenMS_1_1ContactPerson.html#ab884bb42e1849ac6bad45ae0cf1bb3a5">OpenMS::ContactPerson::setInstitution</a></div><div class="ttdeci">void setInstitution(const String &amp;institution)</div><div class="ttdoc">sets the affiliation </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a695379d31d23162e1a471951b21e6ba6"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a695379d31d23162e1a471951b21e6ba6">OpenMS::MassAnalyzer::setTOFTotalPathLength</a></div><div class="ttdeci">void setTOFTotalPathLength(DoubleReal TOF_total_path_length)</div><div class="ttdoc">sets the path length for a TOF mass analyzer (in meter) </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a475edd3f1f00cb539e5812ecb0a6ca23"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a475edd3f1f00cb539e5812ecb0a6ca23">OpenMS::MassAnalyzer::setScanTime</a></div><div class="ttdeci">void setScanTime(DoubleReal scan_time)</div><div class="ttdoc">sets the scan time for a single scan (in s) </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_a82e595befae76c1f7c22918420d2d9e8"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#a82e595befae76c1f7c22918420d2d9e8">OpenMS::ProteinIdentification::setSearchEngineVersion</a></div><div class="ttdeci">void setSearchEngineVersion(const String &amp;search_engine_version)</div><div class="ttdoc">Sets the search engine version. </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinHit_html_aba1fff7a176ff80d53f932769e606980"><div class="ttname"><a href="classOpenMS_1_1ProteinHit.html#aba1fff7a176ff80d53f932769e606980">OpenMS::ProteinHit::setAccession</a></div><div class="ttdeci">void setAccession(const String &amp;accession)</div><div class="ttdoc">sets the accession of the protein </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinHit_html"><div class="ttname"><a href="classOpenMS_1_1ProteinHit.html">OpenMS::ProteinHit</a></div><div class="ttdoc">Representation of a protein hit. </div><div class="ttdef"><b>Definition:</b> ProteinHit.h:54</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a373113a64e05061b5d1ad3070180ebee"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a373113a64e05061b5d1ad3070180ebee">OpenMS::IonSource::setInletType</a></div><div class="ttdeci">void setInletType(InletType inlet_type)</div><div class="ttdoc">sets the inlet type </div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1DIntervalBase_html_a84873a73e9e222a574dccff3bc2d860e"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1DIntervalBase.html#a84873a73e9e222a574dccff3bc2d860e">OpenMS::Internal::DIntervalBase::minPosition</a></div><div class="ttdeci">PositionType const &amp; minPosition() const </div><div class="ttdoc">Accessor to minimum position. </div><div class="ttdef"><b>Definition:</b> DIntervalBase.h:121</div></div>
<div class="ttc" id="classOpenMS_1_1Software_html_ae6b3b4b6857bc1987282e2f29611dd41"><div class="ttname"><a href="classOpenMS_1_1Software.html#ae6b3b4b6857bc1987282e2f29611dd41">OpenMS::Software::getVersion</a></div><div class="ttdeci">const String &amp; getVersion() const </div><div class="ttdoc">returns the software version </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_a8f7be6e80ef1c4599af3aa096c7f7089"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#a8f7be6e80ef1c4599af3aa096c7f7089">OpenMS::InstrumentSettings::getPolarity</a></div><div class="ttdeci">IonSource::Polarity getPolarity() const </div><div class="ttdoc">returns the polarity </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_aca95bbdb59bcd3152d70f399e928b4a2"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#aca95bbdb59bcd3152d70f399e928b4a2">OpenMS::DBAdapter::storeFile_</a></div><div class="ttdeci">UID storeFile_(const String &amp;parent_table, UID parent_id, const SourceFile &amp;file)</div><div class="ttdoc">Stores, updates or deletes file information. </div></div>
<div class="ttc" id="classOpenMS_1_1PeptideHit_html_a2f865e760a429c2648e2de2db7793fcb"><div class="ttname"><a href="classOpenMS_1_1PeptideHit.html#a2f865e760a429c2648e2de2db7793fcb">OpenMS::PeptideHit::setAAAfter</a></div><div class="ttdeci">void setAAAfter(char acid)</div><div class="ttdoc">sets the amino acid after the sequence </div></div>
<div class="ttc" id="group__Concept_html_gaf9ecec2d692138fab9167164a457cbd4"><div class="ttname"><a href="group__Concept.html#gaf9ecec2d692138fab9167164a457cbd4">OpenMS::Size</a></div><div class="ttdeci">size_t Size</div><div class="ttdoc">Size type e.g. used as variable which can hold result of size() </div><div class="ttdef"><b>Definition:</b> Types.h:144</div></div>
<div class="ttc" id="classOpenMS_1_1AcquisitionInfo_html_a883a8e420b509ac1c9a4b08f4494915d"><div class="ttname"><a href="classOpenMS_1_1AcquisitionInfo.html#a883a8e420b509ac1c9a4b08f4494915d">OpenMS::AcquisitionInfo::getMethodOfCombination</a></div><div class="ttdeci">const String &amp; getMethodOfCombination() const </div><div class="ttdoc">returns the method of combination </div></div>
<div class="ttc" id="classOpenMS_1_1InstrumentSettings_html_af9e3bb003dab9b2cf00854a1eb3b01f0"><div class="ttname"><a href="classOpenMS_1_1InstrumentSettings.html#af9e3bb003dab9b2cf00854a1eb3b01f0">OpenMS::InstrumentSettings::ScanMode</a></div><div class="ttdeci">ScanMode</div><div class="ttdoc">scan mode </div><div class="ttdef"><b>Definition:</b> InstrumentSettings.h:53</div></div>
<div class="ttc" id="classOpenMS_1_1ProteinHit_html_a7daed733ac80f8002f3a1fbdc97c21e1"><div class="ttname"><a href="classOpenMS_1_1ProteinHit.html#a7daed733ac80f8002f3a1fbdc97c21e1">OpenMS::ProteinHit::setRank</a></div><div class="ttdeci">void setRank(UInt newrank)</div><div class="ttdoc">sets the rank </div></div>
<div class="ttc" id="classOpenMS_1_1DateTime_html"><div class="ttname"><a href="classOpenMS_1_1DateTime.html">OpenMS::DateTime</a></div><div class="ttdoc">DateTime Class. </div><div class="ttdef"><b>Definition:</b> DateTime.h:55</div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_a8abccfc6fb1eceb2a2c43f17055a9360"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#a8abccfc6fb1eceb2a2c43f17055a9360">OpenMS::ProteinIdentification::setSignificanceThreshold</a></div><div class="ttdeci">void setSignificanceThreshold(DoubleReal value)</div><div class="ttdoc">Sets the protein significance threshold value. </div></div>
<div class="ttc" id="classOpenMS_1_1PeptideIdentification_html_a915462ec4a7a731fdd71f28e8a3463b1"><div class="ttname"><a href="classOpenMS_1_1PeptideIdentification.html#a915462ec4a7a731fdd71f28e8a3463b1">OpenMS::PeptideIdentification::setScoreType</a></div><div class="ttdeci">void setScoreType(const String &amp;type)</div><div class="ttdoc">sets the peptide score type </div></div>
<div class="ttc" id="classOpenMS_1_1Acquisition_html_a3ea2e9a83b6b409b673cac018f5099ab"><div class="ttname"><a href="classOpenMS_1_1Acquisition.html#a3ea2e9a83b6b409b673cac018f5099ab">OpenMS::Acquisition::setIdentifier</a></div><div class="ttdeci">void setIdentifier(const String &amp;identifier)</div><div class="ttdoc">sets the index/number of the scan </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a6394f9d7a9b0355daca159b81617341c"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a6394f9d7a9b0355daca159b81617341c">OpenMS::MassAnalyzer::setResolutionType</a></div><div class="ttdeci">void setResolutionType(ResolutionType resolution_type)</div><div class="ttdoc">sets the resolution type </div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_af7e8f29d109ed9627598d2f8a6bb28a9"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#af7e8f29d109ed9627598d2f8a6bb28a9">OpenMS::ProteinIdentification::getSearchParameters</a></div><div class="ttdeci">const SearchParameters &amp; getSearchParameters() const </div><div class="ttdoc">Returns the search parameters. </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html">OpenMS::DBAdapter</a></div><div class="ttdoc">A class for accessing and storing data in a SQL database. </div><div class="ttdef"><b>Definition:</b> DBAdapter.h:69</div></div>
<div class="ttc" id="classOpenMS_1_1Internal_1_1DIntervalBase_html_ac093fc547d9a49aef9950f6cd92b5588"><div class="ttname"><a href="classOpenMS_1_1Internal_1_1DIntervalBase.html#ac093fc547d9a49aef9950f6cd92b5588">OpenMS::Internal::DIntervalBase::maxPosition</a></div><div class="ttdeci">PositionType const &amp; maxPosition() const </div><div class="ttdoc">Accessor to maximum position. </div><div class="ttdef"><b>Definition:</b> DIntervalBase.h:127</div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_a53ddde64ac4058bb889286eb546e0959"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#a53ddde64ac4058bb889286eb546e0959">OpenMS::PeakFileOptions::getMZRange</a></div><div class="ttdeci">const DRange&lt; 1 &gt; &amp; getMZRange() const </div><div class="ttdoc">returns the MZ range </div></div>
<div class="ttc" id="classOpenMS_1_1HPLC_html_ac79b4a7512caa7c7700d61e0e9accaae"><div class="ttname"><a href="classOpenMS_1_1HPLC.html#ac79b4a7512caa7c7700d61e0e9accaae">OpenMS::HPLC::getPressure</a></div><div class="ttdeci">UInt getPressure() const </div><div class="ttdoc">returns the pressure (in bar) </div></div>
<div class="ttc" id="classOpenMS_1_1Software_html_a77d37f2e1c12e8bd33ea0e660a89e927"><div class="ttname"><a href="classOpenMS_1_1Software.html#a77d37f2e1c12e8bd33ea0e660a89e927">OpenMS::Software::setName</a></div><div class="ttdeci">void setName(const String &amp;name)</div><div class="ttdoc">sets the name of the software </div></div>
<div class="ttc" id="classOpenMS_1_1Precursor_html_ade504dd839d796a10e9fc4d840952dc1"><div class="ttname"><a href="classOpenMS_1_1Precursor.html#ade504dd839d796a10e9fc4d840952dc1">OpenMS::Precursor::ActivationMethod</a></div><div class="ttdeci">ActivationMethod</div><div class="ttdoc">Method of activation. </div><div class="ttdef"><b>Definition:</b> Precursor.h:64</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a5b7d6f465d2b2dade6c296d9aa439b9c"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a5b7d6f465d2b2dade6c296d9aa439b9c">OpenMS::IonSource::setOrder</a></div><div class="ttdeci">void setOrder(Int order)</div><div class="ttdoc">sets the order </div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html">OpenMS::PeakFileOptions</a></div><div class="ttdoc">Options for loading files containing peak data. </div><div class="ttdef"><b>Definition:</b> PeakFileOptions.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a134230547dd6de10b20f6904d9422ec3"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a134230547dd6de10b20f6904d9422ec3">OpenMS::MassAnalyzer::AnalyzerType</a></div><div class="ttdeci">AnalyzerType</div><div class="ttdoc">analyzer type </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:53</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a3188359ccfe5a3afff5d3bcbb0e26abb"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a3188359ccfe5a3afff5d3bcbb0e26abb">OpenMS::IonSource::setIonizationMethod</a></div><div class="ttdeci">void setIonizationMethod(IonizationMethod ionization_type)</div><div class="ttdoc">sets the ionization method </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a2e362a69ba721e7ea80a89c46a997af6"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a2e362a69ba721e7ea80a89c46a997af6">OpenMS::MassAnalyzer::setIsolationWidth</a></div><div class="ttdeci">void setIsolationWidth(DoubleReal isolation_width)</div><div class="ttdoc">sets the isolation width i.e. in which m/z range the precursor ion is selected for MS to the n (in m/...</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a7652e90863e029a4e3620fdefb4cb854"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a7652e90863e029a4e3620fdefb4cb854">OpenMS::MassAnalyzer::ScanLaw</a></div><div class="ttdeci">ScanLaw</div><div class="ttdoc">Scan law. </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:114</div></div>
<div class="ttc" id="group__Concept_html_ga7cc214a236ad3bb6ad435bdcf5262a3f"><div class="ttname"><a href="group__Concept.html#ga7cc214a236ad3bb6ad435bdcf5262a3f">OpenMS::Int</a></div><div class="ttdeci">int Int</div><div class="ttdoc">Signed integer type. </div><div class="ttdef"><b>Definition:</b> Types.h:100</div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html_a55f2fe6f72e20af53d3620f79386edac"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html#a55f2fe6f72e20af53d3620f79386edac">OpenMS::MassAnalyzer::setFinalMSExponent</a></div><div class="ttdeci">void setFinalMSExponent(Int final_MS_exponent)</div><div class="ttdoc">sets the final MS exponent </div></div>
<div class="ttc" id="classOpenMS_1_1MassAnalyzer_html"><div class="ttname"><a href="classOpenMS_1_1MassAnalyzer.html">OpenMS::MassAnalyzer</a></div><div class="ttdoc">Descripton of a mass analyzer (part of a MS Instrument) </div><div class="ttdef"><b>Definition:</b> MassAnalyzer.h:48</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html"><div class="ttname"><a href="classOpenMS_1_1IonSource.html">OpenMS::IonSource</a></div><div class="ttdoc">Description of a ion source (part of a MS Instrument) </div><div class="ttdef"><b>Definition:</b> IonSource.h:47</div></div>
<div class="ttc" id="classOpenMS_1_1ProteinIdentification_html_ae0728c54c04bcc99a4c6ebfa961ed2c5"><div class="ttname"><a href="classOpenMS_1_1ProteinIdentification.html#ae0728c54c04bcc99a4c6ebfa961ed2c5">OpenMS::ProteinIdentification::setDateTime</a></div><div class="ttdeci">void setDateTime(const DateTime &amp;date)</div><div class="ttdoc">Sets the date of the protein identification run. </div></div>
<div class="ttc" id="group__Concept_html_gab5658a38464ac4e09c792c26840150f1"><div class="ttname"><a href="group__Concept.html#gab5658a38464ac4e09c792c26840150f1">OpenMS::UID</a></div><div class="ttdeci">OPENMS_UINT64_TYPE UID</div><div class="ttdoc">A unique object ID (as unsigned 64bit type). </div><div class="ttdef"><b>Definition:</b> Types.h:137</div></div>
<div class="ttc" id="classOpenMS_1_1IonSource_html_a84a045fa4024e050ca8be6d33311a054"><div class="ttname"><a href="classOpenMS_1_1IonSource.html#a84a045fa4024e050ca8be6d33311a054">OpenMS::IonSource::Polarity</a></div><div class="ttdeci">Polarity</div><div class="ttdoc">Polarity of the ion source. </div><div class="ttdef"><b>Definition:</b> IonSource.h:140</div></div>
<div class="ttc" id="classOpenMS_1_1HPLC_html_a7f85e7384767cfef76bc5d30bb9888ee"><div class="ttname"><a href="classOpenMS_1_1HPLC.html#a7f85e7384767cfef76bc5d30bb9888ee">OpenMS::HPLC::getColumn</a></div><div class="ttdeci">const String &amp; getColumn() const </div><div class="ttdoc">returns a const reference to the column description </div></div>
<div class="ttc" id="classOpenMS_1_1DBAdapter_html_a67582ba75d08b191330077249f16f8a1"><div class="ttname"><a href="classOpenMS_1_1DBAdapter.html#a67582ba75d08b191330077249f16f8a1">OpenMS::DBAdapter::deleteMetaInfo_</a></div><div class="ttdeci">void deleteMetaInfo_(const String &amp;parent_table, const String &amp;condition)</div><div class="ttdoc">Conditionally deletes MetaInfo data from database. </div></div>
<div class="ttc" id="classOpenMS_1_1Exception_1_1ParseError_html"><div class="ttname"><a href="classOpenMS_1_1Exception_1_1ParseError.html">OpenMS::Exception::ParseError</a></div><div class="ttdoc">Parse Error exception. </div><div class="ttdef"><b>Definition:</b> Exception.h:608</div></div>
<div class="ttc" id="classOpenMS_1_1PeptideIdentification_html"><div class="ttname"><a href="classOpenMS_1_1PeptideIdentification.html">OpenMS::PeptideIdentification</a></div><div class="ttdoc">Represents the peptide hits for a spectrum. </div><div class="ttdef"><b>Definition:</b> PeptideIdentification.h:63</div></div>
<div class="ttc" id="classOpenMS_1_1Gradient_html_a972de0061b9ae1f49d707ed7e2f4759a"><div class="ttname"><a href="classOpenMS_1_1Gradient.html#a972de0061b9ae1f49d707ed7e2f4759a">OpenMS::Gradient::getEluents</a></div><div class="ttdeci">const std::vector&lt; String &gt; &amp; getEluents() const </div><div class="ttdoc">returns a const reference to the list of eluents </div></div>
<div class="ttc" id="classOpenMS_1_1PeakFileOptions_html_ab67bae9dafa817481d9efe286bf853c0"><div class="ttname"><a href="classOpenMS_1_1PeakFileOptions.html#ab67bae9dafa817481d9efe286bf853c0">OpenMS::PeakFileOptions::getMetadataOnly</a></div><div class="ttdeci">bool getMetadataOnly() const </div><div class="ttdoc">returns whether or not to load only meta data </div></div>
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<TD><font color="#c0c0c0">OpenMS / TOPP release 1.11.1</font></TD>
<TD align="right"><font color="#c0c0c0">Documentation generated on Thu Nov 14 2013 11:19:12 using doxygen 1.8.5</font></TD>
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